3AIXA

Crystal structure of pcna2-pcna3 complex from sulfolobus tokodaii (i222)
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
245
structure length
245
Chain Sequence
MRVKVIDADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEKEEKVGVKLEDFTDVLKTVTKNDSLYLETDENQNIKVTLDGVYERTFTFPSIVASEIETPNLNLEFPFKAKALTVTFTDIIDEIEDIGGDSITFKAEGGKLYLSANSDMGSSTIELSTENGGLLESEGGDAESVYGLEYVVNTSKMRKPSDTVEIAFGSQIPLKLRYNLPQGGYADFYIAPRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
source organism Sulfolobus tokodaii
publication title A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex
pubmed doi rcsb
molecule keywords DNA polymerase sliding clamp C
total genus 51
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2010-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3aixA00
3A2FB 1UL1A 3GPMA 1VYJA 3WGWA 3F1WA 3P83A 2IJXA 1RWZA 2IO4B 3LX1A 3AIXB 4YHRA 3AIZA 4L6PA 1IZ4A 2ZVVA 1AXCA 3A1JA 3FDSD 3VKXA 4HK1A 2AVTA 5H0TA 2NTIA 3G65B 1IZ5A 2HIKA 3AIZC 2HIIB 5IXAA 1RXMA 3GGRA 3A1JC 3HSLX 5DAIA 4L60A 5IY4A 2NTIC 5A6DA 3I2MX 2IZOC 5IWDA 2AWAA 2ZVMA 2Z0LA 3GGRC 4TR6A 1CZDA 2IO4A 5DA7A 3AIXA 3HI8A 3U5ZF 3V60B 3P91A 5CFKA 1B77A 2IX2B 4CS5A 3V62B 1B8HA 1GE8A 3G65A 3LX2A 3K4XA 3FDSC 1YYPA 2HIIA 2ZVLA 5HACA 3P87A 1DMLA 3G65C 2HIKC 1PLRA 2HIIC 3U60F 3U61F 1RXZA 4ZTDA 5AUJA 2NTIB 2IZOB 3IFVA 2IX2A 5JNED 1ISQA 3TBLA 5E0VA 2OD8A 1VYMA 1UD9A 4RJFA 2IX2C 1W60A 2ZVWA 1U76A 1SXJF 3A1JB 1PLQA 1T6LA 2ZVKA 3V61B 3GPNA 2HIKB 5E0TA 1U7BA 5B7OA 5E0UA 3GGRB 4D2GA
chains in the Genus database with same CATH superfamily
3A2FB 1UL1A 3GPMA 1VYJA 3WGWA 3F1WA 3P83A 2IJXA 1RWZA 2IO4B 3LX1A 3AIXB 4YHRA 3AIZA 4L6PA 1IZ4A 2ZVVA 1AXCA 3A1JA 3FDSD 3VKXA 4HK1A 2AVTA 5H0TA 2NTIA 3G65B 1IZ5A 2HIKA 3AIZC 2HIIB 5IXAA 1RXMA 3GGRA 3A1JC 3HSLX 5DAIA 4L60A 5IY4A 2NTIC 5A6DA 3I2MX 2IZOC 5IWDA 2AWAA 2ZVMA 2Z0LA 3GGRC 4TR6A 1CZDA 2IO4A 5DA7A 3AIXA 3HI8A 3U5ZF 3V60B 3P91A 5CFKA 1B77A 2IX2B 4CS5A 3V62B 1B8HA 1GE8A 3G65A 3LX2A 3K4XA 3FDSC 1YYPA 2HIIA 2ZVLA 5HACA 3P87A 1DMLA 3G65C 2HIKC 1PLRA 2HIIC 3U60F 3U61F 1RXZA 4ZTDA 5AUJA 2NTIB 2IZOB 3IFVA 2IX2A 5JNED 1ISQA 3TBLA 5E0VA 2OD8A 1VYMA 1UD9A 4RJFA 2IX2C 1W60A 2ZVWA 1U76A 1SXJF 3A1JB 1PLQA 1T6LA 2ZVKA 3V61B 3GPNA 2HIKB 5E0TA 1U7BA 5B7OA 5E0UA 3GGRB 4D2GA
chains in the Genus database with same CATH topology
3A2FB 1UL1A 3GPMA 1VYJA 3WGWA 3F1WA 3P83A 2IJXA 1RWZA 2IO4B 3LX1A 3AIXB 4YHRA 3AIZA 4L6PA 1IZ4A 2ZVVA 1AXCA 3A1JA 3FDSD 3VKXA 4HK1A 2AVTA 5H0TA 2NTIA 3G65B 1IZ5A 2HIKA 3AIZC 2HIIB 5IXAA 1RXMA 3GGRA 3A1JC 3HSLX 5DAIA 4L60A 5IY4A 2NTIC 5A6DA 3I2MX 2IZOC 5IWDA 2AWAA 2ZVMA 2Z0LA 3GGRC 4TR6A 1CZDA 2IO4A 5DA7A 3AIXA 3HI8A 3U5ZF 3V60B 3P91A 5CFKA 1B77A 2IX2B 4CS5A 3V62B 1B8HA 1GE8A 3G65A 3LX2A 3K4XA 3FDSC 1YYPA 2HIIA 2ZVLA 5HACA 3P87A 1DMLA 3G65C 2HIKC 1PLRA 2HIIC 3U60F 3U61F 1RXZA 4ZTDA 5AUJA 2NTIB 2IZOB 3IFVA 2IX2A 5JNED 1ISQA 3TBLA 5E0VA 2OD8A 1VYMA 1UD9A 4RJFA 2IX2C 1W60A 2ZVWA 1U76A 1SXJF 3A1JB 1PLQA 1T6LA 2ZVKA 3V61B 3GPNA 2HIKB 5E0TA 1U7BA 5B7OA 5E0UA 3GGRB 4D2GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A2F B;  1UL1 A;  3GPM A;  1VYJ A;  3WGW A;  3F1W A;  3P83 A;  2IJX A;  1RWZ A;  2IO4 B;  3LX1 A;  3AIX B;  4YHR A;  3AIZ A;  4L6P A;  1IZ4 A;  2ZVV A;  1AXC A;  3A1J A;  3FDS D;  3VKX A;  4HK1 A;  2AVT A;  5H0T A;  2NTI A;  3G65 B;  1IZ5 A;  2HIK A;  3AIZ C;  2HII B;  5IXA A;  1RXM A;  3GGR A;  3A1J C;  3HSL X;  5DAI A;  4L60 A;  5IY4 A;  2NTI C;  5A6D A;  3I2M X;  2IZO C;  5IWD A;  2AWA A;  2ZVM A;  2Z0L A;  3GGR C;  4TR6 A;  1CZD A;  2IO4 A;  5DA7 A;  3AIX A;  3HI8 A;  3U5Z F;  3V60 B;  3P91 A;  5CFK A;  1B77 A;  2IX2 B;  4CS5 A;  3V62 B;  1B8H A;  1GE8 A;  3G65 A;  3LX2 A;  3K4X A;  3FDS C;  1YYP A;  2HII A;  2ZVL A;  5HAC A;  3P87 A;  1DML A;  3G65 C;  2HIK C;  1PLR A;  2HII C;  3U60 F;  3U61 F;  1RXZ A;  4ZTD A;  5AUJ A;  2NTI B;  2IZO B;  3IFV A;  2IX2 A;  5JNE D;  1ISQ A;  3TBL A;  5E0V A;  2OD8 A;  1VYM A;  1UD9 A;  4RJF A;  2IX2 C;  1W60 A;  2ZVW A;  1U76 A;  1SXJ F;  3A1J B;  1PLQ A;  1T6L A;  2ZVK A;  3V61 B;  3GPN A;  2HIK B;  5E0T A;  1U7B A;  5B7O A;  5E0U A;  3GGR B;  4D2G A; 
#chains in the Genus database with same CATH topology
 3A2F B;  1UL1 A;  3GPM A;  1VYJ A;  3WGW A;  3F1W A;  3P83 A;  2IJX A;  1RWZ A;  2IO4 B;  3LX1 A;  3AIX B;  4YHR A;  3AIZ A;  4L6P A;  1IZ4 A;  2ZVV A;  1AXC A;  3A1J A;  3FDS D;  3VKX A;  4HK1 A;  2AVT A;  5H0T A;  2NTI A;  3G65 B;  1IZ5 A;  2HIK A;  3AIZ C;  2HII B;  5IXA A;  1RXM A;  3GGR A;  3A1J C;  3HSL X;  5DAI A;  4L60 A;  5IY4 A;  2NTI C;  5A6D A;  3I2M X;  2IZO C;  5IWD A;  2AWA A;  2ZVM A;  2Z0L A;  3GGR C;  4TR6 A;  1CZD A;  2IO4 A;  5DA7 A;  3AIX A;  3HI8 A;  3U5Z F;  3V60 B;  3P91 A;  5CFK A;  1B77 A;  2IX2 B;  4CS5 A;  3V62 B;  1B8H A;  1GE8 A;  3G65 A;  3LX2 A;  3K4X A;  3FDS C;  1YYP A;  2HII A;  2ZVL A;  5HAC A;  3P87 A;  1DML A;  3G65 C;  2HIK C;  1PLR A;  2HII C;  3U60 F;  3U61 F;  1RXZ A;  4ZTD A;  5AUJ A;  2NTI B;  2IZO B;  3IFV A;  2IX2 A;  5JNE D;  1ISQ A;  3TBL A;  5E0V A;  2OD8 A;  1VYM A;  1UD9 A;  4RJF A;  2IX2 C;  1W60 A;  2ZVW A;  1U76 A;  1SXJ F;  3A1J B;  1PLQ A;  1T6L A;  2ZVK A;  3V61 B;  3GPN A;  2HIK B;  5E0T A;  1U7B A;  5B7O A;  5E0U A;  3GGR B;  4D2G A; 
#chains in the Genus database with same CATH homology
 3A2F B;  1UL1 A;  3GPM A;  1VYJ A;  3WGW A;  3F1W A;  3P83 A;  2IJX A;  1RWZ A;  2IO4 B;  3LX1 A;  3AIX B;  4YHR A;  3AIZ A;  4L6P A;  1IZ4 A;  2ZVV A;  1AXC A;  3A1J A;  3FDS D;  3VKX A;  4HK1 A;  2AVT A;  5H0T A;  2NTI A;  3G65 B;  1IZ5 A;  2HIK A;  3AIZ C;  2HII B;  5IXA A;  1RXM A;  3GGR A;  3A1J C;  3HSL X;  5DAI A;  4L60 A;  5IY4 A;  2NTI C;  5A6D A;  3I2M X;  2IZO C;  5IWD A;  2AWA A;  2ZVM A;  2Z0L A;  3GGR C;  4TR6 A;  1CZD A;  2IO4 A;  5DA7 A;  3AIX A;  3HI8 A;  3U5Z F;  3V60 B;  3P91 A;  5CFK A;  1B77 A;  2IX2 B;  4CS5 A;  3V62 B;  1B8H A;  1GE8 A;  3G65 A;  3LX2 A;  3K4X A;  3FDS C;  1YYP A;  2HII A;  2ZVL A;  5HAC A;  3P87 A;  1DML A;  3G65 C;  2HIK C;  1PLR A;  2HII C;  3U60 F;  3U61 F;  1RXZ A;  4ZTD A;  5AUJ A;  2NTI B;  2IZO B;  3IFV A;  2IX2 A;  5JNE D;  1ISQ A;  3TBL A;  5E0V A;  2OD8 A;  1VYM A;  1UD9 A;  4RJF A;  2IX2 C;  1W60 A;  2ZVW A;  1U76 A;  1SXJ F;  3A1J B;  1PLQ A;  1T6L A;  2ZVK A;  3V61 B;  3GPN A;  2HIK B;  5E0T A;  1U7B A;  5B7O A;  5E0U A;  3GGR B;  4D2G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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