3AIX | Genus

Total Genus 61

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	61
sequence length	248
structure length	248
Chain Sequence	MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILGKAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKTSIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEISADENTVTLSTEEAGRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQLIFWIAPRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 248 atoms

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248 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication
source organism	Sulfolobus tokodaii
publication title	A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex pubmed doi rcsb
molecule keywords	DNA polymerase sliding clamp C
total genus	61
structure length	248
sequence length	248
ec nomenclature
pdb deposition date	2010-05-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
B	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	3aixB01

3G65A 2IZOC 2IX2B 3V60B 3LX1A 4HK1A 2NTIA 1ISQA 1PLQA 1U76A 4D2GA 4CS5A 3GPMA 3F1WA 1IZ5A 3AIZC 2IJXA 3A1JC 5HACA 1PLRA 3U61F 3I2MX 1IZ4A 2IZOB 4YHRA 2Z0LA 2ZVVA 2HIKC 2HIIB 3GGRA 1VYMA 2HIIA 1VYJA 2ZVLA 3P83A 3AIXB 4ZTDA 3HSLX 1RXZA 2IX2A 5E0VA 2IO4B 5E0TA 5E0UA 1GE8A 2IO4A 2HIKB 3P87A 1T6LA 2HIKA 3V62B 5H0TA 5AUJA 3K4XA 3V61B 1W60A 2ZVMA 2AWAA 3U60F 3VKXA 3G65C 5DA7A 1U7BA 2NTIC 3A2FB 4L6PA 1RWZA 3A1JB 3AIZA 3AIXA 3WGWA 5IWDA 3P91A 2ZVKA 3A1JA 1DMLA 3TBLA 3IFVA 1CZDA 3FDSD 3G65B 1B8HA 1B77A 5JNED 1SXJF 2NTIB 3GGRC 5IY4A 5B7OA 1YYPA 2HIIC 2OD8A 2ZVWA 3GPNA 1AXCA 3U5ZF 2IX2C 5DAIA 3LX2A 4RJFA 5CFKA 3HI8A 5A6DA 4L60A 1UL1A 1UD9A 2AVTA 3GGRB 5IXAA 3FDSC 1RXMA 4TR6A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3G65 A;  2IZO C;  2IX2 B;  3V60 B;  3LX1 A;  4HK1 A;  2NTI A;  1ISQ A;  1PLQ A;  1U76 A;  4D2G A;  4CS5 A;  3GPM A;  3F1W A;  1IZ5 A;  3AIZ C;  2IJX A;  3A1J C;  5HAC A;  1PLR A;  3U61 F;  3I2M X;  1IZ4 A;  2IZO B;  4YHR A;  2Z0L A;  2ZVV A;  2HIK C;  2HII B;  3GGR A;  1VYM A;  2HII A;  1VYJ A;  2ZVL A;  3P83 A;  3AIX B;  4ZTD A;  3HSL X;  1RXZ A;  2IX2 A;  5E0V A;  2IO4 B;  5E0T A;  5E0U A;  1GE8 A;  2IO4 A;  2HIK B;  3P87 A;  1T6L A;  2HIK A;  3V62 B;  5H0T A;  5AUJ A;  3K4X A;  3V61 B;  1W60 A;  2ZVM A;  2AWA A;  3U60 F;  3VKX A;  3G65 C;  5DA7 A;  1U7B A;  2NTI C;  3A2F B;  4L6P A;  1RWZ A;  3A1J B;  3AIZ A;  3AIX A;  3WGW A;  5IWD A;  3P91 A;  2ZVK A;  3A1J A;  1DML A;  3TBL A;  3IFV A;  1CZD A;  3FDS D;  3G65 B;  1B8H A;  1B77 A;  5JNE D;  1SXJ F;  2NTI B;  3GGR C;  5IY4 A;  5B7O A;  1YYP A;  2HII C;  2OD8 A;  2ZVW A;  3GPN A;  1AXC A;  3U5Z F;  2IX2 C;  5DAI A;  3LX2 A;  4RJF A;  5CFK A;  3HI8 A;  5A6D A;  4L60 A;  1UL1 A;  1UD9 A;  2AVT A;  3GGR B;  5IXA A;  3FDS C;  1RXM A;  4TR6 A; 
#chains in the Genus database with same CATH topology
 3G65 A;  2IZO C;  2IX2 B;  3V60 B;  3LX1 A;  4HK1 A;  2NTI A;  1ISQ A;  1PLQ A;  1U76 A;  4D2G A;  4CS5 A;  3GPM A;  3F1W A;  1IZ5 A;  3AIZ C;  2IJX A;  3A1J C;  5HAC A;  1PLR A;  3U61 F;  3I2M X;  1IZ4 A;  2IZO B;  4YHR A;  2Z0L A;  2ZVV A;  2HIK C;  2HII B;  3GGR A;  1VYM A;  2HII A;  1VYJ A;  2ZVL A;  3P83 A;  3AIX B;  4ZTD A;  3HSL X;  1RXZ A;  2IX2 A;  5E0V A;  2IO4 B;  5E0T A;  5E0U A;  1GE8 A;  2IO4 A;  2HIK B;  3P87 A;  1T6L A;  2HIK A;  3V62 B;  5H0T A;  5AUJ A;  3K4X A;  3V61 B;  1W60 A;  2ZVM A;  2AWA A;  3U60 F;  3VKX A;  3G65 C;  5DA7 A;  1U7B A;  2NTI C;  3A2F B;  4L6P A;  1RWZ A;  3A1J B;  3AIZ A;  3AIX A;  3WGW A;  5IWD A;  3P91 A;  2ZVK A;  3A1J A;  1DML A;  3TBL A;  3IFV A;  1CZD A;  3FDS D;  3G65 B;  1B8H A;  1B77 A;  5JNE D;  1SXJ F;  2NTI B;  3GGR C;  5IY4 A;  5B7O A;  1YYP A;  2HII C;  2OD8 A;  2ZVW A;  3GPN A;  1AXC A;  3U5Z F;  2IX2 C;  5DAI A;  3LX2 A;  4RJF A;  5CFK A;  3HI8 A;  5A6D A;  4L60 A;  1UL1 A;  1UD9 A;  2AVT A;  3GGR B;  5IXA A;  3FDS C;  1RXM A;  4TR6 A; 
#chains in the Genus database with same CATH homology
 3G65 A;  2IZO C;  2IX2 B;  3V60 B;  3LX1 A;  4HK1 A;  2NTI A;  1ISQ A;  1PLQ A;  1U76 A;  4D2G A;  4CS5 A;  3GPM A;  3F1W A;  1IZ5 A;  3AIZ C;  2IJX A;  3A1J C;  5HAC A;  1PLR A;  3U61 F;  3I2M X;  1IZ4 A;  2IZO B;  4YHR A;  2Z0L A;  2ZVV A;  2HIK C;  2HII B;  3GGR A;  1VYM A;  2HII A;  1VYJ A;  2ZVL A;  3P83 A;  3AIX B;  4ZTD A;  3HSL X;  1RXZ A;  2IX2 A;  5E0V A;  2IO4 B;  5E0T A;  5E0U A;  1GE8 A;  2IO4 A;  2HIK B;  3P87 A;  1T6L A;  2HIK A;  3V62 B;  5H0T A;  5AUJ A;  3K4X A;  3V61 B;  1W60 A;  2ZVM A;  2AWA A;  3U60 F;  3VKX A;  3G65 C;  5DA7 A;  1U7B A;  2NTI C;  3A2F B;  4L6P A;  1RWZ A;  3A1J B;  3AIZ A;  3AIX A;  3WGW A;  5IWD A;  3P91 A;  2ZVK A;  3A1J A;  1DML A;  3TBL A;  3IFV A;  1CZD A;  3FDS D;  3G65 B;  1B8H A;  1B77 A;  5JNE D;  1SXJ F;  2NTI B;  3GGR C;  5IY4 A;  5B7O A;  1YYP A;  2HII C;  2OD8 A;  2ZVW A;  3GPN A;  1AXC A;  3U5Z F;  2IX2 C;  5DAI A;  3LX2 A;  4RJF A;  5CFK A;  3HI8 A;  5A6D A;  4L60 A;  1UL1 A;  1UD9 A;  2AVT A;  3GGR B;  5IXA A;  3FDS C;  1RXM A;  4TR6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AIXB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations