3AIZ | Genus

Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	65
sequence length	248
structure length	248
Chain Sequence	MIKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDKPLGIKININDLKKILGKAKSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEKTSIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEEVEISADENTVTLSTEEAGRTYKSLLKQDKPLKSLNVESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQLIFWIAPRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 248 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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248 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication
source organism	Sulfolobus tokodaii
publication title	A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex pubmed doi rcsb
molecule keywords	DNA polymerase sliding clamp B
total genus	65
structure length	248
sequence length	248
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-05-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	3aizA01

4HK1A 4YHRA 1AXCA 1RXMA 2IX2A 3P87A 5A6DA 5JNED 4D2GA 1VYJA 2HIKC 3FDSC 3GPNA 4CS5A 1VYMA 1RXZA 2HIKA 2IZOB 3HI8A 3F1WA 2IO4B 2AVTA 3GPMA 3GGRB 1B8HA 4ZTDA 1UD9A 3AIZC 3V60B 5DA7A 1B77A 2HIIB 1U76A 3AIZA 1ISQA 3IFVA 3K4XA 3HSLX 3AIXB 3I2MX 5E0UA 3U60F 1YYPA 5H0TA 3V62B 5AUJA 2IZOC 3G65C 3FDSD 4L6PA 1T6LA 1U7BA 2ZVWA 3G65A 4RJFA 3VKXA 5IWDA 3GGRC 3A1JB 2IO4A 3LX2A 4L60A 1UL1A 3GGRA 2HIIC 1GE8A 1IZ4A 3V61B 2HIIA 2Z0LA 3AIXA 5IXAA 2NTIB 1PLRA 2AWAA 3U5ZF 2IX2B 3U61F 3A1JC 2ZVMA 2OD8A 1IZ5A 3A1JA 5DAIA 3P83A 3TBLA 2HIKB 5HACA 5E0TA 5CFKA 1DMLA 2ZVKA 1CZDA 2IJXA 5IY4A 3G65B 1PLQA 2ZVVA 1W60A 5B7OA 2NTIC 1SXJF 3A2FB 2ZVLA 3WGWA 2NTIA 3LX1A 3P91A 5E0VA 1RWZA 2IX2C 4TR6A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4HK1 A;  4YHR A;  1AXC A;  1RXM A;  2IX2 A;  3P87 A;  5A6D A;  5JNE D;  4D2G A;  1VYJ A;  2HIK C;  3FDS C;  3GPN A;  4CS5 A;  1VYM A;  1RXZ A;  2HIK A;  2IZO B;  3HI8 A;  3F1W A;  2IO4 B;  2AVT A;  3GPM A;  3GGR B;  1B8H A;  4ZTD A;  1UD9 A;  3AIZ C;  3V60 B;  5DA7 A;  1B77 A;  2HII B;  1U76 A;  3AIZ A;  1ISQ A;  3IFV A;  3K4X A;  3HSL X;  3AIX B;  3I2M X;  5E0U A;  3U60 F;  1YYP A;  5H0T A;  3V62 B;  5AUJ A;  2IZO C;  3G65 C;  3FDS D;  4L6P A;  1T6L A;  1U7B A;  2ZVW A;  3G65 A;  4RJF A;  3VKX A;  5IWD A;  3GGR C;  3A1J B;  2IO4 A;  3LX2 A;  4L60 A;  1UL1 A;  3GGR A;  2HII C;  1GE8 A;  1IZ4 A;  3V61 B;  2HII A;  2Z0L A;  3AIX A;  5IXA A;  2NTI B;  1PLR A;  2AWA A;  3U5Z F;  2IX2 B;  3U61 F;  3A1J C;  2ZVM A;  2OD8 A;  1IZ5 A;  3A1J A;  5DAI A;  3P83 A;  3TBL A;  2HIK B;  5HAC A;  5E0T A;  5CFK A;  1DML A;  2ZVK A;  1CZD A;  2IJX A;  5IY4 A;  3G65 B;  1PLQ A;  2ZVV A;  1W60 A;  5B7O A;  2NTI C;  1SXJ F;  3A2F B;  2ZVL A;  3WGW A;  2NTI A;  3LX1 A;  3P91 A;  5E0V A;  1RWZ A;  2IX2 C;  4TR6 A; 
#chains in the Genus database with same CATH topology
 4HK1 A;  4YHR A;  1AXC A;  1RXM A;  2IX2 A;  3P87 A;  5A6D A;  5JNE D;  4D2G A;  1VYJ A;  2HIK C;  3FDS C;  3GPN A;  4CS5 A;  1VYM A;  1RXZ A;  2HIK A;  2IZO B;  3HI8 A;  3F1W A;  2IO4 B;  2AVT A;  3GPM A;  3GGR B;  1B8H A;  4ZTD A;  1UD9 A;  3AIZ C;  3V60 B;  5DA7 A;  1B77 A;  2HII B;  1U76 A;  3AIZ A;  1ISQ A;  3IFV A;  3K4X A;  3HSL X;  3AIX B;  3I2M X;  5E0U A;  3U60 F;  1YYP A;  5H0T A;  3V62 B;  5AUJ A;  2IZO C;  3G65 C;  3FDS D;  4L6P A;  1T6L A;  1U7B A;  2ZVW A;  3G65 A;  4RJF A;  3VKX A;  5IWD A;  3GGR C;  3A1J B;  2IO4 A;  3LX2 A;  4L60 A;  1UL1 A;  3GGR A;  2HII C;  1GE8 A;  1IZ4 A;  3V61 B;  2HII A;  2Z0L A;  3AIX A;  5IXA A;  2NTI B;  1PLR A;  2AWA A;  3U5Z F;  2IX2 B;  3U61 F;  3A1J C;  2ZVM A;  2OD8 A;  1IZ5 A;  3A1J A;  5DAI A;  3P83 A;  3TBL A;  2HIK B;  5HAC A;  5E0T A;  5CFK A;  1DML A;  2ZVK A;  1CZD A;  2IJX A;  5IY4 A;  3G65 B;  1PLQ A;  2ZVV A;  1W60 A;  5B7O A;  2NTI C;  1SXJ F;  3A2F B;  2ZVL A;  3WGW A;  2NTI A;  3LX1 A;  3P91 A;  5E0V A;  1RWZ A;  2IX2 C;  4TR6 A; 
#chains in the Genus database with same CATH homology
 4HK1 A;  4YHR A;  1AXC A;  1RXM A;  2IX2 A;  3P87 A;  5A6D A;  5JNE D;  4D2G A;  1VYJ A;  2HIK C;  3FDS C;  3GPN A;  4CS5 A;  1VYM A;  1RXZ A;  2HIK A;  2IZO B;  3HI8 A;  3F1W A;  2IO4 B;  2AVT A;  3GPM A;  3GGR B;  1B8H A;  4ZTD A;  1UD9 A;  3AIZ C;  3V60 B;  5DA7 A;  1B77 A;  2HII B;  1U76 A;  3AIZ A;  1ISQ A;  3IFV A;  3K4X A;  3HSL X;  3AIX B;  3I2M X;  5E0U A;  3U60 F;  1YYP A;  5H0T A;  3V62 B;  5AUJ A;  2IZO C;  3G65 C;  3FDS D;  4L6P A;  1T6L A;  1U7B A;  2ZVW A;  3G65 A;  4RJF A;  3VKX A;  5IWD A;  3GGR C;  3A1J B;  2IO4 A;  3LX2 A;  4L60 A;  1UL1 A;  3GGR A;  2HII C;  1GE8 A;  1IZ4 A;  3V61 B;  2HII A;  2Z0L A;  3AIX A;  5IXA A;  2NTI B;  1PLR A;  2AWA A;  3U5Z F;  2IX2 B;  3U61 F;  3A1J C;  2ZVM A;  2OD8 A;  1IZ5 A;  3A1J A;  5DAI A;  3P83 A;  3TBL A;  2HIK B;  5HAC A;  5E0T A;  5CFK A;  1DML A;  2ZVK A;  1CZD A;  2IJX A;  5IY4 A;  3G65 B;  1PLQ A;  2ZVV A;  1W60 A;  5B7O A;  2NTI C;  1SXJ F;  3A2F B;  2ZVL A;  3WGW A;  2NTI A;  3LX1 A;  3P91 A;  5E0V A;  1RWZ A;  2IX2 C;  4TR6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AIZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations