3GGR | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	264
structure length	264
Chain Sequence	KCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGHFVLATL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 264 atoms

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264 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell cycle
source organism	Homo sapiens
publication title	Structure and functional implications of the human rad9-hus1-rad1 cell cycle checkpoint complex pubmed doi rcsb
molecule keywords	Cell cycle checkpoint control protein RAD9A
total genus	39
structure length	264
sequence length	264
ec nomenclature	ec 3.1.11.2: Exodeoxyribonuclease III.
pdb deposition date	2009-03-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04139	Rad9	Rad9

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	3ggrA00

1T6LA 3A1JC 3F1WA 3V62B 2AVTA 2ZVLA 3G65A 4TR6A 1PLRA 1W60A 2NTIA 5IY4A 3LX1A 5HACA 2ZVVA 1PLQA 4L6PA 2IX2B 2IO4B 2HIKB 3AIZA 2HIIC 4RJFA 1VYMA 2ZVKA 3VKXA 2IZOB 3GGRA 1AXCA 3A2FB 2AWAA 3AIXA 5CFKA 3FDSC 1CZDA 3P87A 4YHRA 2IJXA 3GPMA 3G65B 3A1JA 2NTIB 3U61F 1DMLA 1RXZA 3IFVA 5IWDA 4CS5A 3U5ZF 5DA7A 2OD8A 5H0TA 3LX2A 5AUJA 2IX2C 2HIKC 1IZ5A 1U7BA 1UL1A 2HIIA 3TBLA 3FDSD 1YYPA 2IZOC 3GGRB 4L60A 3P91A 3HSLX 3WGWA 3I2MX 3AIXB 3HI8A 3U60F 5E0TA 5IXAA 1VYJA 1U76A 4D2GA 4ZTDA 3G65C 1GE8A 3A1JB 1RWZA 1ISQA 2NTIC 5JNED 3P83A 5B7OA 2Z0LA 5A6DA 3V61B 3K4XA 1RXMA 3AIZC 2IX2A 2IO4A 2ZVMA 3V60B 2HIKA 2HIIB 1SXJF 5DAIA 4HK1A 3GGRC 5E0VA 1B8HA 1B77A 1IZ4A 2ZVWA 3GPNA 1UD9A 5E0UA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1T6L A;  3A1J C;  3F1W A;  3V62 B;  2AVT A;  2ZVL A;  3G65 A;  4TR6 A;  1PLR A;  1W60 A;  2NTI A;  5IY4 A;  3LX1 A;  5HAC A;  2ZVV A;  1PLQ A;  4L6P A;  2IX2 B;  2IO4 B;  2HIK B;  3AIZ A;  2HII C;  4RJF A;  1VYM A;  2ZVK A;  3VKX A;  2IZO B;  3GGR A;  1AXC A;  3A2F B;  2AWA A;  3AIX A;  5CFK A;  3FDS C;  1CZD A;  3P87 A;  4YHR A;  2IJX A;  3GPM A;  3G65 B;  3A1J A;  2NTI B;  3U61 F;  1DML A;  1RXZ A;  3IFV A;  5IWD A;  4CS5 A;  3U5Z F;  5DA7 A;  2OD8 A;  5H0T A;  3LX2 A;  5AUJ A;  2IX2 C;  2HIK C;  1IZ5 A;  1U7B A;  1UL1 A;  2HII A;  3TBL A;  3FDS D;  1YYP A;  2IZO C;  3GGR B;  4L60 A;  3P91 A;  3HSL X;  3WGW A;  3I2M X;  3AIX B;  3HI8 A;  3U60 F;  5E0T A;  5IXA A;  1VYJ A;  1U76 A;  4D2G A;  4ZTD A;  3G65 C;  1GE8 A;  3A1J B;  1RWZ A;  1ISQ A;  2NTI C;  5JNE D;  3P83 A;  5B7O A;  2Z0L A;  5A6D A;  3V61 B;  3K4X A;  1RXM A;  3AIZ C;  2IX2 A;  2IO4 A;  2ZVM A;  3V60 B;  2HIK A;  2HII B;  1SXJ F;  5DAI A;  4HK1 A;  3GGR C;  5E0V A;  1B8H A;  1B77 A;  1IZ4 A;  2ZVW A;  3GPN A;  1UD9 A;  5E0U A; 
#chains in the Genus database with same CATH topology
 1T6L A;  3A1J C;  3F1W A;  3V62 B;  2AVT A;  2ZVL A;  3G65 A;  4TR6 A;  1PLR A;  1W60 A;  2NTI A;  5IY4 A;  3LX1 A;  5HAC A;  2ZVV A;  1PLQ A;  4L6P A;  2IX2 B;  2IO4 B;  2HIK B;  3AIZ A;  2HII C;  4RJF A;  1VYM A;  2ZVK A;  3VKX A;  2IZO B;  3GGR A;  1AXC A;  3A2F B;  2AWA A;  3AIX A;  5CFK A;  3FDS C;  1CZD A;  3P87 A;  4YHR A;  2IJX A;  3GPM A;  3G65 B;  3A1J A;  2NTI B;  3U61 F;  1DML A;  1RXZ A;  3IFV A;  5IWD A;  4CS5 A;  3U5Z F;  5DA7 A;  2OD8 A;  5H0T A;  3LX2 A;  5AUJ A;  2IX2 C;  2HIK C;  1IZ5 A;  1U7B A;  1UL1 A;  2HII A;  3TBL A;  3FDS D;  1YYP A;  2IZO C;  3GGR B;  4L60 A;  3P91 A;  3HSL X;  3WGW A;  3I2M X;  3AIX B;  3HI8 A;  3U60 F;  5E0T A;  5IXA A;  1VYJ A;  1U76 A;  4D2G A;  4ZTD A;  3G65 C;  1GE8 A;  3A1J B;  1RWZ A;  1ISQ A;  2NTI C;  5JNE D;  3P83 A;  5B7O A;  2Z0L A;  5A6D A;  3V61 B;  3K4X A;  1RXM A;  3AIZ C;  2IX2 A;  2IO4 A;  2ZVM A;  3V60 B;  2HIK A;  2HII B;  1SXJ F;  5DAI A;  4HK1 A;  3GGR C;  5E0V A;  1B8H A;  1B77 A;  1IZ4 A;  2ZVW A;  3GPN A;  1UD9 A;  5E0U A; 
#chains in the Genus database with same CATH homology
 1T6L A;  3A1J C;  3F1W A;  3V62 B;  2AVT A;  2ZVL A;  3G65 A;  4TR6 A;  1PLR A;  1W60 A;  2NTI A;  5IY4 A;  3LX1 A;  5HAC A;  2ZVV A;  1PLQ A;  4L6P A;  2IX2 B;  2IO4 B;  2HIK B;  3AIZ A;  2HII C;  4RJF A;  1VYM A;  2ZVK A;  3VKX A;  2IZO B;  3GGR A;  1AXC A;  3A2F B;  2AWA A;  3AIX A;  5CFK A;  3FDS C;  1CZD A;  3P87 A;  4YHR A;  2IJX A;  3GPM A;  3G65 B;  3A1J A;  2NTI B;  3U61 F;  1DML A;  1RXZ A;  3IFV A;  5IWD A;  4CS5 A;  3U5Z F;  5DA7 A;  2OD8 A;  5H0T A;  3LX2 A;  5AUJ A;  2IX2 C;  2HIK C;  1IZ5 A;  1U7B A;  1UL1 A;  2HII A;  3TBL A;  3FDS D;  1YYP A;  2IZO C;  3GGR B;  4L60 A;  3P91 A;  3HSL X;  3WGW A;  3I2M X;  3AIX B;  3HI8 A;  3U60 F;  5E0T A;  5IXA A;  1VYJ A;  1U76 A;  4D2G A;  4ZTD A;  3G65 C;  1GE8 A;  3A1J B;  1RWZ A;  1ISQ A;  2NTI C;  5JNE D;  3P83 A;  5B7O A;  2Z0L A;  5A6D A;  3V61 B;  3K4X A;  1RXM A;  3AIZ C;  2IX2 A;  2IO4 A;  2ZVM A;  3V60 B;  2HIK A;  2HII B;  1SXJ F;  5DAI A;  4HK1 A;  3GGR C;  5E0V A;  1B8H A;  1B77 A;  1IZ4 A;  2ZVW A;  3GPN A;  1UD9 A;  5E0U A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3GGRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations