3GGR | Genus

Total Genus 34

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	278
structure length	278
Chain Sequence	FRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell cycle
source organism	Homo sapiens
publication title	Structure and functional implications of the human rad9-hus1-rad1 cell cycle checkpoint complex pubmed doi rcsb
molecule keywords	Cell cycle checkpoint control protein RAD9A
total genus	34
structure length	278
sequence length	278
ec nomenclature
pdb deposition date	2009-03-02

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	3ggrB00

3G65A 4CS5A 3AIXB 3LX2A 1PLQA 1B77A 3U61F 2Z0LA 3AIZA 1U7BA 3GPMA 3HSLX 5DA7A 1B8HA 4L6PA 2NTIC 1ISQA 2ZVMA 1SXJF 3A1JB 4YHRA 3LX1A 2HIIA 5E0TA 5AUJA 1VYMA 5CFKA 5B7OA 2ZVLA 5E0UA 2IX2C 1PLRA 4TR6A 3GPNA 2HIKB 3G65C 4D2GA 4L60A 3AIZC 1AXCA 3HI8A 3A2FB 1UD9A 2OD8A 2AVTA 1RWZA 5E0VA 3A1JA 3GGRA 2IJXA 3V62B 3V61B 2HIIC 2IZOB 1GE8A 3IFVA 3V60B 4ZTDA 1YYPA 2IO4A 1IZ4A 1IZ5A 3P83A 1RXZA 3U60F 3AIXA 2NTIB 5HACA 3A1JC 3GGRC 5A6DA 4RJFA 5JNED 1VYJA 2ZVKA 3U5ZF 3G65B 3P87A 3P91A 3WGWA 2HIKA 3FDSC 2ZVWA 3K4XA 3TBLA 1W60A 4HK1A 1CZDA 2HIIB 2ZVVA 5H0TA 5DAIA 5IY4A 1DMLA 5IWDA 2AWAA 2IX2B 1UL1A 2HIKC 3VKXA 3F1WA 3GGRB 1T6LA 2NTIA 3FDSD 1U76A 2IZOC 2IO4B 3I2MX 2IX2A 5IXAA 1RXMA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3G65 A;  4CS5 A;  3AIX B;  3LX2 A;  1PLQ A;  1B77 A;  3U61 F;  2Z0L A;  3AIZ A;  1U7B A;  3GPM A;  3HSL X;  5DA7 A;  1B8H A;  4L6P A;  2NTI C;  1ISQ A;  2ZVM A;  1SXJ F;  3A1J B;  4YHR A;  3LX1 A;  2HII A;  5E0T A;  5AUJ A;  1VYM A;  5CFK A;  5B7O A;  2ZVL A;  5E0U A;  2IX2 C;  1PLR A;  4TR6 A;  3GPN A;  2HIK B;  3G65 C;  4D2G A;  4L60 A;  3AIZ C;  1AXC A;  3HI8 A;  3A2F B;  1UD9 A;  2OD8 A;  2AVT A;  1RWZ A;  5E0V A;  3A1J A;  3GGR A;  2IJX A;  3V62 B;  3V61 B;  2HII C;  2IZO B;  1GE8 A;  3IFV A;  3V60 B;  4ZTD A;  1YYP A;  2IO4 A;  1IZ4 A;  1IZ5 A;  3P83 A;  1RXZ A;  3U60 F;  3AIX A;  2NTI B;  5HAC A;  3A1J C;  3GGR C;  5A6D A;  4RJF A;  5JNE D;  1VYJ A;  2ZVK A;  3U5Z F;  3G65 B;  3P87 A;  3P91 A;  3WGW A;  2HIK A;  3FDS C;  2ZVW A;  3K4X A;  3TBL A;  1W60 A;  4HK1 A;  1CZD A;  2HII B;  2ZVV A;  5H0T A;  5DAI A;  5IY4 A;  1DML A;  5IWD A;  2AWA A;  2IX2 B;  1UL1 A;  2HIK C;  3VKX A;  3F1W A;  3GGR B;  1T6L A;  2NTI A;  3FDS D;  1U76 A;  2IZO C;  2IO4 B;  3I2M X;  2IX2 A;  5IXA A;  1RXM A; 
#chains in the Genus database with same CATH topology
 3G65 A;  4CS5 A;  3AIX B;  3LX2 A;  1PLQ A;  1B77 A;  3U61 F;  2Z0L A;  3AIZ A;  1U7B A;  3GPM A;  3HSL X;  5DA7 A;  1B8H A;  4L6P A;  2NTI C;  1ISQ A;  2ZVM A;  1SXJ F;  3A1J B;  4YHR A;  3LX1 A;  2HII A;  5E0T A;  5AUJ A;  1VYM A;  5CFK A;  5B7O A;  2ZVL A;  5E0U A;  2IX2 C;  1PLR A;  4TR6 A;  3GPN A;  2HIK B;  3G65 C;  4D2G A;  4L60 A;  3AIZ C;  1AXC A;  3HI8 A;  3A2F B;  1UD9 A;  2OD8 A;  2AVT A;  1RWZ A;  5E0V A;  3A1J A;  3GGR A;  2IJX A;  3V62 B;  3V61 B;  2HII C;  2IZO B;  1GE8 A;  3IFV A;  3V60 B;  4ZTD A;  1YYP A;  2IO4 A;  1IZ4 A;  1IZ5 A;  3P83 A;  1RXZ A;  3U60 F;  3AIX A;  2NTI B;  5HAC A;  3A1J C;  3GGR C;  5A6D A;  4RJF A;  5JNE D;  1VYJ A;  2ZVK A;  3U5Z F;  3G65 B;  3P87 A;  3P91 A;  3WGW A;  2HIK A;  3FDS C;  2ZVW A;  3K4X A;  3TBL A;  1W60 A;  4HK1 A;  1CZD A;  2HII B;  2ZVV A;  5H0T A;  5DAI A;  5IY4 A;  1DML A;  5IWD A;  2AWA A;  2IX2 B;  1UL1 A;  2HIK C;  3VKX A;  3F1W A;  3GGR B;  1T6L A;  2NTI A;  3FDS D;  1U76 A;  2IZO C;  2IO4 B;  3I2M X;  2IX2 A;  5IXA A;  1RXM A; 
#chains in the Genus database with same CATH homology
 3G65 A;  4CS5 A;  3AIX B;  3LX2 A;  1PLQ A;  1B77 A;  3U61 F;  2Z0L A;  3AIZ A;  1U7B A;  3GPM A;  3HSL X;  5DA7 A;  1B8H A;  4L6P A;  2NTI C;  1ISQ A;  2ZVM A;  1SXJ F;  3A1J B;  4YHR A;  3LX1 A;  2HII A;  5E0T A;  5AUJ A;  1VYM A;  5CFK A;  5B7O A;  2ZVL A;  5E0U A;  2IX2 C;  1PLR A;  4TR6 A;  3GPN A;  2HIK B;  3G65 C;  4D2G A;  4L60 A;  3AIZ C;  1AXC A;  3HI8 A;  3A2F B;  1UD9 A;  2OD8 A;  2AVT A;  1RWZ A;  5E0V A;  3A1J A;  3GGR A;  2IJX A;  3V62 B;  3V61 B;  2HII C;  2IZO B;  1GE8 A;  3IFV A;  3V60 B;  4ZTD A;  1YYP A;  2IO4 A;  1IZ4 A;  1IZ5 A;  3P83 A;  1RXZ A;  3U60 F;  3AIX A;  2NTI B;  5HAC A;  3A1J C;  3GGR C;  5A6D A;  4RJF A;  5JNE D;  1VYJ A;  2ZVK A;  3U5Z F;  3G65 B;  3P87 A;  3P91 A;  3WGW A;  2HIK A;  3FDS C;  2ZVW A;  3K4X A;  3TBL A;  1W60 A;  4HK1 A;  1CZD A;  2HII B;  2ZVV A;  5H0T A;  5DAI A;  5IY4 A;  1DML A;  5IWD A;  2AWA A;  2IX2 B;  1UL1 A;  2HIK C;  3VKX A;  3F1W A;  3GGR B;  1T6L A;  2NTI A;  3FDS D;  1U76 A;  2IZO C;  2IO4 B;  3I2M X;  2IX2 A;  5IXA A;  1RXM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3GGRB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN