3GP4A

Crystal structure of putative merr family transcriptional regulator from listeria monocytogenes
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
132
structure length
132
Chain Sequence
SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (59-74)AH4 (78-90)AH1 (21-28)AH2 (32-41)TVIII1 (42-45)AH5 (95-147)EMPTY3H1 (92-94)TI1 (50-53)Updating...
connected with : NaN
publication title Structure of putative MerR family transcriptional regulator from Listeria monocytogenes
rcsb
molecule tags Transcription regulator
source organism Listeria monocytogenes str. 4b f2365
molecule keywords Transcriptional regulator, MerR family
total genus 52
structure length 132
sequence length 132
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 3gp4A00
4WLSA 3QAOA 5E01A 3HH0A 3Q3DA 2DG6A 1EXIA 5I44A 3UCSA 1Q05A 3Q2YA 1EXJA 1Q0AA 2ZHHA 3Q1MA 3Q5PA 3Q5SA 4WLWA 4R22B 1Q08A 4R24B 1R8DA 1JBGA 1Q09A 1Q07A 1R8EA 2ZHGA 2VZ4A 2JMLA 3IAOA 3GPVA 1Q06A 3Q5RA 3GP4A 5D90A 4R4EA 3D70A 5D8CA 3D71A 5I41B 3D6YA 4J2NA 3D6ZA
chains in the Genus database with same CATH superfamily
1RH6A 2OG0A 4DCZA 4WLSA 3QAOA 5E01A 3HH0A 3EZ2A 3Q3DA 2DG6A 2KVVA 1EXIA 5I44A 1Q05A 3UCSA 3Q2YA 1EXJA 2IEFA 1Q0AA 2ZHHA 3Q1MA 3Q5PA 3Q5SA 4WLWA 4R22B 1Q08A 4R24B 1R8DA 3EZFA 1JBGA 1Q09A 1Q07A 1R8EA 2ZHGA 1Y6UA 2VZ4A 2JMLA 3EZ9A 3IAOA 3GPVA 1Q06A 3Q5RA 3GP4A 5D90A 4R4EA 3D70A 5D8CA 3D71A 1LX8A 3EZ6A 1PM6A 5I41B 3EZ7A 3D6YA 4J2NA 4LHFA 3D6ZA
chains in the Genus database with same CATH topology
1RH6A 2OG0A 4DCZA 4WLSA 3QAOA 5E01A 3HH0A 3EZ2A 3Q3DA 2DG6A 2KVVA 1EXIA 5I44A 1Q05A 3UCSA 3Q2YA 1EXJA 2IEFA 1Q0AA 2ZHHA 3Q1MA 3Q5PA 3Q5SA 4WLWA 4R22B 1Q08A 4R24B 1R8DA 3EZFA 1JBGA 1Q09A 1Q07A 1R8EA 2ZHGA 1Y6UA 2VZ4A 2JMLA 3EZ9A 3IAOA 3GPVA 1Q06A 3Q5RA 3GP4A 5D90A 4R4EA 3D70A 5D8CA 3D71A 1LX8A 3EZ6A 1PM6A 5I41B 3EZ7A 3D6YA 4J2NA 4LHFA 3D6ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WLS A;  3QAO A;  5E01 A;  3HH0 A;  3Q3D A;  2DG6 A;  1EXI A;  5I44 A;  3UCS A;  1Q05 A;  3Q2Y A;  1EXJ A;  1Q0A A;  2ZHH A;  3Q1M A;  3Q5P A;  3Q5S A;  4WLW A;  4R22 B;  1Q08 A;  4R24 B;  1R8D A;  1JBG A;  1Q09 A;  1Q07 A;  1R8E A;  2ZHG A;  2VZ4 A;  2JML A;  3IAO A;  3GPV A;  1Q06 A;  3Q5R A;  3GP4 A;  5D90 A;  4R4E A;  3D70 A;  5D8C A;  3D71 A;  5I41 B;  3D6Y A;  4J2N A;  3D6Z A; 
#chains in the Genus database with same CATH topology
 1RH6 A;  2OG0 A;  4DCZ A;  4WLS A;  3QAO A;  5E01 A;  3HH0 A;  3EZ2 A;  3Q3D A;  2DG6 A;  2KVV A;  1EXI A;  5I44 A;  1Q05 A;  3UCS A;  3Q2Y A;  1EXJ A;  2IEF A;  1Q0A A;  2ZHH A;  3Q1M A;  3Q5P A;  3Q5S A;  4WLW A;  4R22 B;  1Q08 A;  4R24 B;  1R8D A;  3EZF A;  1JBG A;  1Q09 A;  1Q07 A;  1R8E A;  2ZHG A;  1Y6U A;  2VZ4 A;  2JML A;  3EZ9 A;  3IAO A;  3GPV A;  1Q06 A;  3Q5R A;  3GP4 A;  5D90 A;  4R4E A;  3D70 A;  5D8C A;  3D71 A;  1LX8 A;  3EZ6 A;  1PM6 A;  5I41 B;  3EZ7 A;  3D6Y A;  4J2N A;  4LHF A;  3D6Z A; 
#chains in the Genus database with same CATH homology
 1RH6 A;  2OG0 A;  4DCZ A;  4WLS A;  3QAO A;  5E01 A;  3HH0 A;  3EZ2 A;  3Q3D A;  2DG6 A;  2KVV A;  1EXI A;  5I44 A;  1Q05 A;  3UCS A;  3Q2Y A;  1EXJ A;  2IEF A;  1Q0A A;  2ZHH A;  3Q1M A;  3Q5P A;  3Q5S A;  4WLW A;  4R22 B;  1Q08 A;  4R24 B;  1R8D A;  3EZF A;  1JBG A;  1Q09 A;  1Q07 A;  1R8E A;  2ZHG A;  1Y6U A;  2VZ4 A;  2JML A;  3EZ9 A;  3IAO A;  3GPV A;  1Q06 A;  3Q5R A;  3GP4 A;  5D90 A;  4R4E A;  3D70 A;  5D8C A;  3D71 A;  1LX8 A;  3EZ6 A;  1PM6 A;  5I41 B;  3EZ7 A;  3D6Y A;  4J2N A;  4LHF A;  3D6Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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