3I2MX

The crystal structure of pf-8, the dna polymerase accessory subunit from kaposi s sarcoma-associated herpesvirus
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
297
structure length
288
Chain Sequence
DFHYGVRVDVTLLSKIRRVNEHIKSATKTGVVQVHGSACTPTLSVLSSVGTAGVLGMRIKNALTPLVGHTEGSGDVSFSFRNTSVGSGFTHTRELFGANVLDAGIAFYRKPQFVRTTISYGDNLTSTVHKSVVDQKGILPFHDRMEAGGRTTRLMLCGKTGAFLLKWLRQQKTKEDQTVTVSVSETLSIVTFSLGGVSKIIDFKPETKPVSGWDGLKGKKSVDVGVVHTDALSRVSLESLIAALRMCKVPGWFTPGLIWHSNEILEVEGVPTGCQSGDVKLSVLLLEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (4-6)S2 (34-40)TIV4 (62-65)S1 (7-11)TI2 (100-103)EMPTYS4 (56-62)AH1 (13-31)AH2 (94-99)S6 (78-84)TIV1 (41-44)TI1 (40-43)S3 (45-51)AH3 (170-182)TIV13 (231-234)TIV2 (52-55)S16 (277-283)S9 (138-144)TIV15 (272-275)TIV7 (132-135)TVIII1 (84-87)S8 (125-132)TII1 (87-90)TIV6 (112-124)S7 (103-111)TIV8 (134-137)TI3 (147-150)AH4 (249-257)TIV11 (206-209)TI4 (153-156)TIV9 (160-163)S11 (190-196)TI5 (197-200)TVIII2 (185-188)TIV10 (196-199)S12 (201-206)S13 (209-214)TII3 (261-264)S15 (265-271)S14 (243-248)TIV5 (74-77)TII2 (225-228)S10 (164-166)Updating...
connected with : NaN
molecule tags Replication
source organism Human herpesvirus 8
publication title The crystal structure of PF-8, the DNA polymerase accessory subunit from Kaposi's sarcoma-associated herpesvirus.
pubmed doi rcsb
molecule keywords ORF59
total genus 66
structure length 288
sequence length 297
ec nomenclature
pdb deposition date 2009-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3i2mX00
3P87A 2AWAA 3A1JC 3FDSC 3U60F 1DMLA 3AIXA 3A2FB 1T6LA 1YYPA 3LX2A 1W60A 3A1JA 5E0TA 3FDSD 1RXMA 3U61F 2ZVVA 3GPMA 2ZVWA 4L6PA 1CZDA 2HIKC 1UL1A 3HI8A 1AXCA 2IX2B 1PLQA 5A6DA 3G65C 2IZOC 2HIKA 3AIXB 5AUJA 5HACA 1RXZA 3AIZC 5JNED 1GE8A 1PLRA 3WGWA 4TR6A 5B7OA 3A1JB 3F1WA 3IFVA 1IZ5A 1SXJF 4CS5A 5IXAA 3HSLX 2IJXA 1VYMA 2NTIC 3AIZA 3V62B 2IO4B 3GGRC 2HIIC 4YHRA 1U7BA 2OD8A 2ZVKA 3TBLA 2NTIA 4L60A 3GGRA 2HIIA 5IY4A 3I2MX 2ZVMA 3LX1A 3K4XA 2Z0LA 3G65A 5DA7A 5E0VA 3VKXA 2AVTA 4HK1A 3P91A 4D2GA 2IZOB 3U5ZF 5H0TA 1IZ4A 5E0UA 1VYJA 1B8HA 3V60B 2IX2C 1RWZA 2NTIB 4ZTDA 2HIKB 4RJFA 3GGRB 1UD9A 1U76A 2ZVLA 3V61B 5CFKA 5DAIA 2HIIB 1ISQA 2IO4A 3G65B 3P83A 5IWDA 3GPNA 1B77A 2IX2A
chains in the Genus database with same CATH superfamily
3P87A 2AWAA 3A1JC 3FDSC 3U60F 1DMLA 3AIXA 3A2FB 1T6LA 1YYPA 3LX2A 1W60A 3A1JA 5E0TA 3FDSD 1RXMA 3U61F 2ZVVA 3GPMA 2ZVWA 4L6PA 1CZDA 2HIKC 1UL1A 3HI8A 1AXCA 2IX2B 1PLQA 5A6DA 3G65C 2IZOC 2HIKA 3AIXB 5AUJA 5HACA 1RXZA 3AIZC 5JNED 1GE8A 1PLRA 3WGWA 4TR6A 5B7OA 3A1JB 3F1WA 3IFVA 1IZ5A 1SXJF 4CS5A 5IXAA 3HSLX 2IJXA 1VYMA 2NTIC 3AIZA 3V62B 2IO4B 3GGRC 2HIIC 4YHRA 1U7BA 2OD8A 2ZVKA 3TBLA 2NTIA 4L60A 3GGRA 2HIIA 5IY4A 3I2MX 2ZVMA 3LX1A 3K4XA 2Z0LA 3G65A 5DA7A 5E0VA 3VKXA 2AVTA 4HK1A 3P91A 4D2GA 2IZOB 3U5ZF 5H0TA 1IZ4A 5E0UA 1VYJA 1B8HA 3V60B 2IX2C 1RWZA 2NTIB 4ZTDA 2HIKB 4RJFA 3GGRB 1UD9A 1U76A 2ZVLA 3V61B 5CFKA 5DAIA 2HIIB 1ISQA 2IO4A 3G65B 3P83A 5IWDA 3GPNA 1B77A 2IX2A
chains in the Genus database with same CATH topology
3P87A 2AWAA 3A1JC 3FDSC 3U60F 1DMLA 3AIXA 3A2FB 1T6LA 1YYPA 3LX2A 1W60A 3A1JA 5E0TA 3FDSD 1RXMA 3U61F 2ZVVA 3GPMA 2ZVWA 4L6PA 1CZDA 2HIKC 1UL1A 3HI8A 1AXCA 2IX2B 1PLQA 5A6DA 3G65C 2IZOC 2HIKA 3AIXB 5AUJA 5HACA 1RXZA 3AIZC 5JNED 1GE8A 1PLRA 3WGWA 4TR6A 5B7OA 3A1JB 3F1WA 3IFVA 1IZ5A 1SXJF 4CS5A 5IXAA 3HSLX 2IJXA 1VYMA 2NTIC 3AIZA 3V62B 2IO4B 3GGRC 2HIIC 4YHRA 1U7BA 2OD8A 2ZVKA 3TBLA 2NTIA 4L60A 3GGRA 2HIIA 5IY4A 3I2MX 2ZVMA 3LX1A 3K4XA 2Z0LA 3G65A 5DA7A 5E0VA 3VKXA 2AVTA 4HK1A 3P91A 4D2GA 2IZOB 3U5ZF 5H0TA 1IZ4A 5E0UA 1VYJA 1B8HA 3V60B 2IX2C 1RWZA 2NTIB 4ZTDA 2HIKB 4RJFA 3GGRB 1UD9A 1U76A 2ZVLA 3V61B 5CFKA 5DAIA 2HIIB 1ISQA 2IO4A 3G65B 3P83A 5IWDA 3GPNA 1B77A 2IX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P87 A;  2AWA A;  3A1J C;  3FDS C;  3U60 F;  1DML A;  3AIX A;  3A2F B;  1T6L A;  1YYP A;  3LX2 A;  1W60 A;  3A1J A;  5E0T A;  3FDS D;  1RXM A;  3U61 F;  2ZVV A;  3GPM A;  2ZVW A;  4L6P A;  1CZD A;  2HIK C;  1UL1 A;  3HI8 A;  1AXC A;  2IX2 B;  1PLQ A;  5A6D A;  3G65 C;  2IZO C;  2HIK A;  3AIX B;  5AUJ A;  5HAC A;  1RXZ A;  3AIZ C;  5JNE D;  1GE8 A;  1PLR A;  3WGW A;  4TR6 A;  5B7O A;  3A1J B;  3F1W A;  3IFV A;  1IZ5 A;  1SXJ F;  4CS5 A;  5IXA A;  3HSL X;  2IJX A;  1VYM A;  2NTI C;  3AIZ A;  3V62 B;  2IO4 B;  3GGR C;  2HII C;  4YHR A;  1U7B A;  2OD8 A;  2ZVK A;  3TBL A;  2NTI A;  4L60 A;  3GGR A;  2HII A;  5IY4 A;  3I2M X;  2ZVM A;  3LX1 A;  3K4X A;  2Z0L A;  3G65 A;  5DA7 A;  5E0V A;  3VKX A;  2AVT A;  4HK1 A;  3P91 A;  4D2G A;  2IZO B;  3U5Z F;  5H0T A;  1IZ4 A;  5E0U A;  1VYJ A;  1B8H A;  3V60 B;  2IX2 C;  1RWZ A;  2NTI B;  4ZTD A;  2HIK B;  4RJF A;  3GGR B;  1UD9 A;  1U76 A;  2ZVL A;  3V61 B;  5CFK A;  5DAI A;  2HII B;  1ISQ A;  2IO4 A;  3G65 B;  3P83 A;  5IWD A;  3GPN A;  1B77 A;  2IX2 A; 
#chains in the Genus database with same CATH topology
 3P87 A;  2AWA A;  3A1J C;  3FDS C;  3U60 F;  1DML A;  3AIX A;  3A2F B;  1T6L A;  1YYP A;  3LX2 A;  1W60 A;  3A1J A;  5E0T A;  3FDS D;  1RXM A;  3U61 F;  2ZVV A;  3GPM A;  2ZVW A;  4L6P A;  1CZD A;  2HIK C;  1UL1 A;  3HI8 A;  1AXC A;  2IX2 B;  1PLQ A;  5A6D A;  3G65 C;  2IZO C;  2HIK A;  3AIX B;  5AUJ A;  5HAC A;  1RXZ A;  3AIZ C;  5JNE D;  1GE8 A;  1PLR A;  3WGW A;  4TR6 A;  5B7O A;  3A1J B;  3F1W A;  3IFV A;  1IZ5 A;  1SXJ F;  4CS5 A;  5IXA A;  3HSL X;  2IJX A;  1VYM A;  2NTI C;  3AIZ A;  3V62 B;  2IO4 B;  3GGR C;  2HII C;  4YHR A;  1U7B A;  2OD8 A;  2ZVK A;  3TBL A;  2NTI A;  4L60 A;  3GGR A;  2HII A;  5IY4 A;  3I2M X;  2ZVM A;  3LX1 A;  3K4X A;  2Z0L A;  3G65 A;  5DA7 A;  5E0V A;  3VKX A;  2AVT A;  4HK1 A;  3P91 A;  4D2G A;  2IZO B;  3U5Z F;  5H0T A;  1IZ4 A;  5E0U A;  1VYJ A;  1B8H A;  3V60 B;  2IX2 C;  1RWZ A;  2NTI B;  4ZTD A;  2HIK B;  4RJF A;  3GGR B;  1UD9 A;  1U76 A;  2ZVL A;  3V61 B;  5CFK A;  5DAI A;  2HII B;  1ISQ A;  2IO4 A;  3G65 B;  3P83 A;  5IWD A;  3GPN A;  1B77 A;  2IX2 A; 
#chains in the Genus database with same CATH homology
 3P87 A;  2AWA A;  3A1J C;  3FDS C;  3U60 F;  1DML A;  3AIX A;  3A2F B;  1T6L A;  1YYP A;  3LX2 A;  1W60 A;  3A1J A;  5E0T A;  3FDS D;  1RXM A;  3U61 F;  2ZVV A;  3GPM A;  2ZVW A;  4L6P A;  1CZD A;  2HIK C;  1UL1 A;  3HI8 A;  1AXC A;  2IX2 B;  1PLQ A;  5A6D A;  3G65 C;  2IZO C;  2HIK A;  3AIX B;  5AUJ A;  5HAC A;  1RXZ A;  3AIZ C;  5JNE D;  1GE8 A;  1PLR A;  3WGW A;  4TR6 A;  5B7O A;  3A1J B;  3F1W A;  3IFV A;  1IZ5 A;  1SXJ F;  4CS5 A;  5IXA A;  3HSL X;  2IJX A;  1VYM A;  2NTI C;  3AIZ A;  3V62 B;  2IO4 B;  3GGR C;  2HII C;  4YHR A;  1U7B A;  2OD8 A;  2ZVK A;  3TBL A;  2NTI A;  4L60 A;  3GGR A;  2HII A;  5IY4 A;  3I2M X;  2ZVM A;  3LX1 A;  3K4X A;  2Z0L A;  3G65 A;  5DA7 A;  5E0V A;  3VKX A;  2AVT A;  4HK1 A;  3P91 A;  4D2G A;  2IZO B;  3U5Z F;  5H0T A;  1IZ4 A;  5E0U A;  1VYJ A;  1B8H A;  3V60 B;  2IX2 C;  1RWZ A;  2NTI B;  4ZTD A;  2HIK B;  4RJF A;  3GGR B;  1UD9 A;  1U76 A;  2ZVL A;  3V61 B;  5CFK A;  5DAI A;  2HII B;  1ISQ A;  2IO4 A;  3G65 B;  3P83 A;  5IWD A;  3GPN A;  1B77 A;  2IX2 A; 
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