3ITWA

Crystal structure of tiox from micromonospora sp. ml1
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
123
structure length
123
Chain Sequence
GSHMVVELAYTDPDRAVDWLVRVFGFRLLLRQPAIGTIRHADLDTGGGIVMVRRTGEPYTVSCAGGHTCKQVIVWVSDVDEHFMRSTAAGADIVQPLQDKPWGLRQYLVRDLEGHLWEFTRHL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title A New Scaffold of an Old Protein Fold Ensures Binding to the Bisintercalator Thiocoraline.
pubmed doi rcsb
molecule tags Peptide binding protein
source organism Micromonospora sp. ml1
molecule keywords Protein tioX
total genus 31
structure length 123
sequence length 123
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00903 Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.110 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 3itwA02
3.30.720.120 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 3itwA01
1U7IA 3BT3A 3SK1A 3ITWA 2KJZA 3OMSA 3VCXA
chains in the Genus database with same CATH superfamily
4GYWA 3GYXB 5BNWA 1E8OB 4N39A 3OMSA 3VCXA 2FFGA 2W9JA 5AOXA 2X5GA 2K4NA 2FJAB 4N3AA 1U7IA 3BT3A 4GZ6A 3ITWA 3SK1A 1E8OA 3TAXA 2A90A 2DK6A 4UYKB 4CDRA 2FJEB 3V3LA 2FJBB 4N3CA 1JNZB 2RSFA 4XI9A 1914A 1UJRA 2KJZA 5C1DA 4UYKA 2FJDB 4GZ5A 4XIFA 1X4RA 1QMOE 3PE3A 4AY6A 4UYJB 4GYYA 3PE4A 4GZ3A 3TU3B 2X5TA 4AKXB 2X5HA 1JNRB 4N3BA 5AOXB 4UYJA 4AY5A
chains in the Genus database with same CATH topology
4GYWA 3GYXB 5BNWA 1E8OB 4N39A 3OMSA 3VCXA 2FFGA 2W9JA 5AOXA 2X5GA 2K4NA 2FJAB 4N3AA 1U7IA 3BT3A 4GZ6A 3ITWA 3SK1A 1E8OA 3TAXA 2A90A 2DK6A 4UYKB 4CDRA 2FJEB 3V3LA 2FJBB 4N3CA 1JNZB 2RSFA 4XI9A 1914A 1UJRA 2KJZA 5C1DA 4UYKA 2FJDB 4GZ5A 4XIFA 1X4RA 1QMOE 3PE3A 4AY6A 4UYJB 4GYYA 3PE4A 4GZ3A 3TU3B 2X5TA 4AKXB 2X5HA 1JNRB 4N3BA 5AOXB 4UYJA 4AY5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U7I A;  3BT3 A;  3SK1 A;  3ITW A;  2KJZ A;  3OMS A;  3VCX A; 
#chains in the Genus database with same CATH topology
 4GYW A;  3GYX B;  5BNW A;  1E8O B;  4N39 A;  3OMS A;  3VCX A;  2FFG A;  2W9J A;  5AOX A;  2X5G A;  2K4N A;  2FJA B;  4N3A A;  1U7I A;  3BT3 A;  4GZ6 A;  3ITW A;  3SK1 A;  1E8O A;  3TAX A;  2A90 A;  2DK6 A;  4UYK B;  4CDR A;  2FJE B;  3V3L A;  2FJB B;  4N3C A;  1JNZ B;  2RSF A;  4XI9 A;  1914 A;  1UJR A;  2KJZ A;  5C1D A;  4UYK A;  2FJD B;  4GZ5 A;  4XIF A;  1X4R A;  1QMO E;  3PE3 A;  4AY6 A;  4UYJ B;  4GYY A;  3PE4 A;  4GZ3 A;  3TU3 B;  2X5T A;  4AKX B;  2X5H A;  1JNR B;  4N3B A;  5AOX B;  4UYJ A;  4AY5 A; 
#chains in the Genus database with same CATH homology
 4GYW A;  3GYX B;  5BNW A;  1E8O B;  4N39 A;  3OMS A;  3VCX A;  2FFG A;  2W9J A;  5AOX A;  2X5G A;  2K4N A;  2FJA B;  4N3A A;  1U7I A;  3BT3 A;  4GZ6 A;  3ITW A;  3SK1 A;  1E8O A;  3TAX A;  2A90 A;  2DK6 A;  4UYK B;  4CDR A;  2FJE B;  3V3L A;  2FJB B;  4N3C A;  1JNZ B;  2RSF A;  4XI9 A;  1914 A;  1UJR A;  2KJZ A;  5C1D A;  4UYK A;  2FJD B;  4GZ5 A;  4XIF A;  1X4R A;  1QMO E;  3PE3 A;  4AY6 A;  4UYJ B;  4GYY A;  3PE4 A;  4GZ3 A;  3TU3 B;  2X5T A;  4AKX B;  2X5H A;  1JNR B;  4N3B A;  5AOX B;  4UYJ A;  4AY5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...