The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
83
|
structure length |
83
|
Chain Sequence |
GEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRLD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| molecule keywords |
E3 ubiquitin-protein ligase RNF146
|
| publication title |
Recognition of the iso-ADP-ribose moiety in poly(ADP-ribose) by WWE domains suggests a general mechanism for poly(ADP-ribosyl)ation-dependent ubiquitination.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
17
|
| structure length |
83
|
| sequence length |
83
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.3.2.27: RING-type E3 ubiquitin transferase. |
| pdb deposition date | 2011-12-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02825 | WWE | WWE domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | Signal recognition particle alu RNA binding heterodimer, srp9/1 |
#chains in the Genus database with same CATH superfamily 2DK6 A; 2A90 A; 3V3L A; 1X4R A; 1UJR A; 2RSF A; #chains in the Genus database with same CATH topology 4N3B A; 3PE4 A; 1914 A; 2DK6 A; 2A90 A; 2FJB B; 4AY6 A; 2RSF A; 3OMS A; 3ITW A; 4N39 A; 5AOX A; 1U7I A; 4GZ3 A; 2W9J A; 4UYJ B; 3SK1 A; 1QMO E; 2FJA B; 3VCX A; 3TAX A; 1X4R A; 4UYK B; 1UJR A; 2X5T A; 3GYX B; 4GYW A; 3BT3 A; 5BNW A; 2KJZ A; 4N3C A; 3V3L A; 4UYJ A; 2X5H A; 5C1D A; 1E8O B; 4GYY A; 4CDR A; 4UYK A; 1JNR B; 2FJE B; 2FJD B; 4GZ5 A; 3TU3 B; 4N3A A; 4AY5 A; 4AKX B; 2K4N A; 4XI9 A; 2X5G A; 2FFG A; 3PE3 A; 5AOX B; 4XIF A; 1E8O A; 1JNZ B; 4GZ6 A; #chains in the Genus database with same CATH homology 4N3B A; 3PE4 A; 1914 A; 2DK6 A; 2A90 A; 2FJB B; 4AY6 A; 2RSF A; 3OMS A; 3ITW A; 4N39 A; 5AOX A; 1U7I A; 4GZ3 A; 2W9J A; 4UYJ B; 3SK1 A; 1QMO E; 2FJA B; 3VCX A; 3TAX A; 1X4R A; 4UYK B; 1UJR A; 2X5T A; 3GYX B; 4GYW A; 3BT3 A; 5BNW A; 2KJZ A; 4N3C A; 3V3L A; 4UYJ A; 2X5H A; 5C1D A; 1E8O B; 4GYY A; 4CDR A; 4UYK A; 1JNR B; 2FJE B; 2FJD B; 4GZ5 A; 3TU3 B; 4N3A A; 4AY5 A; 4AKX B; 2K4N A; 4XI9 A; 2X5G A; 2FFG A; 3PE3 A; 5AOX B; 4XIF A; 1E8O A; 1JNZ B; 4GZ6 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
