3LX2 | Genus

Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	55
sequence length	247
structure length	247
Chain Sequence	TFEIVFDSAREFESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFDLKRFLKVLKLARSRDTLVLRKGGENFLEVGLLGDENTWFKLPLIDANTPEIEIPSLPWTVKAVVLAGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 247 atoms

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247 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Thermococcus kodakarensis
publication title	Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. pubmed doi rcsb
molecule keywords	DNA polymerase sliding clamp 2
total genus	55
structure length	247
sequence length	247
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2010-02-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	3lx2A00

1ISQA 3IFVA 2AVTA 4D2GA 3V62B 2IX2B 3U5ZF 2IX2A 3TBLA 3LX2A 3WGWA 5E0UA 3AIZA 1GE8A 1VYMA 1U7BA 2ZVMA 3G65C 3FDSC 2ZVLA 2HIIC 1UD9A 5DA7A 5E0VA 4L6PA 1T6LA 1U76A 2OD8A 3U61F 5IXAA 1SXJF 2AWAA 4HK1A 2Z0LA 1UL1A 3K4XA 3GGRC 3A1JC 1YYPA 5H0TA 3P83A 3AIXB 2IJXA 3HSLX 3AIXA 2NTIB 2IZOB 2HIKB 3I2MX 2NTIA 1W60A 3P87A 4RJFA 2IX2C 4CS5A 1IZ4A 3AIZC 1B77A 5IWDA 5JNED 2ZVVA 3HI8A 3V61B 3A2FB 1VYJA 3F1WA 2IO4B 2ZVWA 5AUJA 2IO4A 1AXCA 5E0TA 5CFKA 3P91A 1RXZA 3G65B 1PLQA 5DAIA 3GPMA 3GPNA 1IZ5A 3G65A 2HIIB 2HIKA 5B7OA 5HACA 2HIIA 3LX1A 4TR6A 5A6DA 4L60A 2ZVKA 3FDSD 3U60F 4ZTDA 1RWZA 3GGRB 3A1JB 2NTIC 2IZOC 3V60B 2HIKC 3GGRA 4YHRA 1B8HA 1PLRA 1DMLA 3A1JA 5IY4A 3VKXA 1CZDA 1RXMA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1ISQ A;  3IFV A;  2AVT A;  4D2G A;  3V62 B;  2IX2 B;  3U5Z F;  2IX2 A;  3TBL A;  3LX2 A;  3WGW A;  5E0U A;  3AIZ A;  1GE8 A;  1VYM A;  1U7B A;  2ZVM A;  3G65 C;  3FDS C;  2ZVL A;  2HII C;  1UD9 A;  5DA7 A;  5E0V A;  4L6P A;  1T6L A;  1U76 A;  2OD8 A;  3U61 F;  5IXA A;  1SXJ F;  2AWA A;  4HK1 A;  2Z0L A;  1UL1 A;  3K4X A;  3GGR C;  3A1J C;  1YYP A;  5H0T A;  3P83 A;  3AIX B;  2IJX A;  3HSL X;  3AIX A;  2NTI B;  2IZO B;  2HIK B;  3I2M X;  2NTI A;  1W60 A;  3P87 A;  4RJF A;  2IX2 C;  4CS5 A;  1IZ4 A;  3AIZ C;  1B77 A;  5IWD A;  5JNE D;  2ZVV A;  3HI8 A;  3V61 B;  3A2F B;  1VYJ A;  3F1W A;  2IO4 B;  2ZVW A;  5AUJ A;  2IO4 A;  1AXC A;  5E0T A;  5CFK A;  3P91 A;  1RXZ A;  3G65 B;  1PLQ A;  5DAI A;  3GPM A;  3GPN A;  1IZ5 A;  3G65 A;  2HII B;  2HIK A;  5B7O A;  5HAC A;  2HII A;  3LX1 A;  4TR6 A;  5A6D A;  4L60 A;  2ZVK A;  3FDS D;  3U60 F;  4ZTD A;  1RWZ A;  3GGR B;  3A1J B;  2NTI C;  2IZO C;  3V60 B;  2HIK C;  3GGR A;  4YHR A;  1B8H A;  1PLR A;  1DML A;  3A1J A;  5IY4 A;  3VKX A;  1CZD A;  1RXM A; 
#chains in the Genus database with same CATH topology
 1ISQ A;  3IFV A;  2AVT A;  4D2G A;  3V62 B;  2IX2 B;  3U5Z F;  2IX2 A;  3TBL A;  3LX2 A;  3WGW A;  5E0U A;  3AIZ A;  1GE8 A;  1VYM A;  1U7B A;  2ZVM A;  3G65 C;  3FDS C;  2ZVL A;  2HII C;  1UD9 A;  5DA7 A;  5E0V A;  4L6P A;  1T6L A;  1U76 A;  2OD8 A;  3U61 F;  5IXA A;  1SXJ F;  2AWA A;  4HK1 A;  2Z0L A;  1UL1 A;  3K4X A;  3GGR C;  3A1J C;  1YYP A;  5H0T A;  3P83 A;  3AIX B;  2IJX A;  3HSL X;  3AIX A;  2NTI B;  2IZO B;  2HIK B;  3I2M X;  2NTI A;  1W60 A;  3P87 A;  4RJF A;  2IX2 C;  4CS5 A;  1IZ4 A;  3AIZ C;  1B77 A;  5IWD A;  5JNE D;  2ZVV A;  3HI8 A;  3V61 B;  3A2F B;  1VYJ A;  3F1W A;  2IO4 B;  2ZVW A;  5AUJ A;  2IO4 A;  1AXC A;  5E0T A;  5CFK A;  3P91 A;  1RXZ A;  3G65 B;  1PLQ A;  5DAI A;  3GPM A;  3GPN A;  1IZ5 A;  3G65 A;  2HII B;  2HIK A;  5B7O A;  5HAC A;  2HII A;  3LX1 A;  4TR6 A;  5A6D A;  4L60 A;  2ZVK A;  3FDS D;  3U60 F;  4ZTD A;  1RWZ A;  3GGR B;  3A1J B;  2NTI C;  2IZO C;  3V60 B;  2HIK C;  3GGR A;  4YHR A;  1B8H A;  1PLR A;  1DML A;  3A1J A;  5IY4 A;  3VKX A;  1CZD A;  1RXM A; 
#chains in the Genus database with same CATH homology
 1ISQ A;  3IFV A;  2AVT A;  4D2G A;  3V62 B;  2IX2 B;  3U5Z F;  2IX2 A;  3TBL A;  3LX2 A;  3WGW A;  5E0U A;  3AIZ A;  1GE8 A;  1VYM A;  1U7B A;  2ZVM A;  3G65 C;  3FDS C;  2ZVL A;  2HII C;  1UD9 A;  5DA7 A;  5E0V A;  4L6P A;  1T6L A;  1U76 A;  2OD8 A;  3U61 F;  5IXA A;  1SXJ F;  2AWA A;  4HK1 A;  2Z0L A;  1UL1 A;  3K4X A;  3GGR C;  3A1J C;  1YYP A;  5H0T A;  3P83 A;  3AIX B;  2IJX A;  3HSL X;  3AIX A;  2NTI B;  2IZO B;  2HIK B;  3I2M X;  2NTI A;  1W60 A;  3P87 A;  4RJF A;  2IX2 C;  4CS5 A;  1IZ4 A;  3AIZ C;  1B77 A;  5IWD A;  5JNE D;  2ZVV A;  3HI8 A;  3V61 B;  3A2F B;  1VYJ A;  3F1W A;  2IO4 B;  2ZVW A;  5AUJ A;  2IO4 A;  1AXC A;  5E0T A;  5CFK A;  3P91 A;  1RXZ A;  3G65 B;  1PLQ A;  5DAI A;  3GPM A;  3GPN A;  1IZ5 A;  3G65 A;  2HII B;  2HIK A;  5B7O A;  5HAC A;  2HII A;  3LX1 A;  4TR6 A;  5A6D A;  4L60 A;  2ZVK A;  3FDS D;  3U60 F;  4ZTD A;  1RWZ A;  3GGR B;  3A1J B;  2NTI C;  2IZO C;  3V60 B;  2HIK C;  3GGR A;  4YHR A;  1B8H A;  1PLR A;  1DML A;  3A1J A;  5IY4 A;  3VKX A;  1CZD A;  1RXM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LX2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations