3O2R | Genus

Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	59
sequence length	144
structure length	144
Chain Sequence	NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 144 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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144 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Campylobacter jejuni subsp. jejuni
publication title	Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (rnc) from Campylobacter jejuni. rcsb
molecule keywords	Ribonuclease III
total genus	59
structure length	144
sequence length	144
chains with identical sequence	C
ec nomenclature	ec 3.1.26.3: Ribonuclease III.
pdb deposition date	2010-07-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14622	Ribonucleas_3_3	Ribonuclease-III-like

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1520.10	Mainly Alpha	Orthogonal Bundle	Ribonuclease iii, N-terminal Endonuclease Domain; Chain A	Ribonuclease III domain	3o2rA00

2EB1A 1YYWA 2NUFA 2EZ6A 2GSLA 4OUNA 1RC5A 1YYOA 1JFZA 3O2RA 2FFLA 3N3WA 1RC7A 3C4TA 3O2RB 2NUGA 2A11A 4M30A 3RV1A 1I4SA 1U61A 2NUEA 3C4BA 4M2ZA 4OOGC 1O0WA 1YYKA 3RV0A 2QVWA 1YZ9A
chains in the Genus database with same CATH superfamily

2EB1A 1YYWA 2NUFA 2EZ6A 2GSLA 4OUNA 1RC5A 1YYOA 1JFZA 1ZTDA 3O2RA 2FFLA 3N3WA 1RC7A 3C4TA 3O2RB 2NUGA 2A11A 4M30A 3RV1A 1I4SA 1U61A 2NUEA 3C4BA 4M2ZA 4OOGC 1O0WA 1YYKA 3RV0A 2QVWA 1YZ9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2EB1 A;  1YYW A;  2NUF A;  2EZ6 A;  2GSL A;  4OUN A;  1RC5 A;  1YYO A;  1JFZ A;  3O2R A;  2FFL A;  3N3W A;  1RC7 A;  3C4T A;  3O2R B;  2NUG A;  2A11 A;  4M30 A;  3RV1 A;  1I4S A;  1U61 A;  2NUE A;  3C4B A;  4M2Z A;  4OOG C;  1O0W A;  1YYK A;  3RV0 A;  2QVW A;  1YZ9 A; 
#chains in the Genus database with same CATH topology
 2EB1 A;  1YYW A;  2NUF A;  2EZ6 A;  2GSL A;  4OUN A;  1RC5 A;  1YYO A;  1JFZ A;  1ZTD A;  3O2R A;  2FFL A;  3N3W A;  1RC7 A;  3C4T A;  3O2R B;  2NUG A;  2A11 A;  4M30 A;  3RV1 A;  1I4S A;  1U61 A;  2NUE A;  3C4B A;  4M2Z A;  4OOG C;  1O0W A;  1YYK A;  3RV0 A;  2QVW A;  1YZ9 A; 
#chains in the Genus database with same CATH homology
 2EB1 A;  1YYW A;  2NUF A;  2EZ6 A;  2GSL A;  4OUN A;  1RC5 A;  1YYO A;  1JFZ A;  3O2R A;  2FFL A;  3N3W A;  1RC7 A;  3C4T A;  3O2R B;  2NUG A;  2A11 A;  4M30 A;  3RV1 A;  1I4S A;  1U61 A;  2NUE A;  3C4B A;  4M2Z A;  4OOG C;  1O0W A;  1YYK A;  3RV0 A;  2QVW A;  1YZ9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3O2RA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations