3P83A

Structure of the pcna:rnase hii complex from archaeoglobus fulgidus.
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
244
structure length
244
Chain Sequence
MIDVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna binding protein
source organism Archaeoglobus fulgidus
publication title PCNA directs type 2 RNase H activity on DNA replication and repair substrates.
pubmed doi rcsb
molecule keywords DNA polymerase sliding clamp
total genus 63
structure length 244
sequence length 244
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3p83A00
5IXAA 3GPNA 1B77A 1GE8A 3A1JC 1VYJA 2Z0LA 3FDSC 5H0TA 3V62B 2IX2A 3G65B 4ZTDA 1RWZA 3U5ZF 3AIZC 5HACA 1U76A 3P87A 2HIIA 3WGWA 1ISQA 3A2FB 2ZVLA 5DA7A 4D2GA 2NTIB 3LX2A 3V60B 2IO4B 1U7BA 5IY4A 5JNED 5E0UA 4L60A 5CFKA 3FDSD 5E0VA 3A1JA 1RXZA 2OD8A 2NTIC 2ZVVA 3F1WA 2IO4A 3AIZA 1IZ5A 5IWDA 1DMLA 3LX1A 4YHRA 3I2MX 4TR6A 5DAIA 3VKXA 3U61F 1SXJF 1IZ4A 1VYMA 3IFVA 3GPMA 2IJXA 1PLQA 2HIKC 3G65A 1UD9A 3P91A 2AVTA 3AIXB 4L6PA 3TBLA 2NTIA 2IZOB 5E0TA 5AUJA 2HIKB 1RXMA 2AWAA 2ZVKA 1UL1A 1PLRA 2ZVWA 5B7OA 3AIXA 1AXCA 3HI8A 2IZOC 3P83A 3GGRC 2HIKA 1B8HA 2ZVMA 3V61B 2IX2C 1W60A 1CZDA 3GGRB 2HIIC 5A6DA 3U60F 1YYPA 3A1JB 3K4XA 3G65C 2IX2B 3GGRA 1T6LA 4CS5A 3HSLX 4HK1A 2HIIB 4RJFA
chains in the Genus database with same CATH superfamily
5IXAA 3GPNA 1B77A 1GE8A 3A1JC 1VYJA 2Z0LA 3FDSC 5H0TA 3V62B 2IX2A 3G65B 4ZTDA 1RWZA 3U5ZF 3AIZC 5HACA 1U76A 3P87A 2HIIA 3WGWA 1ISQA 3A2FB 2ZVLA 5DA7A 4D2GA 2NTIB 3LX2A 3V60B 2IO4B 1U7BA 5IY4A 5JNED 5E0UA 4L60A 5CFKA 3FDSD 5E0VA 3A1JA 1RXZA 2OD8A 2NTIC 2ZVVA 3F1WA 2IO4A 3AIZA 1IZ5A 5IWDA 1DMLA 3LX1A 4YHRA 3I2MX 4TR6A 5DAIA 3VKXA 3U61F 1SXJF 1IZ4A 1VYMA 3IFVA 3GPMA 2IJXA 1PLQA 2HIKC 3G65A 1UD9A 3P91A 2AVTA 3AIXB 4L6PA 3TBLA 2NTIA 2IZOB 5E0TA 5AUJA 2HIKB 1RXMA 2AWAA 2ZVKA 1UL1A 1PLRA 2ZVWA 5B7OA 3AIXA 1AXCA 3HI8A 2IZOC 3P83A 3GGRC 2HIKA 1B8HA 2ZVMA 3V61B 2IX2C 1W60A 1CZDA 3GGRB 2HIIC 5A6DA 3U60F 1YYPA 3A1JB 3K4XA 3G65C 2IX2B 3GGRA 1T6LA 4CS5A 3HSLX 4HK1A 2HIIB 4RJFA
chains in the Genus database with same CATH topology
5IXAA 3GPNA 1B77A 1GE8A 3A1JC 1VYJA 2Z0LA 3FDSC 5H0TA 3V62B 2IX2A 3G65B 4ZTDA 1RWZA 3U5ZF 3AIZC 5HACA 1U76A 3P87A 2HIIA 3WGWA 1ISQA 3A2FB 2ZVLA 5DA7A 4D2GA 2NTIB 3LX2A 3V60B 2IO4B 1U7BA 5IY4A 5JNED 5E0UA 4L60A 5CFKA 3FDSD 5E0VA 3A1JA 1RXZA 2OD8A 2NTIC 2ZVVA 3F1WA 2IO4A 3AIZA 1IZ5A 5IWDA 1DMLA 3LX1A 4YHRA 3I2MX 4TR6A 5DAIA 3VKXA 3U61F 1SXJF 1IZ4A 1VYMA 3IFVA 3GPMA 2IJXA 1PLQA 2HIKC 3G65A 1UD9A 3P91A 2AVTA 3AIXB 4L6PA 3TBLA 2NTIA 2IZOB 5E0TA 5AUJA 2HIKB 1RXMA 2AWAA 2ZVKA 1UL1A 1PLRA 2ZVWA 5B7OA 3AIXA 1AXCA 3HI8A 2IZOC 3P83A 3GGRC 2HIKA 1B8HA 2ZVMA 3V61B 2IX2C 1W60A 1CZDA 3GGRB 2HIIC 5A6DA 3U60F 1YYPA 3A1JB 3K4XA 3G65C 2IX2B 3GGRA 1T6LA 4CS5A 3HSLX 4HK1A 2HIIB 4RJFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IXA A;  3GPN A;  1B77 A;  1GE8 A;  3A1J C;  1VYJ A;  2Z0L A;  3FDS C;  5H0T A;  3V62 B;  2IX2 A;  3G65 B;  4ZTD A;  1RWZ A;  3U5Z F;  3AIZ C;  5HAC A;  1U76 A;  3P87 A;  2HII A;  3WGW A;  1ISQ A;  3A2F B;  2ZVL A;  5DA7 A;  4D2G A;  2NTI B;  3LX2 A;  3V60 B;  2IO4 B;  1U7B A;  5IY4 A;  5JNE D;  5E0U A;  4L60 A;  5CFK A;  3FDS D;  5E0V A;  3A1J A;  1RXZ A;  2OD8 A;  2NTI C;  2ZVV A;  3F1W A;  2IO4 A;  3AIZ A;  1IZ5 A;  5IWD A;  1DML A;  3LX1 A;  4YHR A;  3I2M X;  4TR6 A;  5DAI A;  3VKX A;  3U61 F;  1SXJ F;  1IZ4 A;  1VYM A;  3IFV A;  3GPM A;  2IJX A;  1PLQ A;  2HIK C;  3G65 A;  1UD9 A;  3P91 A;  2AVT A;  3AIX B;  4L6P A;  3TBL A;  2NTI A;  2IZO B;  5E0T A;  5AUJ A;  2HIK B;  1RXM A;  2AWA A;  2ZVK A;  1UL1 A;  1PLR A;  2ZVW A;  5B7O A;  3AIX A;  1AXC A;  3HI8 A;  2IZO C;  3P83 A;  3GGR C;  2HIK A;  1B8H A;  2ZVM A;  3V61 B;  2IX2 C;  1W60 A;  1CZD A;  3GGR B;  2HII C;  5A6D A;  3U60 F;  1YYP A;  3A1J B;  3K4X A;  3G65 C;  2IX2 B;  3GGR A;  1T6L A;  4CS5 A;  3HSL X;  4HK1 A;  2HII B;  4RJF A; 
#chains in the Genus database with same CATH topology
 5IXA A;  3GPN A;  1B77 A;  1GE8 A;  3A1J C;  1VYJ A;  2Z0L A;  3FDS C;  5H0T A;  3V62 B;  2IX2 A;  3G65 B;  4ZTD A;  1RWZ A;  3U5Z F;  3AIZ C;  5HAC A;  1U76 A;  3P87 A;  2HII A;  3WGW A;  1ISQ A;  3A2F B;  2ZVL A;  5DA7 A;  4D2G A;  2NTI B;  3LX2 A;  3V60 B;  2IO4 B;  1U7B A;  5IY4 A;  5JNE D;  5E0U A;  4L60 A;  5CFK A;  3FDS D;  5E0V A;  3A1J A;  1RXZ A;  2OD8 A;  2NTI C;  2ZVV A;  3F1W A;  2IO4 A;  3AIZ A;  1IZ5 A;  5IWD A;  1DML A;  3LX1 A;  4YHR A;  3I2M X;  4TR6 A;  5DAI A;  3VKX A;  3U61 F;  1SXJ F;  1IZ4 A;  1VYM A;  3IFV A;  3GPM A;  2IJX A;  1PLQ A;  2HIK C;  3G65 A;  1UD9 A;  3P91 A;  2AVT A;  3AIX B;  4L6P A;  3TBL A;  2NTI A;  2IZO B;  5E0T A;  5AUJ A;  2HIK B;  1RXM A;  2AWA A;  2ZVK A;  1UL1 A;  1PLR A;  2ZVW A;  5B7O A;  3AIX A;  1AXC A;  3HI8 A;  2IZO C;  3P83 A;  3GGR C;  2HIK A;  1B8H A;  2ZVM A;  3V61 B;  2IX2 C;  1W60 A;  1CZD A;  3GGR B;  2HII C;  5A6D A;  3U60 F;  1YYP A;  3A1J B;  3K4X A;  3G65 C;  2IX2 B;  3GGR A;  1T6L A;  4CS5 A;  3HSL X;  4HK1 A;  2HII B;  4RJF A; 
#chains in the Genus database with same CATH homology
 5IXA A;  3GPN A;  1B77 A;  1GE8 A;  3A1J C;  1VYJ A;  2Z0L A;  3FDS C;  5H0T A;  3V62 B;  2IX2 A;  3G65 B;  4ZTD A;  1RWZ A;  3U5Z F;  3AIZ C;  5HAC A;  1U76 A;  3P87 A;  2HII A;  3WGW A;  1ISQ A;  3A2F B;  2ZVL A;  5DA7 A;  4D2G A;  2NTI B;  3LX2 A;  3V60 B;  2IO4 B;  1U7B A;  5IY4 A;  5JNE D;  5E0U A;  4L60 A;  5CFK A;  3FDS D;  5E0V A;  3A1J A;  1RXZ A;  2OD8 A;  2NTI C;  2ZVV A;  3F1W A;  2IO4 A;  3AIZ A;  1IZ5 A;  5IWD A;  1DML A;  3LX1 A;  4YHR A;  3I2M X;  4TR6 A;  5DAI A;  3VKX A;  3U61 F;  1SXJ F;  1IZ4 A;  1VYM A;  3IFV A;  3GPM A;  2IJX A;  1PLQ A;  2HIK C;  3G65 A;  1UD9 A;  3P91 A;  2AVT A;  3AIX B;  4L6P A;  3TBL A;  2NTI A;  2IZO B;  5E0T A;  5AUJ A;  2HIK B;  1RXM A;  2AWA A;  2ZVK A;  1UL1 A;  1PLR A;  2ZVW A;  5B7O A;  3AIX A;  1AXC A;  3HI8 A;  2IZO C;  3P83 A;  3GGR C;  2HIK A;  1B8H A;  2ZVM A;  3V61 B;  2IX2 C;  1W60 A;  1CZD A;  3GGR B;  2HII C;  5A6D A;  3U60 F;  1YYP A;  3A1J B;  3K4X A;  3G65 C;  2IX2 B;  3GGR A;  1T6L A;  4CS5 A;  3HSL X;  4HK1 A;  2HII B;  4RJF A; 
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similar chains in the Genus database (?% sequence similarity)
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