3U61F

Structure of t4 bacteriophage clamp loader bound to closed clamp, dna and atp analog and adp
Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
222
structure length
222
Chain Sequence
MKLSKDTTALLKNFATINSGIMLKSGQFIMTRAVNGTTYAEANISDVIDFDVAIYDLNGFLGILSLVNDDAEISQSEDGNIKIADARSTIFWPAADPSTVVAPNKPIPFPVASAVTEIKAEDLQQLLRVSRGLQIDTIAITVKEGKIVINGFNKVEDSALTRVKYSLTLGDYDGENTFNFIINMANMKMQPGNYKLLLWAKGKQGAAKFEGEHANYVVALEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Dna binding protein/dna
source organism Enterobacteria phage t4
publication title How a DNA polymerase clamp loader opens a sliding clamp.
pubmed doi rcsb
molecule keywords DNA polymerase accessory protein 44
total genus 44
structure length 222
sequence length 222
chains with identical sequence G, H
ec nomenclature
pdb deposition date 2011-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF02916 DNA_PPF DNA polymerase processivity factor
F PF09116 gp45-slide_C gp45 sliding clamp, C terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3u61F00
5IWDA 2NTIC 3AIZA 5IXAA 2IX2B 2ZVMA 2NTIA 5DAIA 1YYPA 1RXZA 4CS5A 5E0TA 1B8HA 3A2FB 2ZVLA 2IZOB 1DMLA 1PLRA 4TR6A 3F1WA 5DA7A 3WGWA 2IX2C 3P83A 5A6DA 2HIIA 3GPMA 3K4XA 1PLQA 1RWZA 3LX1A 2IO4B 1UL1A 3U61F 2IX2A 2HIIC 5HACA 3HI8A 3AIXA 3TBLA 1ISQA 3GGRB 2IZOC 4L6PA 3IFVA 3V62B 1UD9A 3P91A 1U7BA 2HIKC 3A1JB 4ZTDA 2HIKB 1GE8A 3V60B 5B7OA 1VYMA 2ZVKA 2Z0LA 3VKXA 3LX2A 5CFKA 1B77A 3FDSC 5IY4A 1T6LA 1IZ5A 3HSLX 3FDSD 1U76A 2AWAA 3I2MX 4HK1A 5E0UA 3GGRC 1CZDA 4YHRA 2IO4A 2ZVWA 3G65B 1SXJF 5AUJA 1RXMA 1VYJA 1AXCA 2OD8A 3GGRA 2AVTA 3U5ZF 5E0VA 3GPNA 3A1JC 2ZVVA 2HIIB 3A1JA 5JNED 1W60A 2HIKA 2NTIB 4D2GA 3AIXB 4RJFA 5H0TA 3U60F 4L60A 3G65C 3V61B 3G65A 1IZ4A 3P87A 2IJXA 3AIZC
chains in the Genus database with same CATH superfamily
5IWDA 2NTIC 3AIZA 5IXAA 2IX2B 2ZVMA 2NTIA 5DAIA 1YYPA 1RXZA 4CS5A 5E0TA 1B8HA 3A2FB 2ZVLA 2IZOB 1DMLA 1PLRA 4TR6A 3F1WA 5DA7A 3WGWA 2IX2C 3P83A 5A6DA 2HIIA 3GPMA 3K4XA 1PLQA 1RWZA 3LX1A 2IO4B 1UL1A 3U61F 2IX2A 2HIIC 5HACA 3HI8A 3AIXA 3TBLA 1ISQA 3GGRB 2IZOC 4L6PA 3IFVA 3V62B 1UD9A 3P91A 1U7BA 2HIKC 3A1JB 4ZTDA 2HIKB 1GE8A 3V60B 5B7OA 1VYMA 2ZVKA 2Z0LA 3VKXA 3LX2A 5CFKA 1B77A 3FDSC 5IY4A 1T6LA 1IZ5A 3HSLX 3FDSD 1U76A 2AWAA 3I2MX 4HK1A 5E0UA 3GGRC 1CZDA 4YHRA 2IO4A 2ZVWA 3G65B 1SXJF 5AUJA 1RXMA 1VYJA 1AXCA 2OD8A 3GGRA 2AVTA 3U5ZF 5E0VA 3GPNA 3A1JC 2ZVVA 2HIIB 3A1JA 5JNED 1W60A 2HIKA 2NTIB 4D2GA 3AIXB 4RJFA 5H0TA 3U60F 4L60A 3G65C 3V61B 3G65A 1IZ4A 3P87A 2IJXA 3AIZC
chains in the Genus database with same CATH topology
5IWDA 2NTIC 3AIZA 5IXAA 2IX2B 2ZVMA 2NTIA 5DAIA 1YYPA 1RXZA 4CS5A 5E0TA 1B8HA 3A2FB 2ZVLA 2IZOB 1DMLA 1PLRA 4TR6A 3F1WA 5DA7A 3WGWA 2IX2C 3P83A 5A6DA 2HIIA 3GPMA 3K4XA 1PLQA 1RWZA 3LX1A 2IO4B 1UL1A 3U61F 2IX2A 2HIIC 5HACA 3HI8A 3AIXA 3TBLA 1ISQA 3GGRB 2IZOC 4L6PA 3IFVA 3V62B 1UD9A 3P91A 1U7BA 2HIKC 3A1JB 4ZTDA 2HIKB 1GE8A 3V60B 5B7OA 1VYMA 2ZVKA 2Z0LA 3VKXA 3LX2A 5CFKA 1B77A 3FDSC 5IY4A 1T6LA 1IZ5A 3HSLX 3FDSD 1U76A 2AWAA 3I2MX 4HK1A 5E0UA 3GGRC 1CZDA 4YHRA 2IO4A 2ZVWA 3G65B 1SXJF 5AUJA 1RXMA 1VYJA 1AXCA 2OD8A 3GGRA 2AVTA 3U5ZF 5E0VA 3GPNA 3A1JC 2ZVVA 2HIIB 3A1JA 5JNED 1W60A 2HIKA 2NTIB 4D2GA 3AIXB 4RJFA 5H0TA 3U60F 4L60A 3G65C 3V61B 3G65A 1IZ4A 3P87A 2IJXA 3AIZC
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5IWD A;  2NTI C;  3AIZ A;  5IXA A;  2IX2 B;  2ZVM A;  2NTI A;  5DAI A;  1YYP A;  1RXZ A;  4CS5 A;  5E0T A;  1B8H A;  3A2F B;  2ZVL A;  2IZO B;  1DML A;  1PLR A;  4TR6 A;  3F1W A;  5DA7 A;  3WGW A;  2IX2 C;  3P83 A;  5A6D A;  2HII A;  3GPM A;  3K4X A;  1PLQ A;  1RWZ A;  3LX1 A;  2IO4 B;  1UL1 A;  3U61 F;  2IX2 A;  2HII C;  5HAC A;  3HI8 A;  3AIX A;  3TBL A;  1ISQ A;  3GGR B;  2IZO C;  4L6P A;  3IFV A;  3V62 B;  1UD9 A;  3P91 A;  1U7B A;  2HIK C;  3A1J B;  4ZTD A;  2HIK B;  1GE8 A;  3V60 B;  5B7O A;  1VYM A;  2ZVK A;  2Z0L A;  3VKX A;  3LX2 A;  5CFK A;  1B77 A;  3FDS C;  5IY4 A;  1T6L A;  1IZ5 A;  3HSL X;  3FDS D;  1U76 A;  2AWA A;  3I2M X;  4HK1 A;  5E0U A;  3GGR C;  1CZD A;  4YHR A;  2IO4 A;  2ZVW A;  3G65 B;  1SXJ F;  5AUJ A;  1RXM A;  1VYJ A;  1AXC A;  2OD8 A;  3GGR A;  2AVT A;  3U5Z F;  5E0V A;  3GPN A;  3A1J C;  2ZVV A;  2HII B;  3A1J A;  5JNE D;  1W60 A;  2HIK A;  2NTI B;  4D2G A;  3AIX B;  4RJF A;  5H0T A;  3U60 F;  4L60 A;  3G65 C;  3V61 B;  3G65 A;  1IZ4 A;  3P87 A;  2IJX A;  3AIZ C; 
#chains in the Genus database with same CATH topology
 5IWD A;  2NTI C;  3AIZ A;  5IXA A;  2IX2 B;  2ZVM A;  2NTI A;  5DAI A;  1YYP A;  1RXZ A;  4CS5 A;  5E0T A;  1B8H A;  3A2F B;  2ZVL A;  2IZO B;  1DML A;  1PLR A;  4TR6 A;  3F1W A;  5DA7 A;  3WGW A;  2IX2 C;  3P83 A;  5A6D A;  2HII A;  3GPM A;  3K4X A;  1PLQ A;  1RWZ A;  3LX1 A;  2IO4 B;  1UL1 A;  3U61 F;  2IX2 A;  2HII C;  5HAC A;  3HI8 A;  3AIX A;  3TBL A;  1ISQ A;  3GGR B;  2IZO C;  4L6P A;  3IFV A;  3V62 B;  1UD9 A;  3P91 A;  1U7B A;  2HIK C;  3A1J B;  4ZTD A;  2HIK B;  1GE8 A;  3V60 B;  5B7O A;  1VYM A;  2ZVK A;  2Z0L A;  3VKX A;  3LX2 A;  5CFK A;  1B77 A;  3FDS C;  5IY4 A;  1T6L A;  1IZ5 A;  3HSL X;  3FDS D;  1U76 A;  2AWA A;  3I2M X;  4HK1 A;  5E0U A;  3GGR C;  1CZD A;  4YHR A;  2IO4 A;  2ZVW A;  3G65 B;  1SXJ F;  5AUJ A;  1RXM A;  1VYJ A;  1AXC A;  2OD8 A;  3GGR A;  2AVT A;  3U5Z F;  5E0V A;  3GPN A;  3A1J C;  2ZVV A;  2HII B;  3A1J A;  5JNE D;  1W60 A;  2HIK A;  2NTI B;  4D2G A;  3AIX B;  4RJF A;  5H0T A;  3U60 F;  4L60 A;  3G65 C;  3V61 B;  3G65 A;  1IZ4 A;  3P87 A;  2IJX A;  3AIZ C; 
#chains in the Genus database with same CATH homology
 5IWD A;  2NTI C;  3AIZ A;  5IXA A;  2IX2 B;  2ZVM A;  2NTI A;  5DAI A;  1YYP A;  1RXZ A;  4CS5 A;  5E0T A;  1B8H A;  3A2F B;  2ZVL A;  2IZO B;  1DML A;  1PLR A;  4TR6 A;  3F1W A;  5DA7 A;  3WGW A;  2IX2 C;  3P83 A;  5A6D A;  2HII A;  3GPM A;  3K4X A;  1PLQ A;  1RWZ A;  3LX1 A;  2IO4 B;  1UL1 A;  3U61 F;  2IX2 A;  2HII C;  5HAC A;  3HI8 A;  3AIX A;  3TBL A;  1ISQ A;  3GGR B;  2IZO C;  4L6P A;  3IFV A;  3V62 B;  1UD9 A;  3P91 A;  1U7B A;  2HIK C;  3A1J B;  4ZTD A;  2HIK B;  1GE8 A;  3V60 B;  5B7O A;  1VYM A;  2ZVK A;  2Z0L A;  3VKX A;  3LX2 A;  5CFK A;  1B77 A;  3FDS C;  5IY4 A;  1T6L A;  1IZ5 A;  3HSL X;  3FDS D;  1U76 A;  2AWA A;  3I2M X;  4HK1 A;  5E0U A;  3GGR C;  1CZD A;  4YHR A;  2IO4 A;  2ZVW A;  3G65 B;  1SXJ F;  5AUJ A;  1RXM A;  1VYJ A;  1AXC A;  2OD8 A;  3GGR A;  2AVT A;  3U5Z F;  5E0V A;  3GPN A;  3A1J C;  2ZVV A;  2HII B;  3A1J A;  5JNE D;  1W60 A;  2HIK A;  2NTI B;  4D2G A;  3AIX B;  4RJF A;  5H0T A;  3U60 F;  4L60 A;  3G65 C;  3V61 B;  3G65 A;  1IZ4 A;  3P87 A;  2IJX A;  3AIZ C;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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