3V62 | Genus

Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	255
structure length	255
Chain Sequence	MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLGIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKFN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding/dna binding protein
source organism	Saccharomyces cerevisiae
publication title	Recognition of SUMO-modified PCNA requires tandem receptor motifs in Srs2. pubmed doi rcsb
molecule keywords	Ubiquitin-like protein SMT3
total genus	58
structure length	255
sequence length	255
chains with identical sequence	E
ec nomenclature
pdb deposition date	2011-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
B	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	3v62B00

3GGRB 3A1JA 1RWZA 2NTIB 3HSLX 2IO4A 3G65A 4RJFA 4L6PA 2HIKB 2HIKC 3IFVA 4D2GA 1B8HA 3AIZC 3GGRA 2NTIA 4TR6A 2AWAA 5IWDA 3K4XA 3A2FB 2HIKA 1VYMA 3U5ZF 3FDSC 3A1JC 3HI8A 3V61B 5DAIA 1IZ5A 3AIZA 3GPMA 3U60F 1DMLA 3TBLA 2HIIB 3V60B 1PLQA 1CZDA 3GGRC 3P83A 1PLRA 2NTIC 1T6LA 3V62B 2OD8A 5E0VA 5IY4A 1UL1A 2HIIA 1RXMA 4HK1A 4YHRA 5DA7A 1AXCA 5IXAA 1U76A 2IZOB 2IZOC 2ZVVA 1B77A 2HIIC 4L60A 1RXZA 4CS5A 2Z0LA 2IX2B 3VKXA 2ZVWA 5HACA 5E0UA 2AVTA 3P91A 5H0TA 1GE8A 3U61F 1YYPA 5B7OA 3I2MX 3P87A 1U7BA 3WGWA 3AIXB 2ZVKA 1W60A 5CFKA 5AUJA 3GPNA 2ZVLA 2IX2C 3LX2A 5JNED 1VYJA 1ISQA 3AIXA 2IJXA 3F1WA 1IZ4A 1SXJF 2ZVMA 3A1JB 3FDSD 5E0TA 4ZTDA 2IO4B 3G65B 2IX2A 3G65C 3LX1A 5A6DA 1UD9A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3GGR B;  3A1J A;  1RWZ A;  2NTI B;  3HSL X;  2IO4 A;  3G65 A;  4RJF A;  4L6P A;  2HIK B;  2HIK C;  3IFV A;  4D2G A;  1B8H A;  3AIZ C;  3GGR A;  2NTI A;  4TR6 A;  2AWA A;  5IWD A;  3K4X A;  3A2F B;  2HIK A;  1VYM A;  3U5Z F;  3FDS C;  3A1J C;  3HI8 A;  3V61 B;  5DAI A;  1IZ5 A;  3AIZ A;  3GPM A;  3U60 F;  1DML A;  3TBL A;  2HII B;  3V60 B;  1PLQ A;  1CZD A;  3GGR C;  3P83 A;  1PLR A;  2NTI C;  1T6L A;  3V62 B;  2OD8 A;  5E0V A;  5IY4 A;  1UL1 A;  2HII A;  1RXM A;  4HK1 A;  4YHR A;  5DA7 A;  1AXC A;  5IXA A;  1U76 A;  2IZO B;  2IZO C;  2ZVV A;  1B77 A;  2HII C;  4L60 A;  1RXZ A;  4CS5 A;  2Z0L A;  2IX2 B;  3VKX A;  2ZVW A;  5HAC A;  5E0U A;  2AVT A;  3P91 A;  5H0T A;  1GE8 A;  3U61 F;  1YYP A;  5B7O A;  3I2M X;  3P87 A;  1U7B A;  3WGW A;  3AIX B;  2ZVK A;  1W60 A;  5CFK A;  5AUJ A;  3GPN A;  2ZVL A;  2IX2 C;  3LX2 A;  5JNE D;  1VYJ A;  1ISQ A;  3AIX A;  2IJX A;  3F1W A;  1IZ4 A;  1SXJ F;  2ZVM A;  3A1J B;  3FDS D;  5E0T A;  4ZTD A;  2IO4 B;  3G65 B;  2IX2 A;  3G65 C;  3LX1 A;  5A6D A;  1UD9 A; 
#chains in the Genus database with same CATH topology
 3GGR B;  3A1J A;  1RWZ A;  2NTI B;  3HSL X;  2IO4 A;  3G65 A;  4RJF A;  4L6P A;  2HIK B;  2HIK C;  3IFV A;  4D2G A;  1B8H A;  3AIZ C;  3GGR A;  2NTI A;  4TR6 A;  2AWA A;  5IWD A;  3K4X A;  3A2F B;  2HIK A;  1VYM A;  3U5Z F;  3FDS C;  3A1J C;  3HI8 A;  3V61 B;  5DAI A;  1IZ5 A;  3AIZ A;  3GPM A;  3U60 F;  1DML A;  3TBL A;  2HII B;  3V60 B;  1PLQ A;  1CZD A;  3GGR C;  3P83 A;  1PLR A;  2NTI C;  1T6L A;  3V62 B;  2OD8 A;  5E0V A;  5IY4 A;  1UL1 A;  2HII A;  1RXM A;  4HK1 A;  4YHR A;  5DA7 A;  1AXC A;  5IXA A;  1U76 A;  2IZO B;  2IZO C;  2ZVV A;  1B77 A;  2HII C;  4L60 A;  1RXZ A;  4CS5 A;  2Z0L A;  2IX2 B;  3VKX A;  2ZVW A;  5HAC A;  5E0U A;  2AVT A;  3P91 A;  5H0T A;  1GE8 A;  3U61 F;  1YYP A;  5B7O A;  3I2M X;  3P87 A;  1U7B A;  3WGW A;  3AIX B;  2ZVK A;  1W60 A;  5CFK A;  5AUJ A;  3GPN A;  2ZVL A;  2IX2 C;  3LX2 A;  5JNE D;  1VYJ A;  1ISQ A;  3AIX A;  2IJX A;  3F1W A;  1IZ4 A;  1SXJ F;  2ZVM A;  3A1J B;  3FDS D;  5E0T A;  4ZTD A;  2IO4 B;  3G65 B;  2IX2 A;  3G65 C;  3LX1 A;  5A6D A;  1UD9 A; 
#chains in the Genus database with same CATH homology
 3GGR B;  3A1J A;  1RWZ A;  2NTI B;  3HSL X;  2IO4 A;  3G65 A;  4RJF A;  4L6P A;  2HIK B;  2HIK C;  3IFV A;  4D2G A;  1B8H A;  3AIZ C;  3GGR A;  2NTI A;  4TR6 A;  2AWA A;  5IWD A;  3K4X A;  3A2F B;  2HIK A;  1VYM A;  3U5Z F;  3FDS C;  3A1J C;  3HI8 A;  3V61 B;  5DAI A;  1IZ5 A;  3AIZ A;  3GPM A;  3U60 F;  1DML A;  3TBL A;  2HII B;  3V60 B;  1PLQ A;  1CZD A;  3GGR C;  3P83 A;  1PLR A;  2NTI C;  1T6L A;  3V62 B;  2OD8 A;  5E0V A;  5IY4 A;  1UL1 A;  2HII A;  1RXM A;  4HK1 A;  4YHR A;  5DA7 A;  1AXC A;  5IXA A;  1U76 A;  2IZO B;  2IZO C;  2ZVV A;  1B77 A;  2HII C;  4L60 A;  1RXZ A;  4CS5 A;  2Z0L A;  2IX2 B;  3VKX A;  2ZVW A;  5HAC A;  5E0U A;  2AVT A;  3P91 A;  5H0T A;  1GE8 A;  3U61 F;  1YYP A;  5B7O A;  3I2M X;  3P87 A;  1U7B A;  3WGW A;  3AIX B;  2ZVK A;  1W60 A;  5CFK A;  5AUJ A;  3GPN A;  2ZVL A;  2IX2 C;  3LX2 A;  5JNE D;  1VYJ A;  1ISQ A;  3AIX A;  2IJX A;  3F1W A;  1IZ4 A;  1SXJ F;  2ZVM A;  3A1J B;  3FDS D;  5E0T A;  4ZTD A;  2IO4 B;  3G65 B;  2IX2 A;  3G65 C;  3LX1 A;  5A6D A;  1UD9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3V62B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations