3VKXA

Structure of pcna
Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
255
structure length
248
Chain Sequence
MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (93-96)S1 (2-6)TVIII2 (57-60)TIV1 (6-9)AH1 (9-18)TI5 (83-86)AH2 (72-81)TII2 (241-244)TI1 (19-22)TI2 (20-23)TI4 (41-44)TVIII1 (23-26)S2 (25-31)TI3 (31-34)S5 (59-61)S3 (34-40)S4 (46-53)3H1 (54-56)TVIII3 (62-65)S6 (66-71)S7 (87-92)S8 (98-104)TI6 (105-108)TVIII4 (108-111)TIV3 (133-136)S10 (135-140)AH3 (141-153)AH4 (209-215)3H2 (216-221)S15 (203-208)TVIII5 (199-202)S11 (157-163)TI7 (163-166)TIV4 (185-195)S14 (196-199)S18 (245-251)TII1 (230-233)S16 (224-230)S17 (233-241)S9 (111-117)S12 (166-173)S13 (176-183)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Homo sapiens
publication title Identification of small molecule proliferating cell nuclear antigen (PCNA) inhibitor that disrupts interactions with PIP-box proteins and inhibits DNA replication
pubmed doi rcsb
molecule keywords Proliferating cell nuclear antigen
total genus 58
structure length 248
sequence length 255
ec nomenclature
pdb deposition date 2011-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3vkxA00
2ZVWA 3P83A 4CS5A 2NTIA 2OD8A 3U61F 3HI8A 2ZVMA 1PLQA 5B7OA 1RXZA 2IJXA 3FDSD 2HIIC 1IZ4A 3K4XA 2ZVVA 3AIXB 4RJFA 3GPMA 5DAIA 4TR6A 1AXCA 1YYPA 1ISQA 1W60A 4L6PA 2IZOC 3FDSC 2AVTA 5IWDA 3G65C 1IZ5A 1VYMA 1B77A 2HIIB 3A1JA 3GPNA 3V62B 5H0TA 3WGWA 3I2MX 3U60F 3AIXA 2IX2B 5JNED 1DMLA 2HIKB 2IZOB 3AIZA 3V60B 3U5ZF 2IO4B 3G65B 1T6LA 3GGRC 3A2FB 2IX2C 2HIKC 3LX1A 3LX2A 5IXAA 5E0TA 4ZTDA 3P91A 2HIIA 2NTIB 1PLRA 5IY4A 1CZDA 3VKXA 3F1WA 5E0VA 2Z0LA 3GGRB 1GE8A 1RXMA 2NTIC 2IO4A 3IFVA 3G65A 5DA7A 1VYJA 1SXJF 4HK1A 4YHRA 3V61B 2ZVLA 1UD9A 1B8HA 1U7BA 3HSLX 2AWAA 2ZVKA 3A1JB 3P87A 5HACA 3GGRA 5A6DA 2IX2A 2HIKA 3A1JC 5AUJA 3TBLA 1RWZA 5CFKA 4L60A 3AIZC 1U76A 5E0UA 4D2GA 1UL1A
chains in the Genus database with same CATH superfamily
2ZVWA 3P83A 4CS5A 2NTIA 2OD8A 3U61F 3HI8A 2ZVMA 1PLQA 5B7OA 1RXZA 2IJXA 3FDSD 2HIIC 1IZ4A 3K4XA 2ZVVA 3AIXB 4RJFA 3GPMA 5DAIA 4TR6A 1AXCA 1YYPA 1ISQA 1W60A 4L6PA 2IZOC 3FDSC 2AVTA 5IWDA 3G65C 1IZ5A 1VYMA 1B77A 2HIIB 3A1JA 3GPNA 3V62B 5H0TA 3WGWA 3I2MX 3U60F 3AIXA 2IX2B 5JNED 1DMLA 2HIKB 2IZOB 3AIZA 3V60B 3U5ZF 2IO4B 3G65B 1T6LA 3GGRC 3A2FB 2IX2C 2HIKC 3LX1A 3LX2A 5IXAA 5E0TA 4ZTDA 3P91A 2HIIA 2NTIB 1PLRA 5IY4A 1CZDA 3VKXA 3F1WA 5E0VA 2Z0LA 3GGRB 1GE8A 1RXMA 2NTIC 2IO4A 3IFVA 3G65A 5DA7A 1VYJA 1SXJF 4HK1A 4YHRA 3V61B 2ZVLA 1UD9A 1B8HA 1U7BA 3HSLX 2AWAA 2ZVKA 3A1JB 3P87A 5HACA 3GGRA 5A6DA 2IX2A 2HIKA 3A1JC 5AUJA 3TBLA 1RWZA 5CFKA 4L60A 3AIZC 1U76A 5E0UA 4D2GA 1UL1A
chains in the Genus database with same CATH topology
2ZVWA 3P83A 4CS5A 2NTIA 2OD8A 3U61F 3HI8A 2ZVMA 1PLQA 5B7OA 1RXZA 2IJXA 3FDSD 2HIIC 1IZ4A 3K4XA 2ZVVA 3AIXB 4RJFA 3GPMA 5DAIA 4TR6A 1AXCA 1YYPA 1ISQA 1W60A 4L6PA 2IZOC 3FDSC 2AVTA 5IWDA 3G65C 1IZ5A 1VYMA 1B77A 2HIIB 3A1JA 3GPNA 3V62B 5H0TA 3WGWA 3I2MX 3U60F 3AIXA 2IX2B 5JNED 1DMLA 2HIKB 2IZOB 3AIZA 3V60B 3U5ZF 2IO4B 3G65B 1T6LA 3GGRC 3A2FB 2IX2C 2HIKC 3LX1A 3LX2A 5IXAA 5E0TA 4ZTDA 3P91A 2HIIA 2NTIB 1PLRA 5IY4A 1CZDA 3VKXA 3F1WA 5E0VA 2Z0LA 3GGRB 1GE8A 1RXMA 2NTIC 2IO4A 3IFVA 3G65A 5DA7A 1VYJA 1SXJF 4HK1A 4YHRA 3V61B 2ZVLA 1UD9A 1B8HA 1U7BA 3HSLX 2AWAA 2ZVKA 3A1JB 3P87A 5HACA 3GGRA 5A6DA 2IX2A 2HIKA 3A1JC 5AUJA 3TBLA 1RWZA 5CFKA 4L60A 3AIZC 1U76A 5E0UA 4D2GA 1UL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZVW A;  3P83 A;  4CS5 A;  2NTI A;  2OD8 A;  3U61 F;  3HI8 A;  2ZVM A;  1PLQ A;  5B7O A;  1RXZ A;  2IJX A;  3FDS D;  2HII C;  1IZ4 A;  3K4X A;  2ZVV A;  3AIX B;  4RJF A;  3GPM A;  5DAI A;  4TR6 A;  1AXC A;  1YYP A;  1ISQ A;  1W60 A;  4L6P A;  2IZO C;  3FDS C;  2AVT A;  5IWD A;  3G65 C;  1IZ5 A;  1VYM A;  1B77 A;  2HII B;  3A1J A;  3GPN A;  3V62 B;  5H0T A;  3WGW A;  3I2M X;  3U60 F;  3AIX A;  2IX2 B;  5JNE D;  1DML A;  2HIK B;  2IZO B;  3AIZ A;  3V60 B;  3U5Z F;  2IO4 B;  3G65 B;  1T6L A;  3GGR C;  3A2F B;  2IX2 C;  2HIK C;  3LX1 A;  3LX2 A;  5IXA A;  5E0T A;  4ZTD A;  3P91 A;  2HII A;  2NTI B;  1PLR A;  5IY4 A;  1CZD A;  3VKX A;  3F1W A;  5E0V A;  2Z0L A;  3GGR B;  1GE8 A;  1RXM A;  2NTI C;  2IO4 A;  3IFV A;  3G65 A;  5DA7 A;  1VYJ A;  1SXJ F;  4HK1 A;  4YHR A;  3V61 B;  2ZVL A;  1UD9 A;  1B8H A;  1U7B A;  3HSL X;  2AWA A;  2ZVK A;  3A1J B;  3P87 A;  5HAC A;  3GGR A;  5A6D A;  2IX2 A;  2HIK A;  3A1J C;  5AUJ A;  3TBL A;  1RWZ A;  5CFK A;  4L60 A;  3AIZ C;  1U76 A;  5E0U A;  4D2G A;  1UL1 A; 
#chains in the Genus database with same CATH topology
 2ZVW A;  3P83 A;  4CS5 A;  2NTI A;  2OD8 A;  3U61 F;  3HI8 A;  2ZVM A;  1PLQ A;  5B7O A;  1RXZ A;  2IJX A;  3FDS D;  2HII C;  1IZ4 A;  3K4X A;  2ZVV A;  3AIX B;  4RJF A;  3GPM A;  5DAI A;  4TR6 A;  1AXC A;  1YYP A;  1ISQ A;  1W60 A;  4L6P A;  2IZO C;  3FDS C;  2AVT A;  5IWD A;  3G65 C;  1IZ5 A;  1VYM A;  1B77 A;  2HII B;  3A1J A;  3GPN A;  3V62 B;  5H0T A;  3WGW A;  3I2M X;  3U60 F;  3AIX A;  2IX2 B;  5JNE D;  1DML A;  2HIK B;  2IZO B;  3AIZ A;  3V60 B;  3U5Z F;  2IO4 B;  3G65 B;  1T6L A;  3GGR C;  3A2F B;  2IX2 C;  2HIK C;  3LX1 A;  3LX2 A;  5IXA A;  5E0T A;  4ZTD A;  3P91 A;  2HII A;  2NTI B;  1PLR A;  5IY4 A;  1CZD A;  3VKX A;  3F1W A;  5E0V A;  2Z0L A;  3GGR B;  1GE8 A;  1RXM A;  2NTI C;  2IO4 A;  3IFV A;  3G65 A;  5DA7 A;  1VYJ A;  1SXJ F;  4HK1 A;  4YHR A;  3V61 B;  2ZVL A;  1UD9 A;  1B8H A;  1U7B A;  3HSL X;  2AWA A;  2ZVK A;  3A1J B;  3P87 A;  5HAC A;  3GGR A;  5A6D A;  2IX2 A;  2HIK A;  3A1J C;  5AUJ A;  3TBL A;  1RWZ A;  5CFK A;  4L60 A;  3AIZ C;  1U76 A;  5E0U A;  4D2G A;  1UL1 A; 
#chains in the Genus database with same CATH homology
 2ZVW A;  3P83 A;  4CS5 A;  2NTI A;  2OD8 A;  3U61 F;  3HI8 A;  2ZVM A;  1PLQ A;  5B7O A;  1RXZ A;  2IJX A;  3FDS D;  2HII C;  1IZ4 A;  3K4X A;  2ZVV A;  3AIX B;  4RJF A;  3GPM A;  5DAI A;  4TR6 A;  1AXC A;  1YYP A;  1ISQ A;  1W60 A;  4L6P A;  2IZO C;  3FDS C;  2AVT A;  5IWD A;  3G65 C;  1IZ5 A;  1VYM A;  1B77 A;  2HII B;  3A1J A;  3GPN A;  3V62 B;  5H0T A;  3WGW A;  3I2M X;  3U60 F;  3AIX A;  2IX2 B;  5JNE D;  1DML A;  2HIK B;  2IZO B;  3AIZ A;  3V60 B;  3U5Z F;  2IO4 B;  3G65 B;  1T6L A;  3GGR C;  3A2F B;  2IX2 C;  2HIK C;  3LX1 A;  3LX2 A;  5IXA A;  5E0T A;  4ZTD A;  3P91 A;  2HII A;  2NTI B;  1PLR A;  5IY4 A;  1CZD A;  3VKX A;  3F1W A;  5E0V A;  2Z0L A;  3GGR B;  1GE8 A;  1RXM A;  2NTI C;  2IO4 A;  3IFV A;  3G65 A;  5DA7 A;  1VYJ A;  1SXJ F;  4HK1 A;  4YHR A;  3V61 B;  2ZVL A;  1UD9 A;  1B8H A;  1U7B A;  3HSL X;  2AWA A;  2ZVK A;  3A1J B;  3P87 A;  5HAC A;  3GGR A;  5A6D A;  2IX2 A;  2HIK A;  3A1J C;  5AUJ A;  3TBL A;  1RWZ A;  5CFK A;  4L60 A;  3AIZ C;  1U76 A;  5E0U A;  4D2G A;  1UL1 A; 
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