3G65A

Crystal structure of the human rad9-rad1-hus1 dna damage checkpoint complex
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
273
structure length
254
Chain Sequence
MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQALRCKILMKSFLSVFRSLAMVEKCCISLNGRLVVQLHCKFGVRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHETAKAMVTEMCLGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGHFVLATLSDTDSGTT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-6)TI3 (86-89)AH1 (8-22)AH2 (77-83)TIV7 (204-207)S2 (26-32)TIV6 (114-117)S3 (35-41)EMPTYTI2 (42-45)S4 (47-53)TIV8 (242-245)S6 (96-101)S7 (108-113)TIV4 (101-107)S9 (143-148)AH3 (149-157)TI4 (160-163)S11 (175-180)S10 (165-171)TII1 (171-174)S12 (196-199)3H2 (201-203)S13 (206-208)AH4 (219-232)S14 (213-218)S15 (235-240)TIV3 (84-87)S5 (73-76)S8 (119-124)TII2 (210-213)O2 (189-191)3H1 (138-140)Updating...
connected with : NaN
molecule tags Cell cycle
source organism Homo sapiens
publication title Crystal structure of the rad9-rad1-hus1 DNA damage checkpoint complex--implications for clamp loading and regulation.
pubmed doi rcsb
molecule keywords Cell cycle checkpoint control protein RAD9A
total genus 48
structure length 254
sequence length 273
ec nomenclature ec 3.1.11.2: Exodeoxyribonuclease III.
pdb deposition date 2009-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04139 Rad9 Rad9
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3g65A00
5A6DA 3F1WA 1PLRA 5E0VA 3V61B 3G65A 3AIXB 3V60B 3AIZC 2HIIB 2HIIC 3U61F 2OD8A 1RXZA 2IZOC 5HACA 3GGRC 5AUJA 4L60A 5B7OA 2IX2B 5IWDA 3WGWA 5E0TA 4CS5A 1UD9A 3P83A 1UL1A 3HSLX 3A1JB 3A1JC 1SXJF 2ZVWA 1YYPA 1DMLA 4ZTDA 1RXMA 1W60A 1GE8A 4YHRA 3LX2A 3G65B 2ZVMA 3U60F 1ISQA 4D2GA 2ZVLA 5IXAA 5DAIA 2IX2C 5DA7A 1U76A 2AVTA 2AWAA 2IO4A 3LX1A 1RWZA 2ZVKA 3A2FB 4TR6A 1B8HA 3VKXA 3GGRA 2IJXA 3FDSD 3U5ZF 2NTIB 5E0UA 2NTIC 3K4XA 3P91A 2HIKA 3G65C 4HK1A 3V62B 3FDSC 1IZ4A 3GPMA 1B77A 1CZDA 3TBLA 1U7BA 1VYJA 3AIXA 3AIZA 2HIIA 5JNED 2ZVVA 1IZ5A 2IO4B 1VYMA 4RJFA 5H0TA 3IFVA 2IX2A 2IZOB 3GGRB 3I2MX 3GPNA 3HI8A 1PLQA 3A1JA 2HIKB 5CFKA 2HIKC 5IY4A 2NTIA 3P87A 2Z0LA 1AXCA 1T6LA 4L6PA
chains in the Genus database with same CATH superfamily
5A6DA 3F1WA 1PLRA 5E0VA 3V61B 3G65A 3AIXB 3V60B 3AIZC 2HIIB 2HIIC 3U61F 2OD8A 1RXZA 2IZOC 5HACA 3GGRC 5AUJA 4L60A 5B7OA 2IX2B 5IWDA 3WGWA 5E0TA 4CS5A 1UD9A 3P83A 1UL1A 3HSLX 3A1JB 3A1JC 1SXJF 2ZVWA 1YYPA 1DMLA 4ZTDA 1RXMA 1W60A 1GE8A 4YHRA 3LX2A 3G65B 2ZVMA 3U60F 1ISQA 4D2GA 2ZVLA 5IXAA 5DAIA 2IX2C 5DA7A 1U76A 2AVTA 2AWAA 2IO4A 3LX1A 1RWZA 2ZVKA 3A2FB 4TR6A 1B8HA 3VKXA 3GGRA 2IJXA 3FDSD 3U5ZF 2NTIB 5E0UA 2NTIC 3K4XA 3P91A 2HIKA 3G65C 4HK1A 3V62B 3FDSC 1IZ4A 3GPMA 1B77A 1CZDA 3TBLA 1U7BA 1VYJA 3AIXA 3AIZA 2HIIA 5JNED 2ZVVA 1IZ5A 2IO4B 1VYMA 4RJFA 5H0TA 3IFVA 2IX2A 2IZOB 3GGRB 3I2MX 3GPNA 3HI8A 1PLQA 3A1JA 2HIKB 5CFKA 2HIKC 5IY4A 2NTIA 3P87A 2Z0LA 1AXCA 1T6LA 4L6PA
chains in the Genus database with same CATH topology
5A6DA 3F1WA 1PLRA 5E0VA 3V61B 3G65A 3AIXB 3V60B 3AIZC 2HIIB 2HIIC 3U61F 2OD8A 1RXZA 2IZOC 5HACA 3GGRC 5AUJA 4L60A 5B7OA 2IX2B 5IWDA 3WGWA 5E0TA 4CS5A 1UD9A 3P83A 1UL1A 3HSLX 3A1JB 3A1JC 1SXJF 2ZVWA 1YYPA 1DMLA 4ZTDA 1RXMA 1W60A 1GE8A 4YHRA 3LX2A 3G65B 2ZVMA 3U60F 1ISQA 4D2GA 2ZVLA 5IXAA 5DAIA 2IX2C 5DA7A 1U76A 2AVTA 2AWAA 2IO4A 3LX1A 1RWZA 2ZVKA 3A2FB 4TR6A 1B8HA 3VKXA 3GGRA 2IJXA 3FDSD 3U5ZF 2NTIB 5E0UA 2NTIC 3K4XA 3P91A 2HIKA 3G65C 4HK1A 3V62B 3FDSC 1IZ4A 3GPMA 1B77A 1CZDA 3TBLA 1U7BA 1VYJA 3AIXA 3AIZA 2HIIA 5JNED 2ZVVA 1IZ5A 2IO4B 1VYMA 4RJFA 5H0TA 3IFVA 2IX2A 2IZOB 3GGRB 3I2MX 3GPNA 3HI8A 1PLQA 3A1JA 2HIKB 5CFKA 2HIKC 5IY4A 2NTIA 3P87A 2Z0LA 1AXCA 1T6LA 4L6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A6D A;  3F1W A;  1PLR A;  5E0V A;  3V61 B;  3G65 A;  3AIX B;  3V60 B;  3AIZ C;  2HII B;  2HII C;  3U61 F;  2OD8 A;  1RXZ A;  2IZO C;  5HAC A;  3GGR C;  5AUJ A;  4L60 A;  5B7O A;  2IX2 B;  5IWD A;  3WGW A;  5E0T A;  4CS5 A;  1UD9 A;  3P83 A;  1UL1 A;  3HSL X;  3A1J B;  3A1J C;  1SXJ F;  2ZVW A;  1YYP A;  1DML A;  4ZTD A;  1RXM A;  1W60 A;  1GE8 A;  4YHR A;  3LX2 A;  3G65 B;  2ZVM A;  3U60 F;  1ISQ A;  4D2G A;  2ZVL A;  5IXA A;  5DAI A;  2IX2 C;  5DA7 A;  1U76 A;  2AVT A;  2AWA A;  2IO4 A;  3LX1 A;  1RWZ A;  2ZVK A;  3A2F B;  4TR6 A;  1B8H A;  3VKX A;  3GGR A;  2IJX A;  3FDS D;  3U5Z F;  2NTI B;  5E0U A;  2NTI C;  3K4X A;  3P91 A;  2HIK A;  3G65 C;  4HK1 A;  3V62 B;  3FDS C;  1IZ4 A;  3GPM A;  1B77 A;  1CZD A;  3TBL A;  1U7B A;  1VYJ A;  3AIX A;  3AIZ A;  2HII A;  5JNE D;  2ZVV A;  1IZ5 A;  2IO4 B;  1VYM A;  4RJF A;  5H0T A;  3IFV A;  2IX2 A;  2IZO B;  3GGR B;  3I2M X;  3GPN A;  3HI8 A;  1PLQ A;  3A1J A;  2HIK B;  5CFK A;  2HIK C;  5IY4 A;  2NTI A;  3P87 A;  2Z0L A;  1AXC A;  1T6L A;  4L6P A; 
#chains in the Genus database with same CATH topology
 5A6D A;  3F1W A;  1PLR A;  5E0V A;  3V61 B;  3G65 A;  3AIX B;  3V60 B;  3AIZ C;  2HII B;  2HII C;  3U61 F;  2OD8 A;  1RXZ A;  2IZO C;  5HAC A;  3GGR C;  5AUJ A;  4L60 A;  5B7O A;  2IX2 B;  5IWD A;  3WGW A;  5E0T A;  4CS5 A;  1UD9 A;  3P83 A;  1UL1 A;  3HSL X;  3A1J B;  3A1J C;  1SXJ F;  2ZVW A;  1YYP A;  1DML A;  4ZTD A;  1RXM A;  1W60 A;  1GE8 A;  4YHR A;  3LX2 A;  3G65 B;  2ZVM A;  3U60 F;  1ISQ A;  4D2G A;  2ZVL A;  5IXA A;  5DAI A;  2IX2 C;  5DA7 A;  1U76 A;  2AVT A;  2AWA A;  2IO4 A;  3LX1 A;  1RWZ A;  2ZVK A;  3A2F B;  4TR6 A;  1B8H A;  3VKX A;  3GGR A;  2IJX A;  3FDS D;  3U5Z F;  2NTI B;  5E0U A;  2NTI C;  3K4X A;  3P91 A;  2HIK A;  3G65 C;  4HK1 A;  3V62 B;  3FDS C;  1IZ4 A;  3GPM A;  1B77 A;  1CZD A;  3TBL A;  1U7B A;  1VYJ A;  3AIX A;  3AIZ A;  2HII A;  5JNE D;  2ZVV A;  1IZ5 A;  2IO4 B;  1VYM A;  4RJF A;  5H0T A;  3IFV A;  2IX2 A;  2IZO B;  3GGR B;  3I2M X;  3GPN A;  3HI8 A;  1PLQ A;  3A1J A;  2HIK B;  5CFK A;  2HIK C;  5IY4 A;  2NTI A;  3P87 A;  2Z0L A;  1AXC A;  1T6L A;  4L6P A; 
#chains in the Genus database with same CATH homology
 5A6D A;  3F1W A;  1PLR A;  5E0V A;  3V61 B;  3G65 A;  3AIX B;  3V60 B;  3AIZ C;  2HII B;  2HII C;  3U61 F;  2OD8 A;  1RXZ A;  2IZO C;  5HAC A;  3GGR C;  5AUJ A;  4L60 A;  5B7O A;  2IX2 B;  5IWD A;  3WGW A;  5E0T A;  4CS5 A;  1UD9 A;  3P83 A;  1UL1 A;  3HSL X;  3A1J B;  3A1J C;  1SXJ F;  2ZVW A;  1YYP A;  1DML A;  4ZTD A;  1RXM A;  1W60 A;  1GE8 A;  4YHR A;  3LX2 A;  3G65 B;  2ZVM A;  3U60 F;  1ISQ A;  4D2G A;  2ZVL A;  5IXA A;  5DAI A;  2IX2 C;  5DA7 A;  1U76 A;  2AVT A;  2AWA A;  2IO4 A;  3LX1 A;  1RWZ A;  2ZVK A;  3A2F B;  4TR6 A;  1B8H A;  3VKX A;  3GGR A;  2IJX A;  3FDS D;  3U5Z F;  2NTI B;  5E0U A;  2NTI C;  3K4X A;  3P91 A;  2HIK A;  3G65 C;  4HK1 A;  3V62 B;  3FDS C;  1IZ4 A;  3GPM A;  1B77 A;  1CZD A;  3TBL A;  1U7B A;  1VYJ A;  3AIX A;  3AIZ A;  2HII A;  5JNE D;  2ZVV A;  1IZ5 A;  2IO4 B;  1VYM A;  4RJF A;  5H0T A;  3IFV A;  2IX2 A;  2IZO B;  3GGR B;  3I2M X;  3GPN A;  3HI8 A;  1PLQ A;  3A1J A;  2HIK B;  5CFK A;  2HIK C;  5IY4 A;  2NTI A;  3P87 A;  2Z0L A;  1AXC A;  1T6L A;  4L6P A; 
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