3GGRB

Crystal structure of the human rad9-hus1-rad1 complex
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
278
structure length
278
Chain Sequence
FRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Cell cycle checkpoint control protein RAD9A
publication title Structure and functional implications of the human rad9-hus1-rad1 cell cycle checkpoint complex
pubmed doi rcsb
source organism Homo sapiens
total genus 34
structure length 278
sequence length 278
ec nomenclature
pdb deposition date 2009-03-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3ggrB00
3A2FB 1DMLA 5HACA 3P87A 5H0TA 3A1JA 1YYPA 3V61B 5AUJA 1PLQA 5DAIA 5B7OA 2AVTA 1B77A 2HIIA 1UL1A 4CS5A 5IXAA 3GGRC 3GGRB 3K4XA 2HIKC 3AIXB 2ZVKA 5E0VA 3G65A 5JNED 3LX1A 3HSLX 1IZ4A 3VKXA 3GPMA 3WGWA 3V60B 4TR6A 3I2MX 4YHRA 2ZVLA 1VYJA 5IY4A 2ZVVA 3U61F 4RJFA 3LX2A 2IO4B 3V62B 3P91A 1CZDA 2OD8A 5E0UA 1RXMA 5DA7A 3GGRA 1AXCA 1PLRA 1B8HA 2HIIB 2Z0LA 1RWZA 2HIKA 3HI8A 2IX2A 1GE8A 2IZOC 2IZOB 4L60A 3F1WA 5CFKA 1UD9A 1U76A 3AIZC 1W60A 2NTIC 2NTIB 3IFVA 1VYMA 5IWDA 3G65B 3P83A 1SXJF 3FDSC 3GPNA 5E0TA 2IJXA 1ISQA 3A1JC 3A1JB 1IZ5A 3U60F 2IO4A 2ZVWA 2HIIC 3AIXA 1RXZA 4HK1A 3U5ZF 2AWAA 4ZTDA 2ZVMA 3TBLA 5A6DA 1T6LA 3G65C 4L6PA 1U7BA 3AIZA 3FDSD 2NTIA 2HIKB 2IX2C 2IX2B 4D2GA
chains in the Genus database with same CATH superfamily
3A2FB 1DMLA 5HACA 3P87A 5H0TA 3A1JA 1YYPA 3V61B 5AUJA 1PLQA 5DAIA 5B7OA 2AVTA 1B77A 2HIIA 1UL1A 4CS5A 5IXAA 3GGRC 3GGRB 3K4XA 2HIKC 3AIXB 2ZVKA 5E0VA 3G65A 5JNED 3LX1A 3HSLX 1IZ4A 3VKXA 3GPMA 3WGWA 3V60B 4TR6A 3I2MX 4YHRA 2ZVLA 1VYJA 5IY4A 2ZVVA 3U61F 4RJFA 3LX2A 2IO4B 3V62B 3P91A 1CZDA 2OD8A 5E0UA 1RXMA 5DA7A 3GGRA 1AXCA 1PLRA 1B8HA 2HIIB 2Z0LA 1RWZA 2HIKA 3HI8A 2IX2A 1GE8A 2IZOC 2IZOB 4L60A 3F1WA 5CFKA 1UD9A 1U76A 3AIZC 1W60A 2NTIC 2NTIB 3IFVA 1VYMA 5IWDA 3G65B 3P83A 1SXJF 3FDSC 3GPNA 5E0TA 2IJXA 1ISQA 3A1JC 3A1JB 1IZ5A 3U60F 2IO4A 2ZVWA 2HIIC 3AIXA 1RXZA 4HK1A 3U5ZF 2AWAA 4ZTDA 2ZVMA 3TBLA 5A6DA 1T6LA 3G65C 4L6PA 1U7BA 3AIZA 3FDSD 2NTIA 2HIKB 2IX2C 2IX2B 4D2GA
chains in the Genus database with same CATH topology
3A2FB 1DMLA 5HACA 3P87A 5H0TA 3A1JA 1YYPA 3V61B 5AUJA 1PLQA 5DAIA 5B7OA 2AVTA 1B77A 2HIIA 1UL1A 4CS5A 5IXAA 3GGRC 3GGRB 3K4XA 2HIKC 3AIXB 2ZVKA 5E0VA 3G65A 5JNED 3LX1A 3HSLX 1IZ4A 3VKXA 3GPMA 3WGWA 3V60B 4TR6A 3I2MX 4YHRA 2ZVLA 1VYJA 5IY4A 2ZVVA 3U61F 4RJFA 3LX2A 2IO4B 3V62B 3P91A 1CZDA 2OD8A 5E0UA 1RXMA 5DA7A 3GGRA 1AXCA 1PLRA 1B8HA 2HIIB 2Z0LA 1RWZA 2HIKA 3HI8A 2IX2A 1GE8A 2IZOC 2IZOB 4L60A 3F1WA 5CFKA 1UD9A 1U76A 3AIZC 1W60A 2NTIC 2NTIB 3IFVA 1VYMA 5IWDA 3G65B 3P83A 1SXJF 3FDSC 3GPNA 5E0TA 2IJXA 1ISQA 3A1JC 3A1JB 1IZ5A 3U60F 2IO4A 2ZVWA 2HIIC 3AIXA 1RXZA 4HK1A 3U5ZF 2AWAA 4ZTDA 2ZVMA 3TBLA 5A6DA 1T6LA 3G65C 4L6PA 1U7BA 3AIZA 3FDSD 2NTIA 2HIKB 2IX2C 2IX2B 4D2GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A2F B;  1DML A;  5HAC A;  3P87 A;  5H0T A;  3A1J A;  1YYP A;  3V61 B;  5AUJ A;  1PLQ A;  5DAI A;  5B7O A;  2AVT A;  1B77 A;  2HII A;  1UL1 A;  4CS5 A;  5IXA A;  3GGR C;  3GGR B;  3K4X A;  2HIK C;  3AIX B;  2ZVK A;  5E0V A;  3G65 A;  5JNE D;  3LX1 A;  3HSL X;  1IZ4 A;  3VKX A;  3GPM A;  3WGW A;  3V60 B;  4TR6 A;  3I2M X;  4YHR A;  2ZVL A;  1VYJ A;  5IY4 A;  2ZVV A;  3U61 F;  4RJF A;  3LX2 A;  2IO4 B;  3V62 B;  3P91 A;  1CZD A;  2OD8 A;  5E0U A;  1RXM A;  5DA7 A;  3GGR A;  1AXC A;  1PLR A;  1B8H A;  2HII B;  2Z0L A;  1RWZ A;  2HIK A;  3HI8 A;  2IX2 A;  1GE8 A;  2IZO C;  2IZO B;  4L60 A;  3F1W A;  5CFK A;  1UD9 A;  1U76 A;  3AIZ C;  1W60 A;  2NTI C;  2NTI B;  3IFV A;  1VYM A;  5IWD A;  3G65 B;  3P83 A;  1SXJ F;  3FDS C;  3GPN A;  5E0T A;  2IJX A;  1ISQ A;  3A1J C;  3A1J B;  1IZ5 A;  3U60 F;  2IO4 A;  2ZVW A;  2HII C;  3AIX A;  1RXZ A;  4HK1 A;  3U5Z F;  2AWA A;  4ZTD A;  2ZVM A;  3TBL A;  5A6D A;  1T6L A;  3G65 C;  4L6P A;  1U7B A;  3AIZ A;  3FDS D;  2NTI A;  2HIK B;  2IX2 C;  2IX2 B;  4D2G A; 
#chains in the Genus database with same CATH topology
 3A2F B;  1DML A;  5HAC A;  3P87 A;  5H0T A;  3A1J A;  1YYP A;  3V61 B;  5AUJ A;  1PLQ A;  5DAI A;  5B7O A;  2AVT A;  1B77 A;  2HII A;  1UL1 A;  4CS5 A;  5IXA A;  3GGR C;  3GGR B;  3K4X A;  2HIK C;  3AIX B;  2ZVK A;  5E0V A;  3G65 A;  5JNE D;  3LX1 A;  3HSL X;  1IZ4 A;  3VKX A;  3GPM A;  3WGW A;  3V60 B;  4TR6 A;  3I2M X;  4YHR A;  2ZVL A;  1VYJ A;  5IY4 A;  2ZVV A;  3U61 F;  4RJF A;  3LX2 A;  2IO4 B;  3V62 B;  3P91 A;  1CZD A;  2OD8 A;  5E0U A;  1RXM A;  5DA7 A;  3GGR A;  1AXC A;  1PLR A;  1B8H A;  2HII B;  2Z0L A;  1RWZ A;  2HIK A;  3HI8 A;  2IX2 A;  1GE8 A;  2IZO C;  2IZO B;  4L60 A;  3F1W A;  5CFK A;  1UD9 A;  1U76 A;  3AIZ C;  1W60 A;  2NTI C;  2NTI B;  3IFV A;  1VYM A;  5IWD A;  3G65 B;  3P83 A;  1SXJ F;  3FDS C;  3GPN A;  5E0T A;  2IJX A;  1ISQ A;  3A1J C;  3A1J B;  1IZ5 A;  3U60 F;  2IO4 A;  2ZVW A;  2HII C;  3AIX A;  1RXZ A;  4HK1 A;  3U5Z F;  2AWA A;  4ZTD A;  2ZVM A;  3TBL A;  5A6D A;  1T6L A;  3G65 C;  4L6P A;  1U7B A;  3AIZ A;  3FDS D;  2NTI A;  2HIK B;  2IX2 C;  2IX2 B;  4D2G A; 
#chains in the Genus database with same CATH homology
 3A2F B;  1DML A;  5HAC A;  3P87 A;  5H0T A;  3A1J A;  1YYP A;  3V61 B;  5AUJ A;  1PLQ A;  5DAI A;  5B7O A;  2AVT A;  1B77 A;  2HII A;  1UL1 A;  4CS5 A;  5IXA A;  3GGR C;  3GGR B;  3K4X A;  2HIK C;  3AIX B;  2ZVK A;  5E0V A;  3G65 A;  5JNE D;  3LX1 A;  3HSL X;  1IZ4 A;  3VKX A;  3GPM A;  3WGW A;  3V60 B;  4TR6 A;  3I2M X;  4YHR A;  2ZVL A;  1VYJ A;  5IY4 A;  2ZVV A;  3U61 F;  4RJF A;  3LX2 A;  2IO4 B;  3V62 B;  3P91 A;  1CZD A;  2OD8 A;  5E0U A;  1RXM A;  5DA7 A;  3GGR A;  1AXC A;  1PLR A;  1B8H A;  2HII B;  2Z0L A;  1RWZ A;  2HIK A;  3HI8 A;  2IX2 A;  1GE8 A;  2IZO C;  2IZO B;  4L60 A;  3F1W A;  5CFK A;  1UD9 A;  1U76 A;  3AIZ C;  1W60 A;  2NTI C;  2NTI B;  3IFV A;  1VYM A;  5IWD A;  3G65 B;  3P83 A;  1SXJ F;  3FDS C;  3GPN A;  5E0T A;  2IJX A;  1ISQ A;  3A1J C;  3A1J B;  1IZ5 A;  3U60 F;  2IO4 A;  2ZVW A;  2HII C;  3AIX A;  1RXZ A;  4HK1 A;  3U5Z F;  2AWA A;  4ZTD A;  2ZVM A;  3TBL A;  5A6D A;  1T6L A;  3G65 C;  4L6P A;  1U7B A;  3AIZ A;  3FDS D;  2NTI A;  2HIK B;  2IX2 C;  2IX2 B;  4D2G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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