3GGRC

Crystal structure of the human rad9-hus1-rad1 complex
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
264
structure length
264
Chain Sequence
DQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Cell cycle checkpoint control protein RAD9A
publication title Structure and functional implications of the human rad9-hus1-rad1 cell cycle checkpoint complex
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 264
sequence length 264
ec nomenclature ec 3.1.11.2: Exodeoxyribonuclease III.
pdb deposition date 2009-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02144 Rad1 Repair protein Rad1/Rec1/Rad17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3ggrC00
5E0TA 1PLRA 3FDSD 5IY4A 3VKXA 5DAIA 4L60A 2HIIA 2ZVWA 1VYMA 1RWZA 1B8HA 2NTIB 2ZVLA 2HIKA 1RXMA 2HIIC 2NTIC 3A1JA 3GGRA 1CZDA 1U76A 4D2GA 3K4XA 1PLQA 2IX2C 5HACA 2IO4A 3P83A 1ISQA 2OD8A 3HSLX 2HIKC 5A6DA 5IWDA 1B77A 2IZOB 1VYJA 3GGRC 5AUJA 4CS5A 1SXJF 2ZVMA 1YYPA 3U5ZF 3G65A 2IX2B 1W60A 3LX2A 2ZVVA 3FDSC 3I2MX 3WGWA 1IZ4A 2AWAA 5H0TA 5IXAA 3G65C 4RJFA 3V61B 2Z0LA 3GPNA 1UL1A 1UD9A 3AIXB 3A1JC 2NTIA 3U60F 2HIIB 1U7BA 3A2FB 4TR6A 1DMLA 2AVTA 5E0UA 1GE8A 3P87A 3P91A 1T6LA 5JNED 2HIKB 3HI8A 3AIXA 3V62B 3A1JB 3GGRB 3AIZA 3V60B 3LX1A 5E0VA 2IO4B 5B7OA 4YHRA 3GPMA 1IZ5A 2IX2A 5CFKA 2ZVKA 2IZOC 1RXZA 3TBLA 2IJXA 3AIZC 3U61F 5DA7A 4HK1A 3IFVA 3G65B 4L6PA 1AXCA 3F1WA 4ZTDA
chains in the Genus database with same CATH superfamily
5E0TA 1PLRA 3FDSD 5IY4A 3VKXA 5DAIA 4L60A 2HIIA 2ZVWA 1VYMA 1RWZA 1B8HA 2NTIB 2ZVLA 2HIKA 1RXMA 2HIIC 2NTIC 3A1JA 3GGRA 1CZDA 1U76A 4D2GA 3K4XA 1PLQA 2IX2C 5HACA 2IO4A 3P83A 1ISQA 2OD8A 3HSLX 2HIKC 5A6DA 5IWDA 1B77A 2IZOB 1VYJA 3GGRC 5AUJA 4CS5A 1SXJF 2ZVMA 1YYPA 3U5ZF 3G65A 2IX2B 1W60A 3LX2A 2ZVVA 3FDSC 3I2MX 3WGWA 1IZ4A 2AWAA 5H0TA 5IXAA 3G65C 4RJFA 3V61B 2Z0LA 3GPNA 1UL1A 1UD9A 3AIXB 3A1JC 2NTIA 3U60F 2HIIB 1U7BA 3A2FB 4TR6A 1DMLA 2AVTA 5E0UA 1GE8A 3P87A 3P91A 1T6LA 5JNED 2HIKB 3HI8A 3AIXA 3V62B 3A1JB 3GGRB 3AIZA 3V60B 3LX1A 5E0VA 2IO4B 5B7OA 4YHRA 3GPMA 1IZ5A 2IX2A 5CFKA 2ZVKA 2IZOC 1RXZA 3TBLA 2IJXA 3AIZC 3U61F 5DA7A 4HK1A 3IFVA 3G65B 4L6PA 1AXCA 3F1WA 4ZTDA
chains in the Genus database with same CATH topology
5E0TA 1PLRA 3FDSD 5IY4A 3VKXA 5DAIA 4L60A 2HIIA 2ZVWA 1VYMA 1RWZA 1B8HA 2NTIB 2ZVLA 2HIKA 1RXMA 2HIIC 2NTIC 3A1JA 3GGRA 1CZDA 1U76A 4D2GA 3K4XA 1PLQA 2IX2C 5HACA 2IO4A 3P83A 1ISQA 2OD8A 3HSLX 2HIKC 5A6DA 5IWDA 1B77A 2IZOB 1VYJA 3GGRC 5AUJA 4CS5A 1SXJF 2ZVMA 1YYPA 3U5ZF 3G65A 2IX2B 1W60A 3LX2A 2ZVVA 3FDSC 3I2MX 3WGWA 1IZ4A 2AWAA 5H0TA 5IXAA 3G65C 4RJFA 3V61B 2Z0LA 3GPNA 1UL1A 1UD9A 3AIXB 3A1JC 2NTIA 3U60F 2HIIB 1U7BA 3A2FB 4TR6A 1DMLA 2AVTA 5E0UA 1GE8A 3P87A 3P91A 1T6LA 5JNED 2HIKB 3HI8A 3AIXA 3V62B 3A1JB 3GGRB 3AIZA 3V60B 3LX1A 5E0VA 2IO4B 5B7OA 4YHRA 3GPMA 1IZ5A 2IX2A 5CFKA 2ZVKA 2IZOC 1RXZA 3TBLA 2IJXA 3AIZC 3U61F 5DA7A 4HK1A 3IFVA 3G65B 4L6PA 1AXCA 3F1WA 4ZTDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E0T A;  1PLR A;  3FDS D;  5IY4 A;  3VKX A;  5DAI A;  4L60 A;  2HII A;  2ZVW A;  1VYM A;  1RWZ A;  1B8H A;  2NTI B;  2ZVL A;  2HIK A;  1RXM A;  2HII C;  2NTI C;  3A1J A;  3GGR A;  1CZD A;  1U76 A;  4D2G A;  3K4X A;  1PLQ A;  2IX2 C;  5HAC A;  2IO4 A;  3P83 A;  1ISQ A;  2OD8 A;  3HSL X;  2HIK C;  5A6D A;  5IWD A;  1B77 A;  2IZO B;  1VYJ A;  3GGR C;  5AUJ A;  4CS5 A;  1SXJ F;  2ZVM A;  1YYP A;  3U5Z F;  3G65 A;  2IX2 B;  1W60 A;  3LX2 A;  2ZVV A;  3FDS C;  3I2M X;  3WGW A;  1IZ4 A;  2AWA A;  5H0T A;  5IXA A;  3G65 C;  4RJF A;  3V61 B;  2Z0L A;  3GPN A;  1UL1 A;  1UD9 A;  3AIX B;  3A1J C;  2NTI A;  3U60 F;  2HII B;  1U7B A;  3A2F B;  4TR6 A;  1DML A;  2AVT A;  5E0U A;  1GE8 A;  3P87 A;  3P91 A;  1T6L A;  5JNE D;  2HIK B;  3HI8 A;  3AIX A;  3V62 B;  3A1J B;  3GGR B;  3AIZ A;  3V60 B;  3LX1 A;  5E0V A;  2IO4 B;  5B7O A;  4YHR A;  3GPM A;  1IZ5 A;  2IX2 A;  5CFK A;  2ZVK A;  2IZO C;  1RXZ A;  3TBL A;  2IJX A;  3AIZ C;  3U61 F;  5DA7 A;  4HK1 A;  3IFV A;  3G65 B;  4L6P A;  1AXC A;  3F1W A;  4ZTD A; 
#chains in the Genus database with same CATH topology
 5E0T A;  1PLR A;  3FDS D;  5IY4 A;  3VKX A;  5DAI A;  4L60 A;  2HII A;  2ZVW A;  1VYM A;  1RWZ A;  1B8H A;  2NTI B;  2ZVL A;  2HIK A;  1RXM A;  2HII C;  2NTI C;  3A1J A;  3GGR A;  1CZD A;  1U76 A;  4D2G A;  3K4X A;  1PLQ A;  2IX2 C;  5HAC A;  2IO4 A;  3P83 A;  1ISQ A;  2OD8 A;  3HSL X;  2HIK C;  5A6D A;  5IWD A;  1B77 A;  2IZO B;  1VYJ A;  3GGR C;  5AUJ A;  4CS5 A;  1SXJ F;  2ZVM A;  1YYP A;  3U5Z F;  3G65 A;  2IX2 B;  1W60 A;  3LX2 A;  2ZVV A;  3FDS C;  3I2M X;  3WGW A;  1IZ4 A;  2AWA A;  5H0T A;  5IXA A;  3G65 C;  4RJF A;  3V61 B;  2Z0L A;  3GPN A;  1UL1 A;  1UD9 A;  3AIX B;  3A1J C;  2NTI A;  3U60 F;  2HII B;  1U7B A;  3A2F B;  4TR6 A;  1DML A;  2AVT A;  5E0U A;  1GE8 A;  3P87 A;  3P91 A;  1T6L A;  5JNE D;  2HIK B;  3HI8 A;  3AIX A;  3V62 B;  3A1J B;  3GGR B;  3AIZ A;  3V60 B;  3LX1 A;  5E0V A;  2IO4 B;  5B7O A;  4YHR A;  3GPM A;  1IZ5 A;  2IX2 A;  5CFK A;  2ZVK A;  2IZO C;  1RXZ A;  3TBL A;  2IJX A;  3AIZ C;  3U61 F;  5DA7 A;  4HK1 A;  3IFV A;  3G65 B;  4L6P A;  1AXC A;  3F1W A;  4ZTD A; 
#chains in the Genus database with same CATH homology
 5E0T A;  1PLR A;  3FDS D;  5IY4 A;  3VKX A;  5DAI A;  4L60 A;  2HII A;  2ZVW A;  1VYM A;  1RWZ A;  1B8H A;  2NTI B;  2ZVL A;  2HIK A;  1RXM A;  2HII C;  2NTI C;  3A1J A;  3GGR A;  1CZD A;  1U76 A;  4D2G A;  3K4X A;  1PLQ A;  2IX2 C;  5HAC A;  2IO4 A;  3P83 A;  1ISQ A;  2OD8 A;  3HSL X;  2HIK C;  5A6D A;  5IWD A;  1B77 A;  2IZO B;  1VYJ A;  3GGR C;  5AUJ A;  4CS5 A;  1SXJ F;  2ZVM A;  1YYP A;  3U5Z F;  3G65 A;  2IX2 B;  1W60 A;  3LX2 A;  2ZVV A;  3FDS C;  3I2M X;  3WGW A;  1IZ4 A;  2AWA A;  5H0T A;  5IXA A;  3G65 C;  4RJF A;  3V61 B;  2Z0L A;  3GPN A;  1UL1 A;  1UD9 A;  3AIX B;  3A1J C;  2NTI A;  3U60 F;  2HII B;  1U7B A;  3A2F B;  4TR6 A;  1DML A;  2AVT A;  5E0U A;  1GE8 A;  3P87 A;  3P91 A;  1T6L A;  5JNE D;  2HIK B;  3HI8 A;  3AIX A;  3V62 B;  3A1J B;  3GGR B;  3AIZ A;  3V60 B;  3LX1 A;  5E0V A;  2IO4 B;  5B7O A;  4YHR A;  3GPM A;  1IZ5 A;  2IX2 A;  5CFK A;  2ZVK A;  2IZO C;  1RXZ A;  3TBL A;  2IJX A;  3AIZ C;  3U61 F;  5DA7 A;  4HK1 A;  3IFV A;  3G65 B;  4L6P A;  1AXC A;  3F1W A;  4ZTD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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