3GGRC

Crystal structure of the human rad9-hus1-rad1 complex
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
264
structure length
264
Chain Sequence
DQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Cell cycle checkpoint control protein RAD9A
publication title Structure and functional implications of the human rad9-hus1-rad1 cell cycle checkpoint complex
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 264
sequence length 264
ec nomenclature ec 3.1.11.2: Exodeoxyribonuclease III.
pdb deposition date 2009-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02144 Rad1 Repair protein Rad1/Rec1/Rad17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3ggrC00
3F1WA 1GE8A 4HK1A 3FDSD 3K4XA 3U5ZF 5HACA 1VYMA 3HSLX 5IY4A 2IZOB 1B77A 2IX2C 2HIKB 3VKXA 3FDSC 5B7OA 3LX1A 2HIIB 2IO4B 5IXAA 1UD9A 3A1JB 3V61B 5IWDA 2ZVVA 3AIXB 5H0TA 5AUJA 1AXCA 1ISQA 1T6LA 2Z0LA 4L6PA 1SXJF 5CFKA 3I2MX 1IZ5A 1B8HA 2IJXA 3GPNA 3G65C 2HIKA 3P87A 2NTIC 1RXMA 3AIZA 2AVTA 5JNED 2ZVLA 3G65A 3GGRB 2NTIA 4ZTDA 3LX2A 2AWAA 4D2GA 1DMLA 5E0TA 3A1JA 3P91A 1YYPA 3AIXA 1RWZA 1U76A 4CS5A 2ZVKA 2IX2B 1UL1A 4RJFA 2HIKC 3AIZC 1VYJA 1W60A 5DA7A 3V60B 4TR6A 3WGWA 2OD8A 5E0VA 2HIIC 3GGRA 3P83A 3GPMA 3TBLA 1U7BA 3A1JC 2HIIA 2IO4A 1RXZA 1CZDA 5DAIA 1IZ4A 3A2FB 2ZVWA 3U61F 4L60A 3HI8A 2IZOC 4YHRA 3U60F 2IX2A 3G65B 5E0UA 2NTIB 2ZVMA 1PLRA 5A6DA 3GGRC 3IFVA 3V62B 1PLQA
chains in the Genus database with same CATH superfamily
3F1WA 1GE8A 4HK1A 3FDSD 3K4XA 3U5ZF 5HACA 1VYMA 3HSLX 5IY4A 2IZOB 1B77A 2IX2C 2HIKB 3VKXA 3FDSC 5B7OA 3LX1A 2HIIB 2IO4B 5IXAA 1UD9A 3A1JB 3V61B 5IWDA 2ZVVA 3AIXB 5H0TA 5AUJA 1AXCA 1ISQA 1T6LA 2Z0LA 4L6PA 1SXJF 5CFKA 3I2MX 1IZ5A 1B8HA 2IJXA 3GPNA 3G65C 2HIKA 3P87A 2NTIC 1RXMA 3AIZA 2AVTA 5JNED 2ZVLA 3G65A 3GGRB 2NTIA 4ZTDA 3LX2A 2AWAA 4D2GA 1DMLA 5E0TA 3A1JA 3P91A 1YYPA 3AIXA 1RWZA 1U76A 4CS5A 2ZVKA 2IX2B 1UL1A 4RJFA 2HIKC 3AIZC 1VYJA 1W60A 5DA7A 3V60B 4TR6A 3WGWA 2OD8A 5E0VA 2HIIC 3GGRA 3P83A 3GPMA 3TBLA 1U7BA 3A1JC 2HIIA 2IO4A 1RXZA 1CZDA 5DAIA 1IZ4A 3A2FB 2ZVWA 3U61F 4L60A 3HI8A 2IZOC 4YHRA 3U60F 2IX2A 3G65B 5E0UA 2NTIB 2ZVMA 1PLRA 5A6DA 3GGRC 3IFVA 3V62B 1PLQA
chains in the Genus database with same CATH topology
3F1WA 1GE8A 4HK1A 3FDSD 3K4XA 3U5ZF 5HACA 1VYMA 3HSLX 5IY4A 2IZOB 1B77A 2IX2C 2HIKB 3VKXA 3FDSC 5B7OA 3LX1A 2HIIB 2IO4B 5IXAA 1UD9A 3A1JB 3V61B 5IWDA 2ZVVA 3AIXB 5H0TA 5AUJA 1AXCA 1ISQA 1T6LA 2Z0LA 4L6PA 1SXJF 5CFKA 3I2MX 1IZ5A 1B8HA 2IJXA 3GPNA 3G65C 2HIKA 3P87A 2NTIC 1RXMA 3AIZA 2AVTA 5JNED 2ZVLA 3G65A 3GGRB 2NTIA 4ZTDA 3LX2A 2AWAA 4D2GA 1DMLA 5E0TA 3A1JA 3P91A 1YYPA 3AIXA 1RWZA 1U76A 4CS5A 2ZVKA 2IX2B 1UL1A 4RJFA 2HIKC 3AIZC 1VYJA 1W60A 5DA7A 3V60B 4TR6A 3WGWA 2OD8A 5E0VA 2HIIC 3GGRA 3P83A 3GPMA 3TBLA 1U7BA 3A1JC 2HIIA 2IO4A 1RXZA 1CZDA 5DAIA 1IZ4A 3A2FB 2ZVWA 3U61F 4L60A 3HI8A 2IZOC 4YHRA 3U60F 2IX2A 3G65B 5E0UA 2NTIB 2ZVMA 1PLRA 5A6DA 3GGRC 3IFVA 3V62B 1PLQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F1W A;  1GE8 A;  4HK1 A;  3FDS D;  3K4X A;  3U5Z F;  5HAC A;  1VYM A;  3HSL X;  5IY4 A;  2IZO B;  1B77 A;  2IX2 C;  2HIK B;  3VKX A;  3FDS C;  5B7O A;  3LX1 A;  2HII B;  2IO4 B;  5IXA A;  1UD9 A;  3A1J B;  3V61 B;  5IWD A;  2ZVV A;  3AIX B;  5H0T A;  5AUJ A;  1AXC A;  1ISQ A;  1T6L A;  2Z0L A;  4L6P A;  1SXJ F;  5CFK A;  3I2M X;  1IZ5 A;  1B8H A;  2IJX A;  3GPN A;  3G65 C;  2HIK A;  3P87 A;  2NTI C;  1RXM A;  3AIZ A;  2AVT A;  5JNE D;  2ZVL A;  3G65 A;  3GGR B;  2NTI A;  4ZTD A;  3LX2 A;  2AWA A;  4D2G A;  1DML A;  5E0T A;  3A1J A;  3P91 A;  1YYP A;  3AIX A;  1RWZ A;  1U76 A;  4CS5 A;  2ZVK A;  2IX2 B;  1UL1 A;  4RJF A;  2HIK C;  3AIZ C;  1VYJ A;  1W60 A;  5DA7 A;  3V60 B;  4TR6 A;  3WGW A;  2OD8 A;  5E0V A;  2HII C;  3GGR A;  3P83 A;  3GPM A;  3TBL A;  1U7B A;  3A1J C;  2HII A;  2IO4 A;  1RXZ A;  1CZD A;  5DAI A;  1IZ4 A;  3A2F B;  2ZVW A;  3U61 F;  4L60 A;  3HI8 A;  2IZO C;  4YHR A;  3U60 F;  2IX2 A;  3G65 B;  5E0U A;  2NTI B;  2ZVM A;  1PLR A;  5A6D A;  3GGR C;  3IFV A;  3V62 B;  1PLQ A; 
#chains in the Genus database with same CATH topology
 3F1W A;  1GE8 A;  4HK1 A;  3FDS D;  3K4X A;  3U5Z F;  5HAC A;  1VYM A;  3HSL X;  5IY4 A;  2IZO B;  1B77 A;  2IX2 C;  2HIK B;  3VKX A;  3FDS C;  5B7O A;  3LX1 A;  2HII B;  2IO4 B;  5IXA A;  1UD9 A;  3A1J B;  3V61 B;  5IWD A;  2ZVV A;  3AIX B;  5H0T A;  5AUJ A;  1AXC A;  1ISQ A;  1T6L A;  2Z0L A;  4L6P A;  1SXJ F;  5CFK A;  3I2M X;  1IZ5 A;  1B8H A;  2IJX A;  3GPN A;  3G65 C;  2HIK A;  3P87 A;  2NTI C;  1RXM A;  3AIZ A;  2AVT A;  5JNE D;  2ZVL A;  3G65 A;  3GGR B;  2NTI A;  4ZTD A;  3LX2 A;  2AWA A;  4D2G A;  1DML A;  5E0T A;  3A1J A;  3P91 A;  1YYP A;  3AIX A;  1RWZ A;  1U76 A;  4CS5 A;  2ZVK A;  2IX2 B;  1UL1 A;  4RJF A;  2HIK C;  3AIZ C;  1VYJ A;  1W60 A;  5DA7 A;  3V60 B;  4TR6 A;  3WGW A;  2OD8 A;  5E0V A;  2HII C;  3GGR A;  3P83 A;  3GPM A;  3TBL A;  1U7B A;  3A1J C;  2HII A;  2IO4 A;  1RXZ A;  1CZD A;  5DAI A;  1IZ4 A;  3A2F B;  2ZVW A;  3U61 F;  4L60 A;  3HI8 A;  2IZO C;  4YHR A;  3U60 F;  2IX2 A;  3G65 B;  5E0U A;  2NTI B;  2ZVM A;  1PLR A;  5A6D A;  3GGR C;  3IFV A;  3V62 B;  1PLQ A; 
#chains in the Genus database with same CATH homology
 3F1W A;  1GE8 A;  4HK1 A;  3FDS D;  3K4X A;  3U5Z F;  5HAC A;  1VYM A;  3HSL X;  5IY4 A;  2IZO B;  1B77 A;  2IX2 C;  2HIK B;  3VKX A;  3FDS C;  5B7O A;  3LX1 A;  2HII B;  2IO4 B;  5IXA A;  1UD9 A;  3A1J B;  3V61 B;  5IWD A;  2ZVV A;  3AIX B;  5H0T A;  5AUJ A;  1AXC A;  1ISQ A;  1T6L A;  2Z0L A;  4L6P A;  1SXJ F;  5CFK A;  3I2M X;  1IZ5 A;  1B8H A;  2IJX A;  3GPN A;  3G65 C;  2HIK A;  3P87 A;  2NTI C;  1RXM A;  3AIZ A;  2AVT A;  5JNE D;  2ZVL A;  3G65 A;  3GGR B;  2NTI A;  4ZTD A;  3LX2 A;  2AWA A;  4D2G A;  1DML A;  5E0T A;  3A1J A;  3P91 A;  1YYP A;  3AIX A;  1RWZ A;  1U76 A;  4CS5 A;  2ZVK A;  2IX2 B;  1UL1 A;  4RJF A;  2HIK C;  3AIZ C;  1VYJ A;  1W60 A;  5DA7 A;  3V60 B;  4TR6 A;  3WGW A;  2OD8 A;  5E0V A;  2HII C;  3GGR A;  3P83 A;  3GPM A;  3TBL A;  1U7B A;  3A1J C;  2HII A;  2IO4 A;  1RXZ A;  1CZD A;  5DAI A;  1IZ4 A;  3A2F B;  2ZVW A;  3U61 F;  4L60 A;  3HI8 A;  2IZO C;  4YHR A;  3U60 F;  2IX2 A;  3G65 B;  5E0U A;  2NTI B;  2ZVM A;  1PLR A;  5A6D A;  3GGR C;  3IFV A;  3V62 B;  1PLQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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