3HSLX

The crystal structure of pf-8, the dna polymerase accessory subunit from kaposi's sarcoma-associated herpesvirus
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
297
structure length
287
Chain Sequence
DFHYGVRVDVTLLSKIRRVNEHIKSATKTGVVQVHGSACTPTLSVLSSVGTAGVLGLRIKNALTPLVGHTEGSGDVSFSFRNTSVGSGFTHTRELFGANVLDAGIAFYRPQFVRTTISYGDNLTSTVHKSVVDQKGILPFHDRMEAGGRTTRLLLCGKTGAFLLKWLRQQKTKEDQTVTVSVSETLSIVTFSLGGVSKIIDFKPETKPVSGWDGLKGKKSVDVGVVHTDALSRVSLESLIAALRLCKVPGWFTPGLIWHSNEILEVEGVPTGCQSGDVKLSVLLLEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
molecule keywords ORF59
publication title The crystal structure of PF-8, the DNA polymerase accessory subunit from Kaposi's sarcoma-associated herpesvirus.
pubmed doi rcsb
source organism Human herpesvirus 8
total genus 60
structure length 287
sequence length 297
ec nomenclature
pdb deposition date 2009-06-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3hslX00
1RXZA 5E0TA 1PLQA 2IX2B 4ZTDA 2IO4A 3TBLA 3P91A 3WGWA 1UD9A 2IO4B 1UL1A 3A2FB 3LX1A 2HIIA 1U76A 3LX2A 2HIKC 4RJFA 2HIIB 2ZVMA 2ZVWA 1GE8A 3U60F 1VYJA 3AIXA 3FDSC 3AIXB 1RWZA 3AIZC 5B7OA 3A1JC 3K4XA 3HI8A 3GGRC 2HIKA 2IZOC 3FDSD 2HIKB 2AVTA 5CFKA 3G65C 2ZVKA 3IFVA 3V62B 3VKXA 4HK1A 4L6PA 1B77A 3GPMA 3V61B 2Z0LA 2ZVLA 5H0TA 3AIZA 3I2MX 3A1JA 5IXAA 3P87A 2NTIC 3A1JB 5IY4A 1U7BA 3F1WA 2IX2C 1IZ5A 3GGRA 1ISQA 2AWAA 5DA7A 3U5ZF 3GGRB 3HSLX 2IJXA 2IZOB 1DMLA 1B8HA 4L60A 1IZ4A 1CZDA 1AXCA 2OD8A 1YYPA 3G65A 1VYMA 5HACA 1RXMA 3G65B 2HIIC 4TR6A 5DAIA 1W60A 5JNED 3P83A 1T6LA 3V60B 3U61F 4YHRA 5E0VA 2NTIA 1SXJF 1PLRA 4CS5A 5IWDA 5A6DA 2ZVVA 5E0UA 2NTIB 5AUJA 4D2GA 2IX2A 3GPNA
chains in the Genus database with same CATH superfamily
1RXZA 5E0TA 1PLQA 2IX2B 4ZTDA 2IO4A 3TBLA 3P91A 3WGWA 1UD9A 2IO4B 1UL1A 3A2FB 3LX1A 2HIIA 1U76A 3LX2A 2HIKC 4RJFA 2HIIB 2ZVMA 2ZVWA 1GE8A 3U60F 1VYJA 3AIXA 3FDSC 3AIXB 1RWZA 3AIZC 5B7OA 3A1JC 3K4XA 3HI8A 3GGRC 2HIKA 2IZOC 3FDSD 2HIKB 2AVTA 5CFKA 3G65C 2ZVKA 3IFVA 3V62B 3VKXA 4HK1A 4L6PA 1B77A 3GPMA 3V61B 2Z0LA 2ZVLA 5H0TA 3AIZA 3I2MX 3A1JA 5IXAA 3P87A 2NTIC 3A1JB 5IY4A 1U7BA 3F1WA 2IX2C 1IZ5A 3GGRA 1ISQA 2AWAA 5DA7A 3U5ZF 3GGRB 3HSLX 2IJXA 2IZOB 1DMLA 1B8HA 4L60A 1IZ4A 1CZDA 1AXCA 2OD8A 1YYPA 3G65A 1VYMA 5HACA 1RXMA 3G65B 2HIIC 4TR6A 5DAIA 1W60A 5JNED 3P83A 1T6LA 3V60B 3U61F 4YHRA 5E0VA 2NTIA 1SXJF 1PLRA 4CS5A 5IWDA 5A6DA 2ZVVA 5E0UA 2NTIB 5AUJA 4D2GA 2IX2A 3GPNA
chains in the Genus database with same CATH topology
1RXZA 5E0TA 1PLQA 2IX2B 4ZTDA 2IO4A 3TBLA 3P91A 3WGWA 1UD9A 2IO4B 1UL1A 3A2FB 3LX1A 2HIIA 1U76A 3LX2A 2HIKC 4RJFA 2HIIB 2ZVMA 2ZVWA 1GE8A 3U60F 1VYJA 3AIXA 3FDSC 3AIXB 1RWZA 3AIZC 5B7OA 3A1JC 3K4XA 3HI8A 3GGRC 2HIKA 2IZOC 3FDSD 2HIKB 2AVTA 5CFKA 3G65C 2ZVKA 3IFVA 3V62B 3VKXA 4HK1A 4L6PA 1B77A 3GPMA 3V61B 2Z0LA 2ZVLA 5H0TA 3AIZA 3I2MX 3A1JA 5IXAA 3P87A 2NTIC 3A1JB 5IY4A 1U7BA 3F1WA 2IX2C 1IZ5A 3GGRA 1ISQA 2AWAA 5DA7A 3U5ZF 3GGRB 3HSLX 2IJXA 2IZOB 1DMLA 1B8HA 4L60A 1IZ4A 1CZDA 1AXCA 2OD8A 1YYPA 3G65A 1VYMA 5HACA 1RXMA 3G65B 2HIIC 4TR6A 5DAIA 1W60A 5JNED 3P83A 1T6LA 3V60B 3U61F 4YHRA 5E0VA 2NTIA 1SXJF 1PLRA 4CS5A 5IWDA 5A6DA 2ZVVA 5E0UA 2NTIB 5AUJA 4D2GA 2IX2A 3GPNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RXZ A;  5E0T A;  1PLQ A;  2IX2 B;  4ZTD A;  2IO4 A;  3TBL A;  3P91 A;  3WGW A;  1UD9 A;  2IO4 B;  1UL1 A;  3A2F B;  3LX1 A;  2HII A;  1U76 A;  3LX2 A;  2HIK C;  4RJF A;  2HII B;  2ZVM A;  2ZVW A;  1GE8 A;  3U60 F;  1VYJ A;  3AIX A;  3FDS C;  3AIX B;  1RWZ A;  3AIZ C;  5B7O A;  3A1J C;  3K4X A;  3HI8 A;  3GGR C;  2HIK A;  2IZO C;  3FDS D;  2HIK B;  2AVT A;  5CFK A;  3G65 C;  2ZVK A;  3IFV A;  3V62 B;  3VKX A;  4HK1 A;  4L6P A;  1B77 A;  3GPM A;  3V61 B;  2Z0L A;  2ZVL A;  5H0T A;  3AIZ A;  3I2M X;  3A1J A;  5IXA A;  3P87 A;  2NTI C;  3A1J B;  5IY4 A;  1U7B A;  3F1W A;  2IX2 C;  1IZ5 A;  3GGR A;  1ISQ A;  2AWA A;  5DA7 A;  3U5Z F;  3GGR B;  3HSL X;  2IJX A;  2IZO B;  1DML A;  1B8H A;  4L60 A;  1IZ4 A;  1CZD A;  1AXC A;  2OD8 A;  1YYP A;  3G65 A;  1VYM A;  5HAC A;  1RXM A;  3G65 B;  2HII C;  4TR6 A;  5DAI A;  1W60 A;  5JNE D;  3P83 A;  1T6L A;  3V60 B;  3U61 F;  4YHR A;  5E0V A;  2NTI A;  1SXJ F;  1PLR A;  4CS5 A;  5IWD A;  5A6D A;  2ZVV A;  5E0U A;  2NTI B;  5AUJ A;  4D2G A;  2IX2 A;  3GPN A; 
#chains in the Genus database with same CATH topology
 1RXZ A;  5E0T A;  1PLQ A;  2IX2 B;  4ZTD A;  2IO4 A;  3TBL A;  3P91 A;  3WGW A;  1UD9 A;  2IO4 B;  1UL1 A;  3A2F B;  3LX1 A;  2HII A;  1U76 A;  3LX2 A;  2HIK C;  4RJF A;  2HII B;  2ZVM A;  2ZVW A;  1GE8 A;  3U60 F;  1VYJ A;  3AIX A;  3FDS C;  3AIX B;  1RWZ A;  3AIZ C;  5B7O A;  3A1J C;  3K4X A;  3HI8 A;  3GGR C;  2HIK A;  2IZO C;  3FDS D;  2HIK B;  2AVT A;  5CFK A;  3G65 C;  2ZVK A;  3IFV A;  3V62 B;  3VKX A;  4HK1 A;  4L6P A;  1B77 A;  3GPM A;  3V61 B;  2Z0L A;  2ZVL A;  5H0T A;  3AIZ A;  3I2M X;  3A1J A;  5IXA A;  3P87 A;  2NTI C;  3A1J B;  5IY4 A;  1U7B A;  3F1W A;  2IX2 C;  1IZ5 A;  3GGR A;  1ISQ A;  2AWA A;  5DA7 A;  3U5Z F;  3GGR B;  3HSL X;  2IJX A;  2IZO B;  1DML A;  1B8H A;  4L60 A;  1IZ4 A;  1CZD A;  1AXC A;  2OD8 A;  1YYP A;  3G65 A;  1VYM A;  5HAC A;  1RXM A;  3G65 B;  2HII C;  4TR6 A;  5DAI A;  1W60 A;  5JNE D;  3P83 A;  1T6L A;  3V60 B;  3U61 F;  4YHR A;  5E0V A;  2NTI A;  1SXJ F;  1PLR A;  4CS5 A;  5IWD A;  5A6D A;  2ZVV A;  5E0U A;  2NTI B;  5AUJ A;  4D2G A;  2IX2 A;  3GPN A; 
#chains in the Genus database with same CATH homology
 1RXZ A;  5E0T A;  1PLQ A;  2IX2 B;  4ZTD A;  2IO4 A;  3TBL A;  3P91 A;  3WGW A;  1UD9 A;  2IO4 B;  1UL1 A;  3A2F B;  3LX1 A;  2HII A;  1U76 A;  3LX2 A;  2HIK C;  4RJF A;  2HII B;  2ZVM A;  2ZVW A;  1GE8 A;  3U60 F;  1VYJ A;  3AIX A;  3FDS C;  3AIX B;  1RWZ A;  3AIZ C;  5B7O A;  3A1J C;  3K4X A;  3HI8 A;  3GGR C;  2HIK A;  2IZO C;  3FDS D;  2HIK B;  2AVT A;  5CFK A;  3G65 C;  2ZVK A;  3IFV A;  3V62 B;  3VKX A;  4HK1 A;  4L6P A;  1B77 A;  3GPM A;  3V61 B;  2Z0L A;  2ZVL A;  5H0T A;  3AIZ A;  3I2M X;  3A1J A;  5IXA A;  3P87 A;  2NTI C;  3A1J B;  5IY4 A;  1U7B A;  3F1W A;  2IX2 C;  1IZ5 A;  3GGR A;  1ISQ A;  2AWA A;  5DA7 A;  3U5Z F;  3GGR B;  3HSL X;  2IJX A;  2IZO B;  1DML A;  1B8H A;  4L60 A;  1IZ4 A;  1CZD A;  1AXC A;  2OD8 A;  1YYP A;  3G65 A;  1VYM A;  5HAC A;  1RXM A;  3G65 B;  2HII C;  4TR6 A;  5DAI A;  1W60 A;  5JNE D;  3P83 A;  1T6L A;  3V60 B;  3U61 F;  4YHR A;  5E0V A;  2NTI A;  1SXJ F;  1PLR A;  4CS5 A;  5IWD A;  5A6D A;  2ZVV A;  5E0U A;  2NTI B;  5AUJ A;  4D2G A;  2IX2 A;  3GPN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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