3I2MX

The crystal structure of pf-8, the dna polymerase accessory subunit from kaposi s sarcoma-associated herpesvirus
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
297
structure length
288
Chain Sequence
DFHYGVRVDVTLLSKIRRVNEHIKSATKTGVVQVHGSACTPTLSVLSSVGTAGVLGMRIKNALTPLVGHTEGSGDVSFSFRNTSVGSGFTHTRELFGANVLDAGIAFYRKPQFVRTTISYGDNLTSTVHKSVVDQKGILPFHDRMEAGGRTTRLMLCGKTGAFLLKWLRQQKTKEDQTVTVSVSETLSIVTFSLGGVSKIIDFKPETKPVSGWDGLKGKKSVDVGVVHTDALSRVSLESLIAALRMCKVPGWFTPGLIWHSNEILEVEGVPTGCQSGDVKLSVLLLEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
molecule keywords ORF59
publication title The crystal structure of PF-8, the DNA polymerase accessory subunit from Kaposi's sarcoma-associated herpesvirus.
pubmed doi rcsb
source organism Human herpesvirus 8
total genus 66
structure length 288
sequence length 297
ec nomenclature
pdb deposition date 2009-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3i2mX00
1ISQA 1CZDA 3A1JC 2ZVWA 3V62B 5E0UA 5IXAA 4HK1A 3LX2A 1UD9A 3F1WA 3U60F 3AIXA 2HIKB 2HIIB 1B77A 2IX2B 3G65A 2ZVLA 3GGRB 5DA7A 3LX1A 3K4XA 1AXCA 1VYMA 3GPMA 1U76A 1IZ5A 5DAIA 5H0TA 2AWAA 5IY4A 1IZ4A 5HACA 5IWDA 3AIZC 1PLRA 4D2GA 5B7OA 1B8HA 2NTIB 3A1JA 5JNED 3GPNA 5E0TA 3P87A 1GE8A 3U5ZF 3U61F 2IO4A 1VYJA 3HI8A 3TBLA 5CFKA 1DMLA 3IFVA 2HIKC 2HIIC 3AIXB 2IX2C 1RWZA 5AUJA 3FDSC 3GGRC 3A2FB 3FDSD 3G65B 3VKXA 2IJXA 1RXMA 1RXZA 2AVTA 4L60A 3P83A 3HSLX 2NTIC 4TR6A 2ZVKA 2ZVMA 2IZOB 2ZVVA 3A1JB 5A6DA 3I2MX 1SXJF 4L6PA 3V60B 4YHRA 2IO4B 2HIKA 4ZTDA 2HIIA 3P91A 4CS5A 2IX2A 1PLQA 2Z0LA 4RJFA 3GGRA 1U7BA 3AIZA 3G65C 2OD8A 3WGWA 1T6LA 1YYPA 2NTIA 1W60A 3V61B 5E0VA 2IZOC 1UL1A
chains in the Genus database with same CATH superfamily
1ISQA 1CZDA 3A1JC 2ZVWA 3V62B 5E0UA 5IXAA 4HK1A 3LX2A 1UD9A 3F1WA 3U60F 3AIXA 2HIKB 2HIIB 1B77A 2IX2B 3G65A 2ZVLA 3GGRB 5DA7A 3LX1A 3K4XA 1AXCA 1VYMA 3GPMA 1U76A 1IZ5A 5DAIA 5H0TA 2AWAA 5IY4A 1IZ4A 5HACA 5IWDA 3AIZC 1PLRA 4D2GA 5B7OA 1B8HA 2NTIB 3A1JA 5JNED 3GPNA 5E0TA 3P87A 1GE8A 3U5ZF 3U61F 2IO4A 1VYJA 3HI8A 3TBLA 5CFKA 1DMLA 3IFVA 2HIKC 2HIIC 3AIXB 2IX2C 1RWZA 5AUJA 3FDSC 3GGRC 3A2FB 3FDSD 3G65B 3VKXA 2IJXA 1RXMA 1RXZA 2AVTA 4L60A 3P83A 3HSLX 2NTIC 4TR6A 2ZVKA 2ZVMA 2IZOB 2ZVVA 3A1JB 5A6DA 3I2MX 1SXJF 4L6PA 3V60B 4YHRA 2IO4B 2HIKA 4ZTDA 2HIIA 3P91A 4CS5A 2IX2A 1PLQA 2Z0LA 4RJFA 3GGRA 1U7BA 3AIZA 3G65C 2OD8A 3WGWA 1T6LA 1YYPA 2NTIA 1W60A 3V61B 5E0VA 2IZOC 1UL1A
chains in the Genus database with same CATH topology
1ISQA 1CZDA 3A1JC 2ZVWA 3V62B 5E0UA 5IXAA 4HK1A 3LX2A 1UD9A 3F1WA 3U60F 3AIXA 2HIKB 2HIIB 1B77A 2IX2B 3G65A 2ZVLA 3GGRB 5DA7A 3LX1A 3K4XA 1AXCA 1VYMA 3GPMA 1U76A 1IZ5A 5DAIA 5H0TA 2AWAA 5IY4A 1IZ4A 5HACA 5IWDA 3AIZC 1PLRA 4D2GA 5B7OA 1B8HA 2NTIB 3A1JA 5JNED 3GPNA 5E0TA 3P87A 1GE8A 3U5ZF 3U61F 2IO4A 1VYJA 3HI8A 3TBLA 5CFKA 1DMLA 3IFVA 2HIKC 2HIIC 3AIXB 2IX2C 1RWZA 5AUJA 3FDSC 3GGRC 3A2FB 3FDSD 3G65B 3VKXA 2IJXA 1RXMA 1RXZA 2AVTA 4L60A 3P83A 3HSLX 2NTIC 4TR6A 2ZVKA 2ZVMA 2IZOB 2ZVVA 3A1JB 5A6DA 3I2MX 1SXJF 4L6PA 3V60B 4YHRA 2IO4B 2HIKA 4ZTDA 2HIIA 3P91A 4CS5A 2IX2A 1PLQA 2Z0LA 4RJFA 3GGRA 1U7BA 3AIZA 3G65C 2OD8A 3WGWA 1T6LA 1YYPA 2NTIA 1W60A 3V61B 5E0VA 2IZOC 1UL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ISQ A;  1CZD A;  3A1J C;  2ZVW A;  3V62 B;  5E0U A;  5IXA A;  4HK1 A;  3LX2 A;  1UD9 A;  3F1W A;  3U60 F;  3AIX A;  2HIK B;  2HII B;  1B77 A;  2IX2 B;  3G65 A;  2ZVL A;  3GGR B;  5DA7 A;  3LX1 A;  3K4X A;  1AXC A;  1VYM A;  3GPM A;  1U76 A;  1IZ5 A;  5DAI A;  5H0T A;  2AWA A;  5IY4 A;  1IZ4 A;  5HAC A;  5IWD A;  3AIZ C;  1PLR A;  4D2G A;  5B7O A;  1B8H A;  2NTI B;  3A1J A;  5JNE D;  3GPN A;  5E0T A;  3P87 A;  1GE8 A;  3U5Z F;  3U61 F;  2IO4 A;  1VYJ A;  3HI8 A;  3TBL A;  5CFK A;  1DML A;  3IFV A;  2HIK C;  2HII C;  3AIX B;  2IX2 C;  1RWZ A;  5AUJ A;  3FDS C;  3GGR C;  3A2F B;  3FDS D;  3G65 B;  3VKX A;  2IJX A;  1RXM A;  1RXZ A;  2AVT A;  4L60 A;  3P83 A;  3HSL X;  2NTI C;  4TR6 A;  2ZVK A;  2ZVM A;  2IZO B;  2ZVV A;  3A1J B;  5A6D A;  3I2M X;  1SXJ F;  4L6P A;  3V60 B;  4YHR A;  2IO4 B;  2HIK A;  4ZTD A;  2HII A;  3P91 A;  4CS5 A;  2IX2 A;  1PLQ A;  2Z0L A;  4RJF A;  3GGR A;  1U7B A;  3AIZ A;  3G65 C;  2OD8 A;  3WGW A;  1T6L A;  1YYP A;  2NTI A;  1W60 A;  3V61 B;  5E0V A;  2IZO C;  1UL1 A; 
#chains in the Genus database with same CATH topology
 1ISQ A;  1CZD A;  3A1J C;  2ZVW A;  3V62 B;  5E0U A;  5IXA A;  4HK1 A;  3LX2 A;  1UD9 A;  3F1W A;  3U60 F;  3AIX A;  2HIK B;  2HII B;  1B77 A;  2IX2 B;  3G65 A;  2ZVL A;  3GGR B;  5DA7 A;  3LX1 A;  3K4X A;  1AXC A;  1VYM A;  3GPM A;  1U76 A;  1IZ5 A;  5DAI A;  5H0T A;  2AWA A;  5IY4 A;  1IZ4 A;  5HAC A;  5IWD A;  3AIZ C;  1PLR A;  4D2G A;  5B7O A;  1B8H A;  2NTI B;  3A1J A;  5JNE D;  3GPN A;  5E0T A;  3P87 A;  1GE8 A;  3U5Z F;  3U61 F;  2IO4 A;  1VYJ A;  3HI8 A;  3TBL A;  5CFK A;  1DML A;  3IFV A;  2HIK C;  2HII C;  3AIX B;  2IX2 C;  1RWZ A;  5AUJ A;  3FDS C;  3GGR C;  3A2F B;  3FDS D;  3G65 B;  3VKX A;  2IJX A;  1RXM A;  1RXZ A;  2AVT A;  4L60 A;  3P83 A;  3HSL X;  2NTI C;  4TR6 A;  2ZVK A;  2ZVM A;  2IZO B;  2ZVV A;  3A1J B;  5A6D A;  3I2M X;  1SXJ F;  4L6P A;  3V60 B;  4YHR A;  2IO4 B;  2HIK A;  4ZTD A;  2HII A;  3P91 A;  4CS5 A;  2IX2 A;  1PLQ A;  2Z0L A;  4RJF A;  3GGR A;  1U7B A;  3AIZ A;  3G65 C;  2OD8 A;  3WGW A;  1T6L A;  1YYP A;  2NTI A;  1W60 A;  3V61 B;  5E0V A;  2IZO C;  1UL1 A; 
#chains in the Genus database with same CATH homology
 1ISQ A;  1CZD A;  3A1J C;  2ZVW A;  3V62 B;  5E0U A;  5IXA A;  4HK1 A;  3LX2 A;  1UD9 A;  3F1W A;  3U60 F;  3AIX A;  2HIK B;  2HII B;  1B77 A;  2IX2 B;  3G65 A;  2ZVL A;  3GGR B;  5DA7 A;  3LX1 A;  3K4X A;  1AXC A;  1VYM A;  3GPM A;  1U76 A;  1IZ5 A;  5DAI A;  5H0T A;  2AWA A;  5IY4 A;  1IZ4 A;  5HAC A;  5IWD A;  3AIZ C;  1PLR A;  4D2G A;  5B7O A;  1B8H A;  2NTI B;  3A1J A;  5JNE D;  3GPN A;  5E0T A;  3P87 A;  1GE8 A;  3U5Z F;  3U61 F;  2IO4 A;  1VYJ A;  3HI8 A;  3TBL A;  5CFK A;  1DML A;  3IFV A;  2HIK C;  2HII C;  3AIX B;  2IX2 C;  1RWZ A;  5AUJ A;  3FDS C;  3GGR C;  3A2F B;  3FDS D;  3G65 B;  3VKX A;  2IJX A;  1RXM A;  1RXZ A;  2AVT A;  4L60 A;  3P83 A;  3HSL X;  2NTI C;  4TR6 A;  2ZVK A;  2ZVM A;  2IZO B;  2ZVV A;  3A1J B;  5A6D A;  3I2M X;  1SXJ F;  4L6P A;  3V60 B;  4YHR A;  2IO4 B;  2HIK A;  4ZTD A;  2HII A;  3P91 A;  4CS5 A;  2IX2 A;  1PLQ A;  2Z0L A;  4RJF A;  3GGR A;  1U7B A;  3AIZ A;  3G65 C;  2OD8 A;  3WGW A;  1T6L A;  1YYP A;  2NTI A;  1W60 A;  3V61 B;  5E0V A;  2IZO C;  1UL1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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