3I2MX

The crystal structure of pf-8, the dna polymerase accessory subunit from kaposi s sarcoma-associated herpesvirus
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
297
structure length
288
Chain Sequence
DFHYGVRVDVTLLSKIRRVNEHIKSATKTGVVQVHGSACTPTLSVLSSVGTAGVLGMRIKNALTPLVGHTEGSGDVSFSFRNTSVGSGFTHTRELFGANVLDAGIAFYRKPQFVRTTISYGDNLTSTVHKSVVDQKGILPFHDRMEAGGRTTRLMLCGKTGAFLLKWLRQQKTKEDQTVTVSVSETLSIVTFSLGGVSKIIDFKPETKPVSGWDGLKGKKSVDVGVVHTDALSRVSLESLIAALRMCKVPGWFTPGLIWHSNEILEVEGVPTGCQSGDVKLSVLLLEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
molecule keywords ORF59
publication title The crystal structure of PF-8, the DNA polymerase accessory subunit from Kaposi's sarcoma-associated herpesvirus.
pubmed doi rcsb
source organism Human herpesvirus 8
total genus 66
structure length 288
sequence length 297
ec nomenclature
pdb deposition date 2009-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3i2mX00
4D2GA 1IZ5A 1B77A 5DA7A 2ZVMA 3GPMA 4L60A 2Z0LA 3U5ZF 1YYPA 3GGRA 3VKXA 3AIZC 1PLQA 2NTIB 1T6LA 3A1JC 3AIXB 3FDSC 5B7OA 1U7BA 1CZDA 5IY4A 3I2MX 5HACA 2OD8A 3LX1A 2NTIA 2HIIC 3AIXA 3K4XA 2HIKC 1ISQA 3V62B 2IJXA 5CFKA 2IZOB 5JNED 3TBLA 3WGWA 5AUJA 1UD9A 3HSLX 3F1WA 5IWDA 3A1JB 3V60B 1RWZA 3P87A 5H0TA 3GPNA 1DMLA 4L6PA 1AXCA 4HK1A 5IXAA 2AWAA 5A6DA 4ZTDA 2IX2C 1RXZA 3G65B 1VYJA 3A1JA 5E0TA 3GGRC 3A2FB 4CS5A 3HI8A 1UL1A 3V61B 1B8HA 1VYMA 2AVTA 2HIIA 3G65A 1PLRA 5DAIA 2HIKA 5E0VA 3P83A 2NTIC 2ZVVA 3U61F 3AIZA 3P91A 2IO4A 2HIIB 1W60A 2HIKB 1RXMA 3IFVA 2ZVWA 2IX2A 1GE8A 4RJFA 1U76A 3LX2A 1IZ4A 2IZOC 2ZVKA 2IO4B 5E0UA 3FDSD 4TR6A 2IX2B 3G65C 3GGRB 2ZVLA 3U60F 4YHRA 1SXJF
chains in the Genus database with same CATH superfamily
4D2GA 1IZ5A 1B77A 5DA7A 2ZVMA 3GPMA 4L60A 2Z0LA 3U5ZF 1YYPA 3GGRA 3VKXA 3AIZC 1PLQA 2NTIB 1T6LA 3A1JC 3AIXB 3FDSC 5B7OA 1U7BA 1CZDA 5IY4A 3I2MX 5HACA 2OD8A 3LX1A 2NTIA 2HIIC 3AIXA 3K4XA 2HIKC 1ISQA 3V62B 2IJXA 5CFKA 2IZOB 5JNED 3TBLA 3WGWA 5AUJA 1UD9A 3HSLX 3F1WA 5IWDA 3A1JB 3V60B 1RWZA 3P87A 5H0TA 3GPNA 1DMLA 4L6PA 1AXCA 4HK1A 5IXAA 2AWAA 5A6DA 4ZTDA 2IX2C 1RXZA 3G65B 1VYJA 3A1JA 5E0TA 3GGRC 3A2FB 4CS5A 3HI8A 1UL1A 3V61B 1B8HA 1VYMA 2AVTA 2HIIA 3G65A 1PLRA 5DAIA 2HIKA 5E0VA 3P83A 2NTIC 2ZVVA 3U61F 3AIZA 3P91A 2IO4A 2HIIB 1W60A 2HIKB 1RXMA 3IFVA 2ZVWA 2IX2A 1GE8A 4RJFA 1U76A 3LX2A 1IZ4A 2IZOC 2ZVKA 2IO4B 5E0UA 3FDSD 4TR6A 2IX2B 3G65C 3GGRB 2ZVLA 3U60F 4YHRA 1SXJF
chains in the Genus database with same CATH topology
4D2GA 1IZ5A 1B77A 5DA7A 2ZVMA 3GPMA 4L60A 2Z0LA 3U5ZF 1YYPA 3GGRA 3VKXA 3AIZC 1PLQA 2NTIB 1T6LA 3A1JC 3AIXB 3FDSC 5B7OA 1U7BA 1CZDA 5IY4A 3I2MX 5HACA 2OD8A 3LX1A 2NTIA 2HIIC 3AIXA 3K4XA 2HIKC 1ISQA 3V62B 2IJXA 5CFKA 2IZOB 5JNED 3TBLA 3WGWA 5AUJA 1UD9A 3HSLX 3F1WA 5IWDA 3A1JB 3V60B 1RWZA 3P87A 5H0TA 3GPNA 1DMLA 4L6PA 1AXCA 4HK1A 5IXAA 2AWAA 5A6DA 4ZTDA 2IX2C 1RXZA 3G65B 1VYJA 3A1JA 5E0TA 3GGRC 3A2FB 4CS5A 3HI8A 1UL1A 3V61B 1B8HA 1VYMA 2AVTA 2HIIA 3G65A 1PLRA 5DAIA 2HIKA 5E0VA 3P83A 2NTIC 2ZVVA 3U61F 3AIZA 3P91A 2IO4A 2HIIB 1W60A 2HIKB 1RXMA 3IFVA 2ZVWA 2IX2A 1GE8A 4RJFA 1U76A 3LX2A 1IZ4A 2IZOC 2ZVKA 2IO4B 5E0UA 3FDSD 4TR6A 2IX2B 3G65C 3GGRB 2ZVLA 3U60F 4YHRA 1SXJF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D2G A;  1IZ5 A;  1B77 A;  5DA7 A;  2ZVM A;  3GPM A;  4L60 A;  2Z0L A;  3U5Z F;  1YYP A;  3GGR A;  3VKX A;  3AIZ C;  1PLQ A;  2NTI B;  1T6L A;  3A1J C;  3AIX B;  3FDS C;  5B7O A;  1U7B A;  1CZD A;  5IY4 A;  3I2M X;  5HAC A;  2OD8 A;  3LX1 A;  2NTI A;  2HII C;  3AIX A;  3K4X A;  2HIK C;  1ISQ A;  3V62 B;  2IJX A;  5CFK A;  2IZO B;  5JNE D;  3TBL A;  3WGW A;  5AUJ A;  1UD9 A;  3HSL X;  3F1W A;  5IWD A;  3A1J B;  3V60 B;  1RWZ A;  3P87 A;  5H0T A;  3GPN A;  1DML A;  4L6P A;  1AXC A;  4HK1 A;  5IXA A;  2AWA A;  5A6D A;  4ZTD A;  2IX2 C;  1RXZ A;  3G65 B;  1VYJ A;  3A1J A;  5E0T A;  3GGR C;  3A2F B;  4CS5 A;  3HI8 A;  1UL1 A;  3V61 B;  1B8H A;  1VYM A;  2AVT A;  2HII A;  3G65 A;  1PLR A;  5DAI A;  2HIK A;  5E0V A;  3P83 A;  2NTI C;  2ZVV A;  3U61 F;  3AIZ A;  3P91 A;  2IO4 A;  2HII B;  1W60 A;  2HIK B;  1RXM A;  3IFV A;  2ZVW A;  2IX2 A;  1GE8 A;  4RJF A;  1U76 A;  3LX2 A;  1IZ4 A;  2IZO C;  2ZVK A;  2IO4 B;  5E0U A;  3FDS D;  4TR6 A;  2IX2 B;  3G65 C;  3GGR B;  2ZVL A;  3U60 F;  4YHR A;  1SXJ F; 
#chains in the Genus database with same CATH topology
 4D2G A;  1IZ5 A;  1B77 A;  5DA7 A;  2ZVM A;  3GPM A;  4L60 A;  2Z0L A;  3U5Z F;  1YYP A;  3GGR A;  3VKX A;  3AIZ C;  1PLQ A;  2NTI B;  1T6L A;  3A1J C;  3AIX B;  3FDS C;  5B7O A;  1U7B A;  1CZD A;  5IY4 A;  3I2M X;  5HAC A;  2OD8 A;  3LX1 A;  2NTI A;  2HII C;  3AIX A;  3K4X A;  2HIK C;  1ISQ A;  3V62 B;  2IJX A;  5CFK A;  2IZO B;  5JNE D;  3TBL A;  3WGW A;  5AUJ A;  1UD9 A;  3HSL X;  3F1W A;  5IWD A;  3A1J B;  3V60 B;  1RWZ A;  3P87 A;  5H0T A;  3GPN A;  1DML A;  4L6P A;  1AXC A;  4HK1 A;  5IXA A;  2AWA A;  5A6D A;  4ZTD A;  2IX2 C;  1RXZ A;  3G65 B;  1VYJ A;  3A1J A;  5E0T A;  3GGR C;  3A2F B;  4CS5 A;  3HI8 A;  1UL1 A;  3V61 B;  1B8H A;  1VYM A;  2AVT A;  2HII A;  3G65 A;  1PLR A;  5DAI A;  2HIK A;  5E0V A;  3P83 A;  2NTI C;  2ZVV A;  3U61 F;  3AIZ A;  3P91 A;  2IO4 A;  2HII B;  1W60 A;  2HIK B;  1RXM A;  3IFV A;  2ZVW A;  2IX2 A;  1GE8 A;  4RJF A;  1U76 A;  3LX2 A;  1IZ4 A;  2IZO C;  2ZVK A;  2IO4 B;  5E0U A;  3FDS D;  4TR6 A;  2IX2 B;  3G65 C;  3GGR B;  2ZVL A;  3U60 F;  4YHR A;  1SXJ F; 
#chains in the Genus database with same CATH homology
 4D2G A;  1IZ5 A;  1B77 A;  5DA7 A;  2ZVM A;  3GPM A;  4L60 A;  2Z0L A;  3U5Z F;  1YYP A;  3GGR A;  3VKX A;  3AIZ C;  1PLQ A;  2NTI B;  1T6L A;  3A1J C;  3AIX B;  3FDS C;  5B7O A;  1U7B A;  1CZD A;  5IY4 A;  3I2M X;  5HAC A;  2OD8 A;  3LX1 A;  2NTI A;  2HII C;  3AIX A;  3K4X A;  2HIK C;  1ISQ A;  3V62 B;  2IJX A;  5CFK A;  2IZO B;  5JNE D;  3TBL A;  3WGW A;  5AUJ A;  1UD9 A;  3HSL X;  3F1W A;  5IWD A;  3A1J B;  3V60 B;  1RWZ A;  3P87 A;  5H0T A;  3GPN A;  1DML A;  4L6P A;  1AXC A;  4HK1 A;  5IXA A;  2AWA A;  5A6D A;  4ZTD A;  2IX2 C;  1RXZ A;  3G65 B;  1VYJ A;  3A1J A;  5E0T A;  3GGR C;  3A2F B;  4CS5 A;  3HI8 A;  1UL1 A;  3V61 B;  1B8H A;  1VYM A;  2AVT A;  2HII A;  3G65 A;  1PLR A;  5DAI A;  2HIK A;  5E0V A;  3P83 A;  2NTI C;  2ZVV A;  3U61 F;  3AIZ A;  3P91 A;  2IO4 A;  2HII B;  1W60 A;  2HIK B;  1RXM A;  3IFV A;  2ZVW A;  2IX2 A;  1GE8 A;  4RJF A;  1U76 A;  3LX2 A;  1IZ4 A;  2IZO C;  2ZVK A;  2IO4 B;  5E0U A;  3FDS D;  4TR6 A;  2IX2 B;  3G65 C;  3GGR B;  2ZVL A;  3U60 F;  4YHR A;  1SXJ F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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