3K4XA

Eukaryotic sliding clamp pcna bound to dna
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
786
structure length
758
Chain Sequence
LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKFNLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein/dna
molecule keywords Proliferating cell nuclear antigen
publication title Analysis of the role of PCNA-DNA contacts during clamp loading.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 184
structure length 758
sequence length 786
ec nomenclature
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3k4xA02
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3k4xA01
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3k4xA03
2AWAA 2HIKB 4RJFA 1IZ5A 3HI8A 2IX2C 1T6LA 4D2GA 3AIZA 3P83A 3WGWA 3TBLA 2NTIA 4L60A 2IZOB 5JNED 1PLQA 1GE8A 5E0VA 5CFKA 3V62B 1SXJF 2ZVVA 2NTIB 3AIZC 1DMLA 3GGRC 3VKXA 3A1JC 1U7BA 3LX1A 1YYPA 3LX2A 2Z0LA 4YHRA 1UL1A 2HIKC 1W60A 5E0UA 3A2FB 1AXCA 3P91A 3GPMA 1U76A 4TR6A 5E0TA 1VYJA 3AIXA 3G65A 4CS5A 3K4XA 2NTIC 1ISQA 5HACA 3AIXB 3G65B 2IO4B 5B7OA 3U5ZF 2AVTA 5AUJA 1CZDA 3I2MX 3P87A 2ZVWA 3GPNA 2ZVMA 5DAIA 1VYMA 3FDSC 1PLRA 2IZOC 5H0TA 2OD8A 3V61B 2IX2A 2HIIB 1RXMA 2IO4A 1UD9A 5DA7A 5IXAA 3F1WA 2IX2B 3V60B 2ZVKA 3G65C 3U61F 1RWZA 1B8HA 3GGRA 3A1JA 5A6DA 3HSLX 5IY4A 2ZVLA 5IWDA 4HK1A 2HIIA 3GGRB 3A1JB 3U60F 1IZ4A 4ZTDA 3FDSD 4L6PA 1RXZA 2IJXA 2HIKA 1B77A 2HIIC 3IFVA
chains in the Genus database with same CATH superfamily
2AWAA 2HIKB 4RJFA 1IZ5A 3HI8A 2IX2C 1T6LA 4D2GA 3AIZA 3P83A 3WGWA 3TBLA 2NTIA 4L60A 2IZOB 5JNED 1PLQA 1GE8A 5E0VA 5CFKA 3V62B 1SXJF 2ZVVA 2NTIB 3AIZC 1DMLA 3GGRC 3VKXA 3A1JC 1U7BA 3LX1A 1YYPA 3LX2A 2Z0LA 4YHRA 1UL1A 2HIKC 1W60A 5E0UA 3A2FB 1AXCA 3P91A 3GPMA 1U76A 4TR6A 5E0TA 1VYJA 3AIXA 3G65A 4CS5A 3K4XA 2NTIC 1ISQA 5HACA 3AIXB 3G65B 2IO4B 5B7OA 3U5ZF 2AVTA 5AUJA 1CZDA 3I2MX 3P87A 2ZVWA 3GPNA 2ZVMA 5DAIA 1VYMA 3FDSC 1PLRA 2IZOC 5H0TA 2OD8A 3V61B 2IX2A 2HIIB 1RXMA 2IO4A 1UD9A 5DA7A 5IXAA 3F1WA 2IX2B 3V60B 2ZVKA 3G65C 3U61F 1RWZA 1B8HA 3GGRA 3A1JA 5A6DA 3HSLX 5IY4A 2ZVLA 5IWDA 4HK1A 2HIIA 3GGRB 3A1JB 3U60F 1IZ4A 4ZTDA 3FDSD 4L6PA 1RXZA 2IJXA 2HIKA 1B77A 2HIIC 3IFVA
chains in the Genus database with same CATH topology
2AWAA 2HIKB 4RJFA 1IZ5A 3HI8A 2IX2C 1T6LA 4D2GA 3AIZA 3P83A 3WGWA 3TBLA 2NTIA 4L60A 2IZOB 5JNED 1PLQA 1GE8A 5E0VA 5CFKA 3V62B 1SXJF 2ZVVA 2NTIB 3AIZC 1DMLA 3GGRC 3VKXA 3A1JC 1U7BA 3LX1A 1YYPA 3LX2A 2Z0LA 4YHRA 1UL1A 2HIKC 1W60A 5E0UA 3A2FB 1AXCA 3P91A 3GPMA 1U76A 4TR6A 5E0TA 1VYJA 3AIXA 3G65A 4CS5A 3K4XA 2NTIC 1ISQA 5HACA 3AIXB 3G65B 2IO4B 5B7OA 3U5ZF 2AVTA 5AUJA 1CZDA 3I2MX 3P87A 2ZVWA 3GPNA 2ZVMA 5DAIA 1VYMA 3FDSC 1PLRA 2IZOC 5H0TA 2OD8A 3V61B 2IX2A 2HIIB 1RXMA 2IO4A 1UD9A 5DA7A 5IXAA 3F1WA 2IX2B 3V60B 2ZVKA 3G65C 3U61F 1RWZA 1B8HA 3GGRA 3A1JA 5A6DA 3HSLX 5IY4A 2ZVLA 5IWDA 4HK1A 2HIIA 3GGRB 3A1JB 3U60F 1IZ4A 4ZTDA 3FDSD 4L6PA 1RXZA 2IJXA 2HIKA 1B77A 2HIIC 3IFVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AWA A;  2HIK B;  4RJF A;  1IZ5 A;  3HI8 A;  2IX2 C;  1T6L A;  4D2G A;  3AIZ A;  3P83 A;  3WGW A;  3TBL A;  2NTI A;  4L60 A;  2IZO B;  5JNE D;  1PLQ A;  1GE8 A;  5E0V A;  5CFK A;  3V62 B;  1SXJ F;  2ZVV A;  2NTI B;  3AIZ C;  1DML A;  3GGR C;  3VKX A;  3A1J C;  1U7B A;  3LX1 A;  1YYP A;  3LX2 A;  2Z0L A;  4YHR A;  1UL1 A;  2HIK C;  1W60 A;  5E0U A;  3A2F B;  1AXC A;  3P91 A;  3GPM A;  1U76 A;  4TR6 A;  5E0T A;  1VYJ A;  3AIX A;  3G65 A;  4CS5 A;  3K4X A;  2NTI C;  1ISQ A;  5HAC A;  3AIX B;  3G65 B;  2IO4 B;  5B7O A;  3U5Z F;  2AVT A;  5AUJ A;  1CZD A;  3I2M X;  3P87 A;  2ZVW A;  3GPN A;  2ZVM A;  5DAI A;  1VYM A;  3FDS C;  1PLR A;  2IZO C;  5H0T A;  2OD8 A;  3V61 B;  2IX2 A;  2HII B;  1RXM A;  2IO4 A;  1UD9 A;  5DA7 A;  5IXA A;  3F1W A;  2IX2 B;  3V60 B;  2ZVK A;  3G65 C;  3U61 F;  1RWZ A;  1B8H A;  3GGR A;  3A1J A;  5A6D A;  3HSL X;  5IY4 A;  2ZVL A;  5IWD A;  4HK1 A;  2HII A;  3GGR B;  3A1J B;  3U60 F;  1IZ4 A;  4ZTD A;  3FDS D;  4L6P A;  1RXZ A;  2IJX A;  2HIK A;  1B77 A;  2HII C;  3IFV A; 
#chains in the Genus database with same CATH topology
 2AWA A;  2HIK B;  4RJF A;  1IZ5 A;  3HI8 A;  2IX2 C;  1T6L A;  4D2G A;  3AIZ A;  3P83 A;  3WGW A;  3TBL A;  2NTI A;  4L60 A;  2IZO B;  5JNE D;  1PLQ A;  1GE8 A;  5E0V A;  5CFK A;  3V62 B;  1SXJ F;  2ZVV A;  2NTI B;  3AIZ C;  1DML A;  3GGR C;  3VKX A;  3A1J C;  1U7B A;  3LX1 A;  1YYP A;  3LX2 A;  2Z0L A;  4YHR A;  1UL1 A;  2HIK C;  1W60 A;  5E0U A;  3A2F B;  1AXC A;  3P91 A;  3GPM A;  1U76 A;  4TR6 A;  5E0T A;  1VYJ A;  3AIX A;  3G65 A;  4CS5 A;  3K4X A;  2NTI C;  1ISQ A;  5HAC A;  3AIX B;  3G65 B;  2IO4 B;  5B7O A;  3U5Z F;  2AVT A;  5AUJ A;  1CZD A;  3I2M X;  3P87 A;  2ZVW A;  3GPN A;  2ZVM A;  5DAI A;  1VYM A;  3FDS C;  1PLR A;  2IZO C;  5H0T A;  2OD8 A;  3V61 B;  2IX2 A;  2HII B;  1RXM A;  2IO4 A;  1UD9 A;  5DA7 A;  5IXA A;  3F1W A;  2IX2 B;  3V60 B;  2ZVK A;  3G65 C;  3U61 F;  1RWZ A;  1B8H A;  3GGR A;  3A1J A;  5A6D A;  3HSL X;  5IY4 A;  2ZVL A;  5IWD A;  4HK1 A;  2HII A;  3GGR B;  3A1J B;  3U60 F;  1IZ4 A;  4ZTD A;  3FDS D;  4L6P A;  1RXZ A;  2IJX A;  2HIK A;  1B77 A;  2HII C;  3IFV A; 
#chains in the Genus database with same CATH homology
 2AWA A;  2HIK B;  4RJF A;  1IZ5 A;  3HI8 A;  2IX2 C;  1T6L A;  4D2G A;  3AIZ A;  3P83 A;  3WGW A;  3TBL A;  2NTI A;  4L60 A;  2IZO B;  5JNE D;  1PLQ A;  1GE8 A;  5E0V A;  5CFK A;  3V62 B;  1SXJ F;  2ZVV A;  2NTI B;  3AIZ C;  1DML A;  3GGR C;  3VKX A;  3A1J C;  1U7B A;  3LX1 A;  1YYP A;  3LX2 A;  2Z0L A;  4YHR A;  1UL1 A;  2HIK C;  1W60 A;  5E0U A;  3A2F B;  1AXC A;  3P91 A;  3GPM A;  1U76 A;  4TR6 A;  5E0T A;  1VYJ A;  3AIX A;  3G65 A;  4CS5 A;  3K4X A;  2NTI C;  1ISQ A;  5HAC A;  3AIX B;  3G65 B;  2IO4 B;  5B7O A;  3U5Z F;  2AVT A;  5AUJ A;  1CZD A;  3I2M X;  3P87 A;  2ZVW A;  3GPN A;  2ZVM A;  5DAI A;  1VYM A;  3FDS C;  1PLR A;  2IZO C;  5H0T A;  2OD8 A;  3V61 B;  2IX2 A;  2HII B;  1RXM A;  2IO4 A;  1UD9 A;  5DA7 A;  5IXA A;  3F1W A;  2IX2 B;  3V60 B;  2ZVK A;  3G65 C;  3U61 F;  1RWZ A;  1B8H A;  3GGR A;  3A1J A;  5A6D A;  3HSL X;  5IY4 A;  2ZVL A;  5IWD A;  4HK1 A;  2HII A;  3GGR B;  3A1J B;  3U60 F;  1IZ4 A;  4ZTD A;  3FDS D;  4L6P A;  1RXZ A;  2IJX A;  2HIK A;  1B77 A;  2HII C;  3IFV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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