3LX2A

Crystal structure analysis of pcna from thermococcus kodakaraensis tk0582
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
247
structure length
247
Chain Sequence
TFEIVFDSAREFESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVESEEAIAFDLKRFLKVLKLARSRDTLVLRKGGENFLEVGLLGDENTWFKLPLIDANTPEIEIPSLPWTVKAVVLAGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords DNA polymerase sliding clamp 2
publication title Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis.
pubmed doi rcsb
source organism Thermococcus kodakarensis
total genus 55
structure length 247
sequence length 247
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3lx2A00
3P91A 3FDSC 3V62B 1UD9A 5IXAA 1IZ4A 4CS5A 2ZVKA 3A1JC 3U60F 5HACA 4L6PA 1RWZA 3FDSD 3GGRA 3AIXA 1B8HA 4RJFA 3P87A 3GGRC 3F1WA 4D2GA 2AWAA 3TBLA 4HK1A 3A1JB 5AUJA 1AXCA 1RXZA 5H0TA 5A6DA 3LX1A 3U61F 3VKXA 1GE8A 1YYPA 4L60A 3HI8A 3V61B 2HIKA 3GGRB 3AIXB 3IFVA 3AIZA 2NTIA 1PLRA 3HSLX 2HIIA 3G65A 2IO4B 2HIKC 3AIZC 3I2MX 2HIIC 3G65C 2IX2A 1VYJA 5DA7A 2Z0LA 3WGWA 4ZTDA 1B77A 2IX2C 5IWDA 5DAIA 5IY4A 3K4XA 4YHRA 5JNED 1W60A 2AVTA 1UL1A 3V60B 1CZDA 5CFKA 2HIKB 2HIIB 3G65B 1SXJF 1IZ5A 3U5ZF 2IX2B 2NTIC 2ZVWA 3GPMA 2IZOC 3A1JA 1PLQA 5E0TA 5E0VA 1ISQA 1RXMA 1U7BA 2ZVMA 3GPNA 4TR6A 2ZVLA 2ZVVA 2IJXA 5B7OA 3P83A 1T6LA 5E0UA 2NTIB 1U76A 3LX2A 2IO4A 2IZOB 3A2FB 1VYMA 2OD8A 1DMLA
chains in the Genus database with same CATH superfamily
3P91A 3FDSC 3V62B 1UD9A 5IXAA 1IZ4A 4CS5A 2ZVKA 3A1JC 3U60F 5HACA 4L6PA 1RWZA 3FDSD 3GGRA 3AIXA 1B8HA 4RJFA 3P87A 3GGRC 3F1WA 4D2GA 2AWAA 3TBLA 4HK1A 3A1JB 5AUJA 1AXCA 1RXZA 5H0TA 5A6DA 3LX1A 3U61F 3VKXA 1GE8A 1YYPA 4L60A 3HI8A 3V61B 2HIKA 3GGRB 3AIXB 3IFVA 3AIZA 2NTIA 1PLRA 3HSLX 2HIIA 3G65A 2IO4B 2HIKC 3AIZC 3I2MX 2HIIC 3G65C 2IX2A 1VYJA 5DA7A 2Z0LA 3WGWA 4ZTDA 1B77A 2IX2C 5IWDA 5DAIA 5IY4A 3K4XA 4YHRA 5JNED 1W60A 2AVTA 1UL1A 3V60B 1CZDA 5CFKA 2HIKB 2HIIB 3G65B 1SXJF 1IZ5A 3U5ZF 2IX2B 2NTIC 2ZVWA 3GPMA 2IZOC 3A1JA 1PLQA 5E0TA 5E0VA 1ISQA 1RXMA 1U7BA 2ZVMA 3GPNA 4TR6A 2ZVLA 2ZVVA 2IJXA 5B7OA 3P83A 1T6LA 5E0UA 2NTIB 1U76A 3LX2A 2IO4A 2IZOB 3A2FB 1VYMA 2OD8A 1DMLA
chains in the Genus database with same CATH topology
3P91A 3FDSC 3V62B 1UD9A 5IXAA 1IZ4A 4CS5A 2ZVKA 3A1JC 3U60F 5HACA 4L6PA 1RWZA 3FDSD 3GGRA 3AIXA 1B8HA 4RJFA 3P87A 3GGRC 3F1WA 4D2GA 2AWAA 3TBLA 4HK1A 3A1JB 5AUJA 1AXCA 1RXZA 5H0TA 5A6DA 3LX1A 3U61F 3VKXA 1GE8A 1YYPA 4L60A 3HI8A 3V61B 2HIKA 3GGRB 3AIXB 3IFVA 3AIZA 2NTIA 1PLRA 3HSLX 2HIIA 3G65A 2IO4B 2HIKC 3AIZC 3I2MX 2HIIC 3G65C 2IX2A 1VYJA 5DA7A 2Z0LA 3WGWA 4ZTDA 1B77A 2IX2C 5IWDA 5DAIA 5IY4A 3K4XA 4YHRA 5JNED 1W60A 2AVTA 1UL1A 3V60B 1CZDA 5CFKA 2HIKB 2HIIB 3G65B 1SXJF 1IZ5A 3U5ZF 2IX2B 2NTIC 2ZVWA 3GPMA 2IZOC 3A1JA 1PLQA 5E0TA 5E0VA 1ISQA 1RXMA 1U7BA 2ZVMA 3GPNA 4TR6A 2ZVLA 2ZVVA 2IJXA 5B7OA 3P83A 1T6LA 5E0UA 2NTIB 1U76A 3LX2A 2IO4A 2IZOB 3A2FB 1VYMA 2OD8A 1DMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P91 A;  3FDS C;  3V62 B;  1UD9 A;  5IXA A;  1IZ4 A;  4CS5 A;  2ZVK A;  3A1J C;  3U60 F;  5HAC A;  4L6P A;  1RWZ A;  3FDS D;  3GGR A;  3AIX A;  1B8H A;  4RJF A;  3P87 A;  3GGR C;  3F1W A;  4D2G A;  2AWA A;  3TBL A;  4HK1 A;  3A1J B;  5AUJ A;  1AXC A;  1RXZ A;  5H0T A;  5A6D A;  3LX1 A;  3U61 F;  3VKX A;  1GE8 A;  1YYP A;  4L60 A;  3HI8 A;  3V61 B;  2HIK A;  3GGR B;  3AIX B;  3IFV A;  3AIZ A;  2NTI A;  1PLR A;  3HSL X;  2HII A;  3G65 A;  2IO4 B;  2HIK C;  3AIZ C;  3I2M X;  2HII C;  3G65 C;  2IX2 A;  1VYJ A;  5DA7 A;  2Z0L A;  3WGW A;  4ZTD A;  1B77 A;  2IX2 C;  5IWD A;  5DAI A;  5IY4 A;  3K4X A;  4YHR A;  5JNE D;  1W60 A;  2AVT A;  1UL1 A;  3V60 B;  1CZD A;  5CFK A;  2HIK B;  2HII B;  3G65 B;  1SXJ F;  1IZ5 A;  3U5Z F;  2IX2 B;  2NTI C;  2ZVW A;  3GPM A;  2IZO C;  3A1J A;  1PLQ A;  5E0T A;  5E0V A;  1ISQ A;  1RXM A;  1U7B A;  2ZVM A;  3GPN A;  4TR6 A;  2ZVL A;  2ZVV A;  2IJX A;  5B7O A;  3P83 A;  1T6L A;  5E0U A;  2NTI B;  1U76 A;  3LX2 A;  2IO4 A;  2IZO B;  3A2F B;  1VYM A;  2OD8 A;  1DML A; 
#chains in the Genus database with same CATH topology
 3P91 A;  3FDS C;  3V62 B;  1UD9 A;  5IXA A;  1IZ4 A;  4CS5 A;  2ZVK A;  3A1J C;  3U60 F;  5HAC A;  4L6P A;  1RWZ A;  3FDS D;  3GGR A;  3AIX A;  1B8H A;  4RJF A;  3P87 A;  3GGR C;  3F1W A;  4D2G A;  2AWA A;  3TBL A;  4HK1 A;  3A1J B;  5AUJ A;  1AXC A;  1RXZ A;  5H0T A;  5A6D A;  3LX1 A;  3U61 F;  3VKX A;  1GE8 A;  1YYP A;  4L60 A;  3HI8 A;  3V61 B;  2HIK A;  3GGR B;  3AIX B;  3IFV A;  3AIZ A;  2NTI A;  1PLR A;  3HSL X;  2HII A;  3G65 A;  2IO4 B;  2HIK C;  3AIZ C;  3I2M X;  2HII C;  3G65 C;  2IX2 A;  1VYJ A;  5DA7 A;  2Z0L A;  3WGW A;  4ZTD A;  1B77 A;  2IX2 C;  5IWD A;  5DAI A;  5IY4 A;  3K4X A;  4YHR A;  5JNE D;  1W60 A;  2AVT A;  1UL1 A;  3V60 B;  1CZD A;  5CFK A;  2HIK B;  2HII B;  3G65 B;  1SXJ F;  1IZ5 A;  3U5Z F;  2IX2 B;  2NTI C;  2ZVW A;  3GPM A;  2IZO C;  3A1J A;  1PLQ A;  5E0T A;  5E0V A;  1ISQ A;  1RXM A;  1U7B A;  2ZVM A;  3GPN A;  4TR6 A;  2ZVL A;  2ZVV A;  2IJX A;  5B7O A;  3P83 A;  1T6L A;  5E0U A;  2NTI B;  1U76 A;  3LX2 A;  2IO4 A;  2IZO B;  3A2F B;  1VYM A;  2OD8 A;  1DML A; 
#chains in the Genus database with same CATH homology
 3P91 A;  3FDS C;  3V62 B;  1UD9 A;  5IXA A;  1IZ4 A;  4CS5 A;  2ZVK A;  3A1J C;  3U60 F;  5HAC A;  4L6P A;  1RWZ A;  3FDS D;  3GGR A;  3AIX A;  1B8H A;  4RJF A;  3P87 A;  3GGR C;  3F1W A;  4D2G A;  2AWA A;  3TBL A;  4HK1 A;  3A1J B;  5AUJ A;  1AXC A;  1RXZ A;  5H0T A;  5A6D A;  3LX1 A;  3U61 F;  3VKX A;  1GE8 A;  1YYP A;  4L60 A;  3HI8 A;  3V61 B;  2HIK A;  3GGR B;  3AIX B;  3IFV A;  3AIZ A;  2NTI A;  1PLR A;  3HSL X;  2HII A;  3G65 A;  2IO4 B;  2HIK C;  3AIZ C;  3I2M X;  2HII C;  3G65 C;  2IX2 A;  1VYJ A;  5DA7 A;  2Z0L A;  3WGW A;  4ZTD A;  1B77 A;  2IX2 C;  5IWD A;  5DAI A;  5IY4 A;  3K4X A;  4YHR A;  5JNE D;  1W60 A;  2AVT A;  1UL1 A;  3V60 B;  1CZD A;  5CFK A;  2HIK B;  2HII B;  3G65 B;  1SXJ F;  1IZ5 A;  3U5Z F;  2IX2 B;  2NTI C;  2ZVW A;  3GPM A;  2IZO C;  3A1J A;  1PLQ A;  5E0T A;  5E0V A;  1ISQ A;  1RXM A;  1U7B A;  2ZVM A;  3GPN A;  4TR6 A;  2ZVL A;  2ZVV A;  2IJX A;  5B7O A;  3P83 A;  1T6L A;  5E0U A;  2NTI B;  1U76 A;  3LX2 A;  2IO4 A;  2IZO B;  3A2F B;  1VYM A;  2OD8 A;  1DML A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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