3P83A

Structure of the pcna:rnase hii complex from archaeoglobus fulgidus.
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
244
structure length
244
Chain Sequence
MIDVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna binding protein
molecule keywords DNA polymerase sliding clamp
publication title PCNA directs type 2 RNase H activity on DNA replication and repair substrates.
pubmed doi rcsb
source organism Archaeoglobus fulgidus
total genus 63
structure length 244
sequence length 244
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3p83A00
3FDSD 3U61F 2IO4A 5H0TA 1PLRA 1U76A 3F1WA 1IZ5A 3GGRA 4D2GA 1T6LA 3V61B 3AIXA 3A1JB 5AUJA 2OD8A 3K4XA 1UD9A 5A6DA 2IO4B 1B8HA 5IY4A 3P91A 3WGWA 3GGRB 3I2MX 3AIXB 2IX2A 1ISQA 5IWDA 1B77A 2IX2C 2ZVVA 3V60B 5IXAA 5DAIA 1VYMA 2IX2B 4L60A 2ZVMA 1GE8A 5E0VA 1U7BA 3A1JC 3V62B 2HIIA 3U60F 5HACA 3GGRC 1UL1A 3A2FB 1CZDA 1AXCA 2HIIB 2IZOB 5B7OA 4TR6A 2HIKB 3LX2A 3IFVA 2AWAA 5DA7A 3AIZA 2ZVWA 5E0UA 1DMLA 2NTIA 3VKXA 2Z0LA 2HIIC 2NTIB 1VYJA 2IZOC 2HIKA 1YYPA 3HSLX 2ZVLA 1SXJF 2IJXA 2HIKC 3GPNA 3U5ZF 3G65A 4HK1A 3G65C 3FDSC 1RWZA 4CS5A 1RXMA 3AIZC 3G65B 2ZVKA 5CFKA 3P87A 4ZTDA 1PLQA 3TBLA 2NTIC 5JNED 3GPMA 1RXZA 3P83A 1IZ4A 4YHRA 3HI8A 2AVTA 3LX1A 4RJFA 5E0TA 1W60A 3A1JA 4L6PA
chains in the Genus database with same CATH superfamily
3FDSD 3U61F 2IO4A 5H0TA 1PLRA 1U76A 3F1WA 1IZ5A 3GGRA 4D2GA 1T6LA 3V61B 3AIXA 3A1JB 5AUJA 2OD8A 3K4XA 1UD9A 5A6DA 2IO4B 1B8HA 5IY4A 3P91A 3WGWA 3GGRB 3I2MX 3AIXB 2IX2A 1ISQA 5IWDA 1B77A 2IX2C 2ZVVA 3V60B 5IXAA 5DAIA 1VYMA 2IX2B 4L60A 2ZVMA 1GE8A 5E0VA 1U7BA 3A1JC 3V62B 2HIIA 3U60F 5HACA 3GGRC 1UL1A 3A2FB 1CZDA 1AXCA 2HIIB 2IZOB 5B7OA 4TR6A 2HIKB 3LX2A 3IFVA 2AWAA 5DA7A 3AIZA 2ZVWA 5E0UA 1DMLA 2NTIA 3VKXA 2Z0LA 2HIIC 2NTIB 1VYJA 2IZOC 2HIKA 1YYPA 3HSLX 2ZVLA 1SXJF 2IJXA 2HIKC 3GPNA 3U5ZF 3G65A 4HK1A 3G65C 3FDSC 1RWZA 4CS5A 1RXMA 3AIZC 3G65B 2ZVKA 5CFKA 3P87A 4ZTDA 1PLQA 3TBLA 2NTIC 5JNED 3GPMA 1RXZA 3P83A 1IZ4A 4YHRA 3HI8A 2AVTA 3LX1A 4RJFA 5E0TA 1W60A 3A1JA 4L6PA
chains in the Genus database with same CATH topology
3FDSD 3U61F 2IO4A 5H0TA 1PLRA 1U76A 3F1WA 1IZ5A 3GGRA 4D2GA 1T6LA 3V61B 3AIXA 3A1JB 5AUJA 2OD8A 3K4XA 1UD9A 5A6DA 2IO4B 1B8HA 5IY4A 3P91A 3WGWA 3GGRB 3I2MX 3AIXB 2IX2A 1ISQA 5IWDA 1B77A 2IX2C 2ZVVA 3V60B 5IXAA 5DAIA 1VYMA 2IX2B 4L60A 2ZVMA 1GE8A 5E0VA 1U7BA 3A1JC 3V62B 2HIIA 3U60F 5HACA 3GGRC 1UL1A 3A2FB 1CZDA 1AXCA 2HIIB 2IZOB 5B7OA 4TR6A 2HIKB 3LX2A 3IFVA 2AWAA 5DA7A 3AIZA 2ZVWA 5E0UA 1DMLA 2NTIA 3VKXA 2Z0LA 2HIIC 2NTIB 1VYJA 2IZOC 2HIKA 1YYPA 3HSLX 2ZVLA 1SXJF 2IJXA 2HIKC 3GPNA 3U5ZF 3G65A 4HK1A 3G65C 3FDSC 1RWZA 4CS5A 1RXMA 3AIZC 3G65B 2ZVKA 5CFKA 3P87A 4ZTDA 1PLQA 3TBLA 2NTIC 5JNED 3GPMA 1RXZA 3P83A 1IZ4A 4YHRA 3HI8A 2AVTA 3LX1A 4RJFA 5E0TA 1W60A 3A1JA 4L6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FDS D;  3U61 F;  2IO4 A;  5H0T A;  1PLR A;  1U76 A;  3F1W A;  1IZ5 A;  3GGR A;  4D2G A;  1T6L A;  3V61 B;  3AIX A;  3A1J B;  5AUJ A;  2OD8 A;  3K4X A;  1UD9 A;  5A6D A;  2IO4 B;  1B8H A;  5IY4 A;  3P91 A;  3WGW A;  3GGR B;  3I2M X;  3AIX B;  2IX2 A;  1ISQ A;  5IWD A;  1B77 A;  2IX2 C;  2ZVV A;  3V60 B;  5IXA A;  5DAI A;  1VYM A;  2IX2 B;  4L60 A;  2ZVM A;  1GE8 A;  5E0V A;  1U7B A;  3A1J C;  3V62 B;  2HII A;  3U60 F;  5HAC A;  3GGR C;  1UL1 A;  3A2F B;  1CZD A;  1AXC A;  2HII B;  2IZO B;  5B7O A;  4TR6 A;  2HIK B;  3LX2 A;  3IFV A;  2AWA A;  5DA7 A;  3AIZ A;  2ZVW A;  5E0U A;  1DML A;  2NTI A;  3VKX A;  2Z0L A;  2HII C;  2NTI B;  1VYJ A;  2IZO C;  2HIK A;  1YYP A;  3HSL X;  2ZVL A;  1SXJ F;  2IJX A;  2HIK C;  3GPN A;  3U5Z F;  3G65 A;  4HK1 A;  3G65 C;  3FDS C;  1RWZ A;  4CS5 A;  1RXM A;  3AIZ C;  3G65 B;  2ZVK A;  5CFK A;  3P87 A;  4ZTD A;  1PLQ A;  3TBL A;  2NTI C;  5JNE D;  3GPM A;  1RXZ A;  3P83 A;  1IZ4 A;  4YHR A;  3HI8 A;  2AVT A;  3LX1 A;  4RJF A;  5E0T A;  1W60 A;  3A1J A;  4L6P A; 
#chains in the Genus database with same CATH topology
 3FDS D;  3U61 F;  2IO4 A;  5H0T A;  1PLR A;  1U76 A;  3F1W A;  1IZ5 A;  3GGR A;  4D2G A;  1T6L A;  3V61 B;  3AIX A;  3A1J B;  5AUJ A;  2OD8 A;  3K4X A;  1UD9 A;  5A6D A;  2IO4 B;  1B8H A;  5IY4 A;  3P91 A;  3WGW A;  3GGR B;  3I2M X;  3AIX B;  2IX2 A;  1ISQ A;  5IWD A;  1B77 A;  2IX2 C;  2ZVV A;  3V60 B;  5IXA A;  5DAI A;  1VYM A;  2IX2 B;  4L60 A;  2ZVM A;  1GE8 A;  5E0V A;  1U7B A;  3A1J C;  3V62 B;  2HII A;  3U60 F;  5HAC A;  3GGR C;  1UL1 A;  3A2F B;  1CZD A;  1AXC A;  2HII B;  2IZO B;  5B7O A;  4TR6 A;  2HIK B;  3LX2 A;  3IFV A;  2AWA A;  5DA7 A;  3AIZ A;  2ZVW A;  5E0U A;  1DML A;  2NTI A;  3VKX A;  2Z0L A;  2HII C;  2NTI B;  1VYJ A;  2IZO C;  2HIK A;  1YYP A;  3HSL X;  2ZVL A;  1SXJ F;  2IJX A;  2HIK C;  3GPN A;  3U5Z F;  3G65 A;  4HK1 A;  3G65 C;  3FDS C;  1RWZ A;  4CS5 A;  1RXM A;  3AIZ C;  3G65 B;  2ZVK A;  5CFK A;  3P87 A;  4ZTD A;  1PLQ A;  3TBL A;  2NTI C;  5JNE D;  3GPM A;  1RXZ A;  3P83 A;  1IZ4 A;  4YHR A;  3HI8 A;  2AVT A;  3LX1 A;  4RJF A;  5E0T A;  1W60 A;  3A1J A;  4L6P A; 
#chains in the Genus database with same CATH homology
 3FDS D;  3U61 F;  2IO4 A;  5H0T A;  1PLR A;  1U76 A;  3F1W A;  1IZ5 A;  3GGR A;  4D2G A;  1T6L A;  3V61 B;  3AIX A;  3A1J B;  5AUJ A;  2OD8 A;  3K4X A;  1UD9 A;  5A6D A;  2IO4 B;  1B8H A;  5IY4 A;  3P91 A;  3WGW A;  3GGR B;  3I2M X;  3AIX B;  2IX2 A;  1ISQ A;  5IWD A;  1B77 A;  2IX2 C;  2ZVV A;  3V60 B;  5IXA A;  5DAI A;  1VYM A;  2IX2 B;  4L60 A;  2ZVM A;  1GE8 A;  5E0V A;  1U7B A;  3A1J C;  3V62 B;  2HII A;  3U60 F;  5HAC A;  3GGR C;  1UL1 A;  3A2F B;  1CZD A;  1AXC A;  2HII B;  2IZO B;  5B7O A;  4TR6 A;  2HIK B;  3LX2 A;  3IFV A;  2AWA A;  5DA7 A;  3AIZ A;  2ZVW A;  5E0U A;  1DML A;  2NTI A;  3VKX A;  2Z0L A;  2HII C;  2NTI B;  1VYJ A;  2IZO C;  2HIK A;  1YYP A;  3HSL X;  2ZVL A;  1SXJ F;  2IJX A;  2HIK C;  3GPN A;  3U5Z F;  3G65 A;  4HK1 A;  3G65 C;  3FDS C;  1RWZ A;  4CS5 A;  1RXM A;  3AIZ C;  3G65 B;  2ZVK A;  5CFK A;  3P87 A;  4ZTD A;  1PLQ A;  3TBL A;  2NTI C;  5JNE D;  3GPM A;  1RXZ A;  3P83 A;  1IZ4 A;  4YHR A;  3HI8 A;  2AVT A;  3LX1 A;  4RJF A;  5E0T A;  1W60 A;  3A1J A;  4L6P A; 
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similar chains in the Genus database (?% sequence similarity)
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