3P83A

Structure of the pcna:rnase hii complex from archaeoglobus fulgidus.
Total Genus 63
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
244
structure length
244
Chain Sequence
MIDVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIES
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase/dna binding protein
molecule keywords DNA polymerase sliding clamp
publication title PCNA directs type 2 RNase H activity on DNA replication and repair substrates.
pubmed doi rcsb
source organism Archaeoglobus fulgidus
total genus 63
structure length 244
sequence length 244
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3p83A00
2ZVKA 1AXCA 3G65B 3HSLX 3TBLA 1U7BA 5E0UA 5DA7A 3G65C 4RJFA 2AWAA 1RXMA 2AVTA 5AUJA 4CS5A 1GE8A 2IZOB 2ZVMA 3A2FB 4YHRA 2IZOC 1VYJA 2IX2A 2NTIC 3HI8A 2OD8A 5CFKA 1IZ5A 3G65A 5JNED 1PLRA 1B77A 3AIZC 5B7OA 5A6DA 1YYPA 2NTIA 3WGWA 4HK1A 3IFVA 5DAIA 1PLQA 1DMLA 2ZVLA 2IO4A 5E0TA 3VKXA 3AIZA 1T6LA 3U5ZF 3V61B 4L6PA 2HIIB 3AIXB 1CZDA 2HIIC 5H0TA 3I2MX 3U60F 2HIKB 2Z0LA 3GGRB 4D2GA 2HIKC 4L60A 3P83A 3GGRC 3LX1A 3LX2A 4ZTDA 1ISQA 3A1JB 3FDSD 3FDSC 3A1JC 1RXZA 5IY4A 3P91A 5IXAA 1W60A 1IZ4A 3GPNA 2IX2B 5HACA 2IX2C 3A1JA 3V62B 1B8HA 1VYMA 2NTIB 2HIIA 3GPMA 5IWDA 3AIXA 1U76A 1UD9A 2ZVVA 2IJXA 3P87A 1RWZA 3K4XA 5E0VA 1SXJF 1UL1A 2HIKA 2IO4B 3U61F 4TR6A 3GGRA 3V60B 2ZVWA 3F1WA
chains in the Genus database with same CATH superfamily
2ZVKA 1AXCA 3G65B 3HSLX 3TBLA 1U7BA 5E0UA 5DA7A 3G65C 4RJFA 2AWAA 1RXMA 2AVTA 5AUJA 4CS5A 1GE8A 2IZOB 2ZVMA 3A2FB 4YHRA 2IZOC 1VYJA 2IX2A 2NTIC 3HI8A 2OD8A 5CFKA 1IZ5A 3G65A 5JNED 1PLRA 1B77A 3AIZC 5B7OA 5A6DA 1YYPA 2NTIA 3WGWA 4HK1A 3IFVA 5DAIA 1PLQA 1DMLA 2ZVLA 2IO4A 5E0TA 3VKXA 3AIZA 1T6LA 3U5ZF 3V61B 4L6PA 2HIIB 3AIXB 1CZDA 2HIIC 5H0TA 3I2MX 3U60F 2HIKB 2Z0LA 3GGRB 4D2GA 2HIKC 4L60A 3P83A 3GGRC 3LX1A 3LX2A 4ZTDA 1ISQA 3A1JB 3FDSD 3FDSC 3A1JC 1RXZA 5IY4A 3P91A 5IXAA 1W60A 1IZ4A 3GPNA 2IX2B 5HACA 2IX2C 3A1JA 3V62B 1B8HA 1VYMA 2NTIB 2HIIA 3GPMA 5IWDA 3AIXA 1U76A 1UD9A 2ZVVA 2IJXA 3P87A 1RWZA 3K4XA 5E0VA 1SXJF 1UL1A 2HIKA 2IO4B 3U61F 4TR6A 3GGRA 3V60B 2ZVWA 3F1WA
chains in the Genus database with same CATH topology
2ZVKA 1AXCA 3G65B 3HSLX 3TBLA 1U7BA 5E0UA 5DA7A 3G65C 4RJFA 2AWAA 1RXMA 2AVTA 5AUJA 4CS5A 1GE8A 2IZOB 2ZVMA 3A2FB 4YHRA 2IZOC 1VYJA 2IX2A 2NTIC 3HI8A 2OD8A 5CFKA 1IZ5A 3G65A 5JNED 1PLRA 1B77A 3AIZC 5B7OA 5A6DA 1YYPA 2NTIA 3WGWA 4HK1A 3IFVA 5DAIA 1PLQA 1DMLA 2ZVLA 2IO4A 5E0TA 3VKXA 3AIZA 1T6LA 3U5ZF 3V61B 4L6PA 2HIIB 3AIXB 1CZDA 2HIIC 5H0TA 3I2MX 3U60F 2HIKB 2Z0LA 3GGRB 4D2GA 2HIKC 4L60A 3P83A 3GGRC 3LX1A 3LX2A 4ZTDA 1ISQA 3A1JB 3FDSD 3FDSC 3A1JC 1RXZA 5IY4A 3P91A 5IXAA 1W60A 1IZ4A 3GPNA 2IX2B 5HACA 2IX2C 3A1JA 3V62B 1B8HA 1VYMA 2NTIB 2HIIA 3GPMA 5IWDA 3AIXA 1U76A 1UD9A 2ZVVA 2IJXA 3P87A 1RWZA 3K4XA 5E0VA 1SXJF 1UL1A 2HIKA 2IO4B 3U61F 4TR6A 3GGRA 3V60B 2ZVWA 3F1WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZVK A;  1AXC A;  3G65 B;  3HSL X;  3TBL A;  1U7B A;  5E0U A;  5DA7 A;  3G65 C;  4RJF A;  2AWA A;  1RXM A;  2AVT A;  5AUJ A;  4CS5 A;  1GE8 A;  2IZO B;  2ZVM A;  3A2F B;  4YHR A;  2IZO C;  1VYJ A;  2IX2 A;  2NTI C;  3HI8 A;  2OD8 A;  5CFK A;  1IZ5 A;  3G65 A;  5JNE D;  1PLR A;  1B77 A;  3AIZ C;  5B7O A;  5A6D A;  1YYP A;  2NTI A;  3WGW A;  4HK1 A;  3IFV A;  5DAI A;  1PLQ A;  1DML A;  2ZVL A;  2IO4 A;  5E0T A;  3VKX A;  3AIZ A;  1T6L A;  3U5Z F;  3V61 B;  4L6P A;  2HII B;  3AIX B;  1CZD A;  2HII C;  5H0T A;  3I2M X;  3U60 F;  2HIK B;  2Z0L A;  3GGR B;  4D2G A;  2HIK C;  4L60 A;  3P83 A;  3GGR C;  3LX1 A;  3LX2 A;  4ZTD A;  1ISQ A;  3A1J B;  3FDS D;  3FDS C;  3A1J C;  1RXZ A;  5IY4 A;  3P91 A;  5IXA A;  1W60 A;  1IZ4 A;  3GPN A;  2IX2 B;  5HAC A;  2IX2 C;  3A1J A;  3V62 B;  1B8H A;  1VYM A;  2NTI B;  2HII A;  3GPM A;  5IWD A;  3AIX A;  1U76 A;  1UD9 A;  2ZVV A;  2IJX A;  3P87 A;  1RWZ A;  3K4X A;  5E0V A;  1SXJ F;  1UL1 A;  2HIK A;  2IO4 B;  3U61 F;  4TR6 A;  3GGR A;  3V60 B;  2ZVW A;  3F1W A; 
#chains in the Genus database with same CATH topology
 2ZVK A;  1AXC A;  3G65 B;  3HSL X;  3TBL A;  1U7B A;  5E0U A;  5DA7 A;  3G65 C;  4RJF A;  2AWA A;  1RXM A;  2AVT A;  5AUJ A;  4CS5 A;  1GE8 A;  2IZO B;  2ZVM A;  3A2F B;  4YHR A;  2IZO C;  1VYJ A;  2IX2 A;  2NTI C;  3HI8 A;  2OD8 A;  5CFK A;  1IZ5 A;  3G65 A;  5JNE D;  1PLR A;  1B77 A;  3AIZ C;  5B7O A;  5A6D A;  1YYP A;  2NTI A;  3WGW A;  4HK1 A;  3IFV A;  5DAI A;  1PLQ A;  1DML A;  2ZVL A;  2IO4 A;  5E0T A;  3VKX A;  3AIZ A;  1T6L A;  3U5Z F;  3V61 B;  4L6P A;  2HII B;  3AIX B;  1CZD A;  2HII C;  5H0T A;  3I2M X;  3U60 F;  2HIK B;  2Z0L A;  3GGR B;  4D2G A;  2HIK C;  4L60 A;  3P83 A;  3GGR C;  3LX1 A;  3LX2 A;  4ZTD A;  1ISQ A;  3A1J B;  3FDS D;  3FDS C;  3A1J C;  1RXZ A;  5IY4 A;  3P91 A;  5IXA A;  1W60 A;  1IZ4 A;  3GPN A;  2IX2 B;  5HAC A;  2IX2 C;  3A1J A;  3V62 B;  1B8H A;  1VYM A;  2NTI B;  2HII A;  3GPM A;  5IWD A;  3AIX A;  1U76 A;  1UD9 A;  2ZVV A;  2IJX A;  3P87 A;  1RWZ A;  3K4X A;  5E0V A;  1SXJ F;  1UL1 A;  2HIK A;  2IO4 B;  3U61 F;  4TR6 A;  3GGR A;  3V60 B;  2ZVW A;  3F1W A; 
#chains in the Genus database with same CATH homology
 2ZVK A;  1AXC A;  3G65 B;  3HSL X;  3TBL A;  1U7B A;  5E0U A;  5DA7 A;  3G65 C;  4RJF A;  2AWA A;  1RXM A;  2AVT A;  5AUJ A;  4CS5 A;  1GE8 A;  2IZO B;  2ZVM A;  3A2F B;  4YHR A;  2IZO C;  1VYJ A;  2IX2 A;  2NTI C;  3HI8 A;  2OD8 A;  5CFK A;  1IZ5 A;  3G65 A;  5JNE D;  1PLR A;  1B77 A;  3AIZ C;  5B7O A;  5A6D A;  1YYP A;  2NTI A;  3WGW A;  4HK1 A;  3IFV A;  5DAI A;  1PLQ A;  1DML A;  2ZVL A;  2IO4 A;  5E0T A;  3VKX A;  3AIZ A;  1T6L A;  3U5Z F;  3V61 B;  4L6P A;  2HII B;  3AIX B;  1CZD A;  2HII C;  5H0T A;  3I2M X;  3U60 F;  2HIK B;  2Z0L A;  3GGR B;  4D2G A;  2HIK C;  4L60 A;  3P83 A;  3GGR C;  3LX1 A;  3LX2 A;  4ZTD A;  1ISQ A;  3A1J B;  3FDS D;  3FDS C;  3A1J C;  1RXZ A;  5IY4 A;  3P91 A;  5IXA A;  1W60 A;  1IZ4 A;  3GPN A;  2IX2 B;  5HAC A;  2IX2 C;  3A1J A;  3V62 B;  1B8H A;  1VYM A;  2NTI B;  2HII A;  3GPM A;  5IWD A;  3AIX A;  1U76 A;  1UD9 A;  2ZVV A;  2IJX A;  3P87 A;  1RWZ A;  3K4X A;  5E0V A;  1SXJ F;  1UL1 A;  2HIK A;  2IO4 B;  3U61 F;  4TR6 A;  3GGR A;  3V60 B;  2ZVW A;  3F1W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...