3P91A

Crystal structure of proliferating cellular nuclear antigen from entamoeba histolytica
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
254
structure length
245
Chain Sequence
MCAFHAKFKEAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLKPITLGINLTHLSKILKALDNDCGLILDVKKVDDAVLSITSENKTMKFGLNLVDIEAESVEIPELQSDAIITLSSAEFLKITKDFSALGDDSITIGCTKNEVTLTTKGAMCETCMTLSAGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKGEACVLKFYLAPKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Proliferating cell nuclear antigen
publication title Structure and biochemical characterization of proliferating cellular nuclear antigen from a parasitic protozoon.
pubmed doi rcsb
source organism Entamoeba histolytica
total genus 52
structure length 245
sequence length 254
ec nomenclature
pdb deposition date 2010-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3p91A00
1U7BA 1UD9A 4ZTDA 4HK1A 1RXMA 1AXCA 2IX2A 3U60F 1IZ5A 3GPMA 4TR6A 2HIIB 5H0TA 2ZVVA 1IZ4A 2HIIC 3K4XA 3A2FB 2AWAA 3F1WA 3G65B 3P91A 2AVTA 4RJFA 2HIKB 4YHRA 3A1JB 3U61F 2HIKC 1VYMA 2NTIA 1YYPA 1DMLA 3FDSC 1U76A 3P83A 3V60B 3VKXA 5E0VA 3TBLA 3I2MX 3LX2A 2IX2C 1CZDA 2ZVLA 1ISQA 2IO4A 5DA7A 5DAIA 3AIXA 2ZVKA 5CFKA 4L60A 1RWZA 4CS5A 1SXJF 2IJXA 5E0UA 2ZVWA 3FDSD 1T6LA 3U5ZF 3GGRA 1PLRA 2NTIB 1VYJA 3GPNA 5AUJA 2NTIC 3HI8A 3IFVA 2IX2B 2IZOB 5JNED 2IZOC 5B7OA 1UL1A 3AIZA 3G65A 3V61B 1GE8A 3A1JA 3GGRB 1B77A 2ZVMA 3GGRC 5HACA 1PLQA 1RXZA 5IWDA 3WGWA 3V62B 2HIIA 5E0TA 2Z0LA 3LX1A 3P87A 2IO4B 5IY4A 5IXAA 3AIXB 3AIZC 1W60A 3HSLX 5A6DA 2OD8A 3G65C 2HIKA 1B8HA 4D2GA 3A1JC 4L6PA
chains in the Genus database with same CATH superfamily
1U7BA 1UD9A 4ZTDA 4HK1A 1RXMA 1AXCA 2IX2A 3U60F 1IZ5A 3GPMA 4TR6A 2HIIB 5H0TA 2ZVVA 1IZ4A 2HIIC 3K4XA 3A2FB 2AWAA 3F1WA 3G65B 3P91A 2AVTA 4RJFA 2HIKB 4YHRA 3A1JB 3U61F 2HIKC 1VYMA 2NTIA 1YYPA 1DMLA 3FDSC 1U76A 3P83A 3V60B 3VKXA 5E0VA 3TBLA 3I2MX 3LX2A 2IX2C 1CZDA 2ZVLA 1ISQA 2IO4A 5DA7A 5DAIA 3AIXA 2ZVKA 5CFKA 4L60A 1RWZA 4CS5A 1SXJF 2IJXA 5E0UA 2ZVWA 3FDSD 1T6LA 3U5ZF 3GGRA 1PLRA 2NTIB 1VYJA 3GPNA 5AUJA 2NTIC 3HI8A 3IFVA 2IX2B 2IZOB 5JNED 2IZOC 5B7OA 1UL1A 3AIZA 3G65A 3V61B 1GE8A 3A1JA 3GGRB 1B77A 2ZVMA 3GGRC 5HACA 1PLQA 1RXZA 5IWDA 3WGWA 3V62B 2HIIA 5E0TA 2Z0LA 3LX1A 3P87A 2IO4B 5IY4A 5IXAA 3AIXB 3AIZC 1W60A 3HSLX 5A6DA 2OD8A 3G65C 2HIKA 1B8HA 4D2GA 3A1JC 4L6PA
chains in the Genus database with same CATH topology
1U7BA 1UD9A 4ZTDA 4HK1A 1RXMA 1AXCA 2IX2A 3U60F 1IZ5A 3GPMA 4TR6A 2HIIB 5H0TA 2ZVVA 1IZ4A 2HIIC 3K4XA 3A2FB 2AWAA 3F1WA 3G65B 3P91A 2AVTA 4RJFA 2HIKB 4YHRA 3A1JB 3U61F 2HIKC 1VYMA 2NTIA 1YYPA 1DMLA 3FDSC 1U76A 3P83A 3V60B 3VKXA 5E0VA 3TBLA 3I2MX 3LX2A 2IX2C 1CZDA 2ZVLA 1ISQA 2IO4A 5DA7A 5DAIA 3AIXA 2ZVKA 5CFKA 4L60A 1RWZA 4CS5A 1SXJF 2IJXA 5E0UA 2ZVWA 3FDSD 1T6LA 3U5ZF 3GGRA 1PLRA 2NTIB 1VYJA 3GPNA 5AUJA 2NTIC 3HI8A 3IFVA 2IX2B 2IZOB 5JNED 2IZOC 5B7OA 1UL1A 3AIZA 3G65A 3V61B 1GE8A 3A1JA 3GGRB 1B77A 2ZVMA 3GGRC 5HACA 1PLQA 1RXZA 5IWDA 3WGWA 3V62B 2HIIA 5E0TA 2Z0LA 3LX1A 3P87A 2IO4B 5IY4A 5IXAA 3AIXB 3AIZC 1W60A 3HSLX 5A6DA 2OD8A 3G65C 2HIKA 1B8HA 4D2GA 3A1JC 4L6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U7B A;  1UD9 A;  4ZTD A;  4HK1 A;  1RXM A;  1AXC A;  2IX2 A;  3U60 F;  1IZ5 A;  3GPM A;  4TR6 A;  2HII B;  5H0T A;  2ZVV A;  1IZ4 A;  2HII C;  3K4X A;  3A2F B;  2AWA A;  3F1W A;  3G65 B;  3P91 A;  2AVT A;  4RJF A;  2HIK B;  4YHR A;  3A1J B;  3U61 F;  2HIK C;  1VYM A;  2NTI A;  1YYP A;  1DML A;  3FDS C;  1U76 A;  3P83 A;  3V60 B;  3VKX A;  5E0V A;  3TBL A;  3I2M X;  3LX2 A;  2IX2 C;  1CZD A;  2ZVL A;  1ISQ A;  2IO4 A;  5DA7 A;  5DAI A;  3AIX A;  2ZVK A;  5CFK A;  4L60 A;  1RWZ A;  4CS5 A;  1SXJ F;  2IJX A;  5E0U A;  2ZVW A;  3FDS D;  1T6L A;  3U5Z F;  3GGR A;  1PLR A;  2NTI B;  1VYJ A;  3GPN A;  5AUJ A;  2NTI C;  3HI8 A;  3IFV A;  2IX2 B;  2IZO B;  5JNE D;  2IZO C;  5B7O A;  1UL1 A;  3AIZ A;  3G65 A;  3V61 B;  1GE8 A;  3A1J A;  3GGR B;  1B77 A;  2ZVM A;  3GGR C;  5HAC A;  1PLQ A;  1RXZ A;  5IWD A;  3WGW A;  3V62 B;  2HII A;  5E0T A;  2Z0L A;  3LX1 A;  3P87 A;  2IO4 B;  5IY4 A;  5IXA A;  3AIX B;  3AIZ C;  1W60 A;  3HSL X;  5A6D A;  2OD8 A;  3G65 C;  2HIK A;  1B8H A;  4D2G A;  3A1J C;  4L6P A; 
#chains in the Genus database with same CATH topology
 1U7B A;  1UD9 A;  4ZTD A;  4HK1 A;  1RXM A;  1AXC A;  2IX2 A;  3U60 F;  1IZ5 A;  3GPM A;  4TR6 A;  2HII B;  5H0T A;  2ZVV A;  1IZ4 A;  2HII C;  3K4X A;  3A2F B;  2AWA A;  3F1W A;  3G65 B;  3P91 A;  2AVT A;  4RJF A;  2HIK B;  4YHR A;  3A1J B;  3U61 F;  2HIK C;  1VYM A;  2NTI A;  1YYP A;  1DML A;  3FDS C;  1U76 A;  3P83 A;  3V60 B;  3VKX A;  5E0V A;  3TBL A;  3I2M X;  3LX2 A;  2IX2 C;  1CZD A;  2ZVL A;  1ISQ A;  2IO4 A;  5DA7 A;  5DAI A;  3AIX A;  2ZVK A;  5CFK A;  4L60 A;  1RWZ A;  4CS5 A;  1SXJ F;  2IJX A;  5E0U A;  2ZVW A;  3FDS D;  1T6L A;  3U5Z F;  3GGR A;  1PLR A;  2NTI B;  1VYJ A;  3GPN A;  5AUJ A;  2NTI C;  3HI8 A;  3IFV A;  2IX2 B;  2IZO B;  5JNE D;  2IZO C;  5B7O A;  1UL1 A;  3AIZ A;  3G65 A;  3V61 B;  1GE8 A;  3A1J A;  3GGR B;  1B77 A;  2ZVM A;  3GGR C;  5HAC A;  1PLQ A;  1RXZ A;  5IWD A;  3WGW A;  3V62 B;  2HII A;  5E0T A;  2Z0L A;  3LX1 A;  3P87 A;  2IO4 B;  5IY4 A;  5IXA A;  3AIX B;  3AIZ C;  1W60 A;  3HSL X;  5A6D A;  2OD8 A;  3G65 C;  2HIK A;  1B8H A;  4D2G A;  3A1J C;  4L6P A; 
#chains in the Genus database with same CATH homology
 1U7B A;  1UD9 A;  4ZTD A;  4HK1 A;  1RXM A;  1AXC A;  2IX2 A;  3U60 F;  1IZ5 A;  3GPM A;  4TR6 A;  2HII B;  5H0T A;  2ZVV A;  1IZ4 A;  2HII C;  3K4X A;  3A2F B;  2AWA A;  3F1W A;  3G65 B;  3P91 A;  2AVT A;  4RJF A;  2HIK B;  4YHR A;  3A1J B;  3U61 F;  2HIK C;  1VYM A;  2NTI A;  1YYP A;  1DML A;  3FDS C;  1U76 A;  3P83 A;  3V60 B;  3VKX A;  5E0V A;  3TBL A;  3I2M X;  3LX2 A;  2IX2 C;  1CZD A;  2ZVL A;  1ISQ A;  2IO4 A;  5DA7 A;  5DAI A;  3AIX A;  2ZVK A;  5CFK A;  4L60 A;  1RWZ A;  4CS5 A;  1SXJ F;  2IJX A;  5E0U A;  2ZVW A;  3FDS D;  1T6L A;  3U5Z F;  3GGR A;  1PLR A;  2NTI B;  1VYJ A;  3GPN A;  5AUJ A;  2NTI C;  3HI8 A;  3IFV A;  2IX2 B;  2IZO B;  5JNE D;  2IZO C;  5B7O A;  1UL1 A;  3AIZ A;  3G65 A;  3V61 B;  1GE8 A;  3A1J A;  3GGR B;  1B77 A;  2ZVM A;  3GGR C;  5HAC A;  1PLQ A;  1RXZ A;  5IWD A;  3WGW A;  3V62 B;  2HII A;  5E0T A;  2Z0L A;  3LX1 A;  3P87 A;  2IO4 B;  5IY4 A;  5IXA A;  3AIX B;  3AIZ C;  1W60 A;  3HSL X;  5A6D A;  2OD8 A;  3G65 C;  2HIK A;  1B8H A;  4D2G A;  3A1J C;  4L6P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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