3U60F

Structure of t4 bacteriophage clamp loader bound to open clamp, dna and atp analog
Total Genus 39
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
228
structure length
228
Chain Sequence
MKLSKDTTALLKNFATINSGIMLKSGQFIMTRAVNGTTYAEANISDVIDFDVAIYDLNGFLGILSLVNDDAEISQSEDGNIKIADARSTIFWPAADPSTVVAPNKPIPFPVASAVTEIKAEDLQQLLRVSRGLQIDTIAITVKEGKIVINGFNKVEDSALTRVKYSLTLGDYDGENTFNFIINMANMKMQPGNYKLLLWAKGKQGAAKFEGEHANYVVALEADSTHDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein/dna
molecule keywords DNA polymerase accessory protein 44
publication title How a DNA polymerase clamp loader opens a sliding clamp.
pubmed doi rcsb
source organism Enterobacteria phage t4
total genus 39
structure length 228
sequence length 228
chains with identical sequence G, H
ec nomenclature
pdb deposition date 2011-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF02916 DNA_PPF DNA polymerase processivity factor
F PF09116 gp45-slide_C gp45 sliding clamp, C terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3u60F00
2OD8A 3FDSC 5A6DA 5IY4A 2IZOC 5HACA 3P87A 2IJXA 1UL1A 4YHRA 4D2GA 3A1JA 2NTIC 3V62B 3G65C 2ZVKA 1RXMA 1UD9A 3V61B 5IWDA 5AUJA 5E0TA 1U7BA 2HIKA 2HIIA 1DMLA 2ZVMA 3U61F 3V60B 3HSLX 5DAIA 2IX2B 3AIZA 2ZVWA 5DA7A 3GGRB 5B7OA 5JNED 1RWZA 1SXJF 4L6PA 1U76A 2IO4B 2IZOB 1PLRA 3I2MX 2HIIC 2Z0LA 5IXAA 2NTIB 3AIZC 2ZVVA 1YYPA 3U60F 1VYJA 1B8HA 3VKXA 1RXZA 3TBLA 2IX2A 3P83A 3A1JC 3F1WA 3A2FB 3AIXB 1IZ5A 5E0VA 3GGRA 1CZDA 3HI8A 4RJFA 2IO4A 2HIKC 2AVTA 3GPMA 1GE8A 1T6LA 2NTIA 2AWAA 3LX2A 3G65B 5H0TA 3FDSD 5CFKA 4CS5A 3GPNA 1B77A 2ZVLA 1AXCA 3P91A 4L60A 3K4XA 3AIXA 1PLQA 3A1JB 1IZ4A 1W60A 3LX1A 3IFVA 4TR6A 3WGWA 2HIKB 2HIIB 5E0UA 3U5ZF 2IX2C 4ZTDA 1VYMA 3G65A 4HK1A 1ISQA 3GGRC
chains in the Genus database with same CATH superfamily
2OD8A 3FDSC 5A6DA 5IY4A 2IZOC 5HACA 3P87A 2IJXA 1UL1A 4YHRA 4D2GA 3A1JA 2NTIC 3V62B 3G65C 2ZVKA 1RXMA 1UD9A 3V61B 5IWDA 5AUJA 5E0TA 1U7BA 2HIKA 2HIIA 1DMLA 2ZVMA 3U61F 3V60B 3HSLX 5DAIA 2IX2B 3AIZA 2ZVWA 5DA7A 3GGRB 5B7OA 5JNED 1RWZA 1SXJF 4L6PA 1U76A 2IO4B 2IZOB 1PLRA 3I2MX 2HIIC 2Z0LA 5IXAA 2NTIB 3AIZC 2ZVVA 1YYPA 3U60F 1VYJA 1B8HA 3VKXA 1RXZA 3TBLA 2IX2A 3P83A 3A1JC 3F1WA 3A2FB 3AIXB 1IZ5A 5E0VA 3GGRA 1CZDA 3HI8A 4RJFA 2IO4A 2HIKC 2AVTA 3GPMA 1GE8A 1T6LA 2NTIA 2AWAA 3LX2A 3G65B 5H0TA 3FDSD 5CFKA 4CS5A 3GPNA 1B77A 2ZVLA 1AXCA 3P91A 4L60A 3K4XA 3AIXA 1PLQA 3A1JB 1IZ4A 1W60A 3LX1A 3IFVA 4TR6A 3WGWA 2HIKB 2HIIB 5E0UA 3U5ZF 2IX2C 4ZTDA 1VYMA 3G65A 4HK1A 1ISQA 3GGRC
chains in the Genus database with same CATH topology
2OD8A 3FDSC 5A6DA 5IY4A 2IZOC 5HACA 3P87A 2IJXA 1UL1A 4YHRA 4D2GA 3A1JA 2NTIC 3V62B 3G65C 2ZVKA 1RXMA 1UD9A 3V61B 5IWDA 5AUJA 5E0TA 1U7BA 2HIKA 2HIIA 1DMLA 2ZVMA 3U61F 3V60B 3HSLX 5DAIA 2IX2B 3AIZA 2ZVWA 5DA7A 3GGRB 5B7OA 5JNED 1RWZA 1SXJF 4L6PA 1U76A 2IO4B 2IZOB 1PLRA 3I2MX 2HIIC 2Z0LA 5IXAA 2NTIB 3AIZC 2ZVVA 1YYPA 3U60F 1VYJA 1B8HA 3VKXA 1RXZA 3TBLA 2IX2A 3P83A 3A1JC 3F1WA 3A2FB 3AIXB 1IZ5A 5E0VA 3GGRA 1CZDA 3HI8A 4RJFA 2IO4A 2HIKC 2AVTA 3GPMA 1GE8A 1T6LA 2NTIA 2AWAA 3LX2A 3G65B 5H0TA 3FDSD 5CFKA 4CS5A 3GPNA 1B77A 2ZVLA 1AXCA 3P91A 4L60A 3K4XA 3AIXA 1PLQA 3A1JB 1IZ4A 1W60A 3LX1A 3IFVA 4TR6A 3WGWA 2HIKB 2HIIB 5E0UA 3U5ZF 2IX2C 4ZTDA 1VYMA 3G65A 4HK1A 1ISQA 3GGRC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OD8 A;  3FDS C;  5A6D A;  5IY4 A;  2IZO C;  5HAC A;  3P87 A;  2IJX A;  1UL1 A;  4YHR A;  4D2G A;  3A1J A;  2NTI C;  3V62 B;  3G65 C;  2ZVK A;  1RXM A;  1UD9 A;  3V61 B;  5IWD A;  5AUJ A;  5E0T A;  1U7B A;  2HIK A;  2HII A;  1DML A;  2ZVM A;  3U61 F;  3V60 B;  3HSL X;  5DAI A;  2IX2 B;  3AIZ A;  2ZVW A;  5DA7 A;  3GGR B;  5B7O A;  5JNE D;  1RWZ A;  1SXJ F;  4L6P A;  1U76 A;  2IO4 B;  2IZO B;  1PLR A;  3I2M X;  2HII C;  2Z0L A;  5IXA A;  2NTI B;  3AIZ C;  2ZVV A;  1YYP A;  3U60 F;  1VYJ A;  1B8H A;  3VKX A;  1RXZ A;  3TBL A;  2IX2 A;  3P83 A;  3A1J C;  3F1W A;  3A2F B;  3AIX B;  1IZ5 A;  5E0V A;  3GGR A;  1CZD A;  3HI8 A;  4RJF A;  2IO4 A;  2HIK C;  2AVT A;  3GPM A;  1GE8 A;  1T6L A;  2NTI A;  2AWA A;  3LX2 A;  3G65 B;  5H0T A;  3FDS D;  5CFK A;  4CS5 A;  3GPN A;  1B77 A;  2ZVL A;  1AXC A;  3P91 A;  4L60 A;  3K4X A;  3AIX A;  1PLQ A;  3A1J B;  1IZ4 A;  1W60 A;  3LX1 A;  3IFV A;  4TR6 A;  3WGW A;  2HIK B;  2HII B;  5E0U A;  3U5Z F;  2IX2 C;  4ZTD A;  1VYM A;  3G65 A;  4HK1 A;  1ISQ A;  3GGR C; 
#chains in the Genus database with same CATH topology
 2OD8 A;  3FDS C;  5A6D A;  5IY4 A;  2IZO C;  5HAC A;  3P87 A;  2IJX A;  1UL1 A;  4YHR A;  4D2G A;  3A1J A;  2NTI C;  3V62 B;  3G65 C;  2ZVK A;  1RXM A;  1UD9 A;  3V61 B;  5IWD A;  5AUJ A;  5E0T A;  1U7B A;  2HIK A;  2HII A;  1DML A;  2ZVM A;  3U61 F;  3V60 B;  3HSL X;  5DAI A;  2IX2 B;  3AIZ A;  2ZVW A;  5DA7 A;  3GGR B;  5B7O A;  5JNE D;  1RWZ A;  1SXJ F;  4L6P A;  1U76 A;  2IO4 B;  2IZO B;  1PLR A;  3I2M X;  2HII C;  2Z0L A;  5IXA A;  2NTI B;  3AIZ C;  2ZVV A;  1YYP A;  3U60 F;  1VYJ A;  1B8H A;  3VKX A;  1RXZ A;  3TBL A;  2IX2 A;  3P83 A;  3A1J C;  3F1W A;  3A2F B;  3AIX B;  1IZ5 A;  5E0V A;  3GGR A;  1CZD A;  3HI8 A;  4RJF A;  2IO4 A;  2HIK C;  2AVT A;  3GPM A;  1GE8 A;  1T6L A;  2NTI A;  2AWA A;  3LX2 A;  3G65 B;  5H0T A;  3FDS D;  5CFK A;  4CS5 A;  3GPN A;  1B77 A;  2ZVL A;  1AXC A;  3P91 A;  4L60 A;  3K4X A;  3AIX A;  1PLQ A;  3A1J B;  1IZ4 A;  1W60 A;  3LX1 A;  3IFV A;  4TR6 A;  3WGW A;  2HIK B;  2HII B;  5E0U A;  3U5Z F;  2IX2 C;  4ZTD A;  1VYM A;  3G65 A;  4HK1 A;  1ISQ A;  3GGR C; 
#chains in the Genus database with same CATH homology
 2OD8 A;  3FDS C;  5A6D A;  5IY4 A;  2IZO C;  5HAC A;  3P87 A;  2IJX A;  1UL1 A;  4YHR A;  4D2G A;  3A1J A;  2NTI C;  3V62 B;  3G65 C;  2ZVK A;  1RXM A;  1UD9 A;  3V61 B;  5IWD A;  5AUJ A;  5E0T A;  1U7B A;  2HIK A;  2HII A;  1DML A;  2ZVM A;  3U61 F;  3V60 B;  3HSL X;  5DAI A;  2IX2 B;  3AIZ A;  2ZVW A;  5DA7 A;  3GGR B;  5B7O A;  5JNE D;  1RWZ A;  1SXJ F;  4L6P A;  1U76 A;  2IO4 B;  2IZO B;  1PLR A;  3I2M X;  2HII C;  2Z0L A;  5IXA A;  2NTI B;  3AIZ C;  2ZVV A;  1YYP A;  3U60 F;  1VYJ A;  1B8H A;  3VKX A;  1RXZ A;  3TBL A;  2IX2 A;  3P83 A;  3A1J C;  3F1W A;  3A2F B;  3AIX B;  1IZ5 A;  5E0V A;  3GGR A;  1CZD A;  3HI8 A;  4RJF A;  2IO4 A;  2HIK C;  2AVT A;  3GPM A;  1GE8 A;  1T6L A;  2NTI A;  2AWA A;  3LX2 A;  3G65 B;  5H0T A;  3FDS D;  5CFK A;  4CS5 A;  3GPN A;  1B77 A;  2ZVL A;  1AXC A;  3P91 A;  4L60 A;  3K4X A;  3AIX A;  1PLQ A;  3A1J B;  1IZ4 A;  1W60 A;  3LX1 A;  3IFV A;  4TR6 A;  3WGW A;  2HIK B;  2HII B;  5E0U A;  3U5Z F;  2IX2 C;  4ZTD A;  1VYM A;  3G65 A;  4HK1 A;  1ISQ A;  3GGR C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...