3U61F

Structure of t4 bacteriophage clamp loader bound to closed clamp, dna and atp analog and adp
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
222
structure length
222
Chain Sequence
MKLSKDTTALLKNFATINSGIMLKSGQFIMTRAVNGTTYAEANISDVIDFDVAIYDLNGFLGILSLVNDDAEISQSEDGNIKIADARSTIFWPAADPSTVVAPNKPIPFPVASAVTEIKAEDLQQLLRVSRGLQIDTIAITVKEGKIVINGFNKVEDSALTRVKYSLTLGDYDGENTFNFIINMANMKMQPGNYKLLLWAKGKQGAAKFEGEHANYVVALEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein/dna
molecule keywords DNA polymerase accessory protein 44
publication title How a DNA polymerase clamp loader opens a sliding clamp.
pubmed doi rcsb
source organism Enterobacteria phage t4
total genus 44
structure length 222
sequence length 222
chains with identical sequence G, H
ec nomenclature
pdb deposition date 2011-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF02916 DNA_PPF DNA polymerase processivity factor
F PF09116 gp45-slide_C gp45 sliding clamp, C terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3u61F00
2NTIC 2IX2B 5H0TA 2IX2C 3WGWA 1IZ5A 5DA7A 2AWAA 1VYMA 5IWDA 3LX1A 1U7BA 4HK1A 1PLQA 3G65B 3G65C 2IJXA 1DMLA 3G65A 2OD8A 3U60F 4YHRA 3GPMA 4L60A 1UD9A 3GGRB 2NTIA 3GGRC 5A6DA 1T6LA 2AVTA 5CFKA 2IX2A 5DAIA 1AXCA 3LX2A 3V60B 1UL1A 3I2MX 1YYPA 3VKXA 2HIIB 3TBLA 3A1JB 5E0TA 3A1JC 1U76A 3A1JA 5HACA 1PLRA 3A2FB 2HIKB 2HIKC 2ZVKA 2IZOB 2IZOC 2ZVLA 3F1WA 3FDSD 3AIXB 3U61F 1GE8A 3GGRA 5JNED 3P91A 3AIXA 1VYJA 5IXAA 3HI8A 3IFVA 1IZ4A 2HIIC 1SXJF 2HIIA 5IY4A 3V61B 3U5ZF 1B77A 3AIZC 2IO4B 3HSLX 3AIZA 3V62B 1RXMA 1W60A 5AUJA 2HIKA 2ZVWA 1B8HA 2ZVVA 1ISQA 4D2GA 5B7OA 2Z0LA 1RXZA 4L6PA 4RJFA 2ZVMA 4ZTDA 4CS5A 3FDSC 3P83A 1CZDA 4TR6A 3GPNA 1RWZA 5E0VA 3K4XA 5E0UA 3P87A 2IO4A 2NTIB
chains in the Genus database with same CATH superfamily
2NTIC 2IX2B 5H0TA 2IX2C 3WGWA 1IZ5A 5DA7A 2AWAA 1VYMA 5IWDA 3LX1A 1U7BA 4HK1A 1PLQA 3G65B 3G65C 2IJXA 1DMLA 3G65A 2OD8A 3U60F 4YHRA 3GPMA 4L60A 1UD9A 3GGRB 2NTIA 3GGRC 5A6DA 1T6LA 2AVTA 5CFKA 2IX2A 5DAIA 1AXCA 3LX2A 3V60B 1UL1A 3I2MX 1YYPA 3VKXA 2HIIB 3TBLA 3A1JB 5E0TA 3A1JC 1U76A 3A1JA 5HACA 1PLRA 3A2FB 2HIKB 2HIKC 2ZVKA 2IZOB 2IZOC 2ZVLA 3F1WA 3FDSD 3AIXB 3U61F 1GE8A 3GGRA 5JNED 3P91A 3AIXA 1VYJA 5IXAA 3HI8A 3IFVA 1IZ4A 2HIIC 1SXJF 2HIIA 5IY4A 3V61B 3U5ZF 1B77A 3AIZC 2IO4B 3HSLX 3AIZA 3V62B 1RXMA 1W60A 5AUJA 2HIKA 2ZVWA 1B8HA 2ZVVA 1ISQA 4D2GA 5B7OA 2Z0LA 1RXZA 4L6PA 4RJFA 2ZVMA 4ZTDA 4CS5A 3FDSC 3P83A 1CZDA 4TR6A 3GPNA 1RWZA 5E0VA 3K4XA 5E0UA 3P87A 2IO4A 2NTIB
chains in the Genus database with same CATH topology
2NTIC 2IX2B 5H0TA 2IX2C 3WGWA 1IZ5A 5DA7A 2AWAA 1VYMA 5IWDA 3LX1A 1U7BA 4HK1A 1PLQA 3G65B 3G65C 2IJXA 1DMLA 3G65A 2OD8A 3U60F 4YHRA 3GPMA 4L60A 1UD9A 3GGRB 2NTIA 3GGRC 5A6DA 1T6LA 2AVTA 5CFKA 2IX2A 5DAIA 1AXCA 3LX2A 3V60B 1UL1A 3I2MX 1YYPA 3VKXA 2HIIB 3TBLA 3A1JB 5E0TA 3A1JC 1U76A 3A1JA 5HACA 1PLRA 3A2FB 2HIKB 2HIKC 2ZVKA 2IZOB 2IZOC 2ZVLA 3F1WA 3FDSD 3AIXB 3U61F 1GE8A 3GGRA 5JNED 3P91A 3AIXA 1VYJA 5IXAA 3HI8A 3IFVA 1IZ4A 2HIIC 1SXJF 2HIIA 5IY4A 3V61B 3U5ZF 1B77A 3AIZC 2IO4B 3HSLX 3AIZA 3V62B 1RXMA 1W60A 5AUJA 2HIKA 2ZVWA 1B8HA 2ZVVA 1ISQA 4D2GA 5B7OA 2Z0LA 1RXZA 4L6PA 4RJFA 2ZVMA 4ZTDA 4CS5A 3FDSC 3P83A 1CZDA 4TR6A 3GPNA 1RWZA 5E0VA 3K4XA 5E0UA 3P87A 2IO4A 2NTIB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NTI C;  2IX2 B;  5H0T A;  2IX2 C;  3WGW A;  1IZ5 A;  5DA7 A;  2AWA A;  1VYM A;  5IWD A;  3LX1 A;  1U7B A;  4HK1 A;  1PLQ A;  3G65 B;  3G65 C;  2IJX A;  1DML A;  3G65 A;  2OD8 A;  3U60 F;  4YHR A;  3GPM A;  4L60 A;  1UD9 A;  3GGR B;  2NTI A;  3GGR C;  5A6D A;  1T6L A;  2AVT A;  5CFK A;  2IX2 A;  5DAI A;  1AXC A;  3LX2 A;  3V60 B;  1UL1 A;  3I2M X;  1YYP A;  3VKX A;  2HII B;  3TBL A;  3A1J B;  5E0T A;  3A1J C;  1U76 A;  3A1J A;  5HAC A;  1PLR A;  3A2F B;  2HIK B;  2HIK C;  2ZVK A;  2IZO B;  2IZO C;  2ZVL A;  3F1W A;  3FDS D;  3AIX B;  3U61 F;  1GE8 A;  3GGR A;  5JNE D;  3P91 A;  3AIX A;  1VYJ A;  5IXA A;  3HI8 A;  3IFV A;  1IZ4 A;  2HII C;  1SXJ F;  2HII A;  5IY4 A;  3V61 B;  3U5Z F;  1B77 A;  3AIZ C;  2IO4 B;  3HSL X;  3AIZ A;  3V62 B;  1RXM A;  1W60 A;  5AUJ A;  2HIK A;  2ZVW A;  1B8H A;  2ZVV A;  1ISQ A;  4D2G A;  5B7O A;  2Z0L A;  1RXZ A;  4L6P A;  4RJF A;  2ZVM A;  4ZTD A;  4CS5 A;  3FDS C;  3P83 A;  1CZD A;  4TR6 A;  3GPN A;  1RWZ A;  5E0V A;  3K4X A;  5E0U A;  3P87 A;  2IO4 A;  2NTI B; 
#chains in the Genus database with same CATH topology
 2NTI C;  2IX2 B;  5H0T A;  2IX2 C;  3WGW A;  1IZ5 A;  5DA7 A;  2AWA A;  1VYM A;  5IWD A;  3LX1 A;  1U7B A;  4HK1 A;  1PLQ A;  3G65 B;  3G65 C;  2IJX A;  1DML A;  3G65 A;  2OD8 A;  3U60 F;  4YHR A;  3GPM A;  4L60 A;  1UD9 A;  3GGR B;  2NTI A;  3GGR C;  5A6D A;  1T6L A;  2AVT A;  5CFK A;  2IX2 A;  5DAI A;  1AXC A;  3LX2 A;  3V60 B;  1UL1 A;  3I2M X;  1YYP A;  3VKX A;  2HII B;  3TBL A;  3A1J B;  5E0T A;  3A1J C;  1U76 A;  3A1J A;  5HAC A;  1PLR A;  3A2F B;  2HIK B;  2HIK C;  2ZVK A;  2IZO B;  2IZO C;  2ZVL A;  3F1W A;  3FDS D;  3AIX B;  3U61 F;  1GE8 A;  3GGR A;  5JNE D;  3P91 A;  3AIX A;  1VYJ A;  5IXA A;  3HI8 A;  3IFV A;  1IZ4 A;  2HII C;  1SXJ F;  2HII A;  5IY4 A;  3V61 B;  3U5Z F;  1B77 A;  3AIZ C;  2IO4 B;  3HSL X;  3AIZ A;  3V62 B;  1RXM A;  1W60 A;  5AUJ A;  2HIK A;  2ZVW A;  1B8H A;  2ZVV A;  1ISQ A;  4D2G A;  5B7O A;  2Z0L A;  1RXZ A;  4L6P A;  4RJF A;  2ZVM A;  4ZTD A;  4CS5 A;  3FDS C;  3P83 A;  1CZD A;  4TR6 A;  3GPN A;  1RWZ A;  5E0V A;  3K4X A;  5E0U A;  3P87 A;  2IO4 A;  2NTI B; 
#chains in the Genus database with same CATH homology
 2NTI C;  2IX2 B;  5H0T A;  2IX2 C;  3WGW A;  1IZ5 A;  5DA7 A;  2AWA A;  1VYM A;  5IWD A;  3LX1 A;  1U7B A;  4HK1 A;  1PLQ A;  3G65 B;  3G65 C;  2IJX A;  1DML A;  3G65 A;  2OD8 A;  3U60 F;  4YHR A;  3GPM A;  4L60 A;  1UD9 A;  3GGR B;  2NTI A;  3GGR C;  5A6D A;  1T6L A;  2AVT A;  5CFK A;  2IX2 A;  5DAI A;  1AXC A;  3LX2 A;  3V60 B;  1UL1 A;  3I2M X;  1YYP A;  3VKX A;  2HII B;  3TBL A;  3A1J B;  5E0T A;  3A1J C;  1U76 A;  3A1J A;  5HAC A;  1PLR A;  3A2F B;  2HIK B;  2HIK C;  2ZVK A;  2IZO B;  2IZO C;  2ZVL A;  3F1W A;  3FDS D;  3AIX B;  3U61 F;  1GE8 A;  3GGR A;  5JNE D;  3P91 A;  3AIX A;  1VYJ A;  5IXA A;  3HI8 A;  3IFV A;  1IZ4 A;  2HII C;  1SXJ F;  2HII A;  5IY4 A;  3V61 B;  3U5Z F;  1B77 A;  3AIZ C;  2IO4 B;  3HSL X;  3AIZ A;  3V62 B;  1RXM A;  1W60 A;  5AUJ A;  2HIK A;  2ZVW A;  1B8H A;  2ZVV A;  1ISQ A;  4D2G A;  5B7O A;  2Z0L A;  1RXZ A;  4L6P A;  4RJF A;  2ZVM A;  4ZTD A;  4CS5 A;  3FDS C;  3P83 A;  1CZD A;  4TR6 A;  3GPN A;  1RWZ A;  5E0V A;  3K4X A;  5E0U A;  3P87 A;  2IO4 A;  2NTI B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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