4HK1A

Crystal structure of pcna from drosophila melanogaster
Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
257
structure length
243
Chain Sequence
GDPMFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQNADTVTIMFESQEKVSDYEMKLMNLDQEHLGIPSVVRMPAMEFARICRDLAQFSESVVICCTKGVKFSASGDVGTANIKLAQTEEEAVIIEMQEPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYYLAPK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-6)S6 (66-71)TIV2 (92-96)TVIII4 (62-65)TVIII1 (6-9)TI1 (19-22)TI2 (20-23)S17 (235-241)TIV1 (21-24)S2 (25-31)TI3 (31-34)S3 (34-40)3H1 (54-56)TI4 (41-44)S4 (47-53)EMPTYTIV8 (199-202)TVIII3 (57-60)S5 (59-62)TII1 (230-233)S7 (87-92)TI5 (83-86)TIV4 (105-110)S8 (98-104)S9 (111-117)S10 (136-140)AH4 (209-215)AH3 (141-153)TIV5 (162-166)S11 (157-162)S13 (176-182)TIV7 (173-176)S12 (167-173)TII2 (241-244)S16 (224-228)3H2 (216-221)AH1 (9-18)AH2 (72-80)S15 (203-208)S14 (196-198)Updating...
connected with : NaN
molecule tags Cell cycle
source organism Drosophila melanogaster
publication title Structure of PCNA from Drosophila melanogaster.
pubmed doi rcsb
molecule keywords Proliferating cell nuclear antigen
total genus 54
structure length 243
sequence length 257
ec nomenclature
pdb deposition date 2012-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 4hk1A00
1T6LA 3A1JC 3F1WA 3V62B 2AVTA 2ZVLA 3G65A 4TR6A 1PLRA 1W60A 2NTIA 5IY4A 3LX1A 5HACA 2ZVVA 1PLQA 4L6PA 2IX2B 2IO4B 2HIKB 3AIZA 2HIIC 4RJFA 1VYMA 2ZVKA 3VKXA 2IZOB 3GGRA 1AXCA 3A2FB 2AWAA 3AIXA 5CFKA 3FDSC 1CZDA 3P87A 4YHRA 2IJXA 3GPMA 3G65B 3A1JA 2NTIB 3U61F 1DMLA 1RXZA 3IFVA 5IWDA 4CS5A 3U5ZF 5DA7A 2OD8A 5H0TA 3LX2A 5AUJA 2IX2C 2HIKC 1IZ5A 1U7BA 1UL1A 2HIIA 3TBLA 3FDSD 1YYPA 2IZOC 3GGRB 4L60A 3P91A 3HSLX 3WGWA 3I2MX 3AIXB 3HI8A 3U60F 5E0TA 5IXAA 1VYJA 1U76A 4D2GA 4ZTDA 3G65C 1GE8A 3A1JB 1RWZA 1ISQA 2NTIC 5JNED 3P83A 5B7OA 2Z0LA 5A6DA 3V61B 3K4XA 1RXMA 3AIZC 2IX2A 2IO4A 2ZVMA 3V60B 2HIKA 2HIIB 1SXJF 5DAIA 4HK1A 3GGRC 5E0VA 1B8HA 1B77A 1IZ4A 2ZVWA 3GPNA 1UD9A 5E0UA
chains in the Genus database with same CATH superfamily
1T6LA 3A1JC 3F1WA 3V62B 2AVTA 2ZVLA 3G65A 4TR6A 1PLRA 1W60A 2NTIA 5IY4A 3LX1A 5HACA 2ZVVA 1PLQA 4L6PA 2IX2B 2IO4B 2HIKB 3AIZA 2HIIC 4RJFA 1VYMA 2ZVKA 3VKXA 2IZOB 3GGRA 1AXCA 3A2FB 2AWAA 3AIXA 5CFKA 3FDSC 1CZDA 3P87A 4YHRA 2IJXA 3GPMA 3G65B 3A1JA 2NTIB 3U61F 1DMLA 1RXZA 3IFVA 5IWDA 4CS5A 3U5ZF 5DA7A 2OD8A 5H0TA 3LX2A 5AUJA 2IX2C 2HIKC 1IZ5A 1U7BA 1UL1A 2HIIA 3TBLA 3FDSD 1YYPA 2IZOC 3GGRB 4L60A 3P91A 3HSLX 3WGWA 3I2MX 3AIXB 3HI8A 3U60F 5E0TA 5IXAA 1VYJA 1U76A 4D2GA 4ZTDA 3G65C 1GE8A 3A1JB 1RWZA 1ISQA 2NTIC 5JNED 3P83A 5B7OA 2Z0LA 5A6DA 3V61B 3K4XA 1RXMA 3AIZC 2IX2A 2IO4A 2ZVMA 3V60B 2HIKA 2HIIB 1SXJF 5DAIA 4HK1A 3GGRC 5E0VA 1B8HA 1B77A 1IZ4A 2ZVWA 3GPNA 1UD9A 5E0UA
chains in the Genus database with same CATH topology
1T6LA 3A1JC 3F1WA 3V62B 2AVTA 2ZVLA 3G65A 4TR6A 1PLRA 1W60A 2NTIA 5IY4A 3LX1A 5HACA 2ZVVA 1PLQA 4L6PA 2IX2B 2IO4B 2HIKB 3AIZA 2HIIC 4RJFA 1VYMA 2ZVKA 3VKXA 2IZOB 3GGRA 1AXCA 3A2FB 2AWAA 3AIXA 5CFKA 3FDSC 1CZDA 3P87A 4YHRA 2IJXA 3GPMA 3G65B 3A1JA 2NTIB 3U61F 1DMLA 1RXZA 3IFVA 5IWDA 4CS5A 3U5ZF 5DA7A 2OD8A 5H0TA 3LX2A 5AUJA 2IX2C 2HIKC 1IZ5A 1U7BA 1UL1A 2HIIA 3TBLA 3FDSD 1YYPA 2IZOC 3GGRB 4L60A 3P91A 3HSLX 3WGWA 3I2MX 3AIXB 3HI8A 3U60F 5E0TA 5IXAA 1VYJA 1U76A 4D2GA 4ZTDA 3G65C 1GE8A 3A1JB 1RWZA 1ISQA 2NTIC 5JNED 3P83A 5B7OA 2Z0LA 5A6DA 3V61B 3K4XA 1RXMA 3AIZC 2IX2A 2IO4A 2ZVMA 3V60B 2HIKA 2HIIB 1SXJF 5DAIA 4HK1A 3GGRC 5E0VA 1B8HA 1B77A 1IZ4A 2ZVWA 3GPNA 1UD9A 5E0UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T6L A;  3A1J C;  3F1W A;  3V62 B;  2AVT A;  2ZVL A;  3G65 A;  4TR6 A;  1PLR A;  1W60 A;  2NTI A;  5IY4 A;  3LX1 A;  5HAC A;  2ZVV A;  1PLQ A;  4L6P A;  2IX2 B;  2IO4 B;  2HIK B;  3AIZ A;  2HII C;  4RJF A;  1VYM A;  2ZVK A;  3VKX A;  2IZO B;  3GGR A;  1AXC A;  3A2F B;  2AWA A;  3AIX A;  5CFK A;  3FDS C;  1CZD A;  3P87 A;  4YHR A;  2IJX A;  3GPM A;  3G65 B;  3A1J A;  2NTI B;  3U61 F;  1DML A;  1RXZ A;  3IFV A;  5IWD A;  4CS5 A;  3U5Z F;  5DA7 A;  2OD8 A;  5H0T A;  3LX2 A;  5AUJ A;  2IX2 C;  2HIK C;  1IZ5 A;  1U7B A;  1UL1 A;  2HII A;  3TBL A;  3FDS D;  1YYP A;  2IZO C;  3GGR B;  4L60 A;  3P91 A;  3HSL X;  3WGW A;  3I2M X;  3AIX B;  3HI8 A;  3U60 F;  5E0T A;  5IXA A;  1VYJ A;  1U76 A;  4D2G A;  4ZTD A;  3G65 C;  1GE8 A;  3A1J B;  1RWZ A;  1ISQ A;  2NTI C;  5JNE D;  3P83 A;  5B7O A;  2Z0L A;  5A6D A;  3V61 B;  3K4X A;  1RXM A;  3AIZ C;  2IX2 A;  2IO4 A;  2ZVM A;  3V60 B;  2HIK A;  2HII B;  1SXJ F;  5DAI A;  4HK1 A;  3GGR C;  5E0V A;  1B8H A;  1B77 A;  1IZ4 A;  2ZVW A;  3GPN A;  1UD9 A;  5E0U A; 
#chains in the Genus database with same CATH topology
 1T6L A;  3A1J C;  3F1W A;  3V62 B;  2AVT A;  2ZVL A;  3G65 A;  4TR6 A;  1PLR A;  1W60 A;  2NTI A;  5IY4 A;  3LX1 A;  5HAC A;  2ZVV A;  1PLQ A;  4L6P A;  2IX2 B;  2IO4 B;  2HIK B;  3AIZ A;  2HII C;  4RJF A;  1VYM A;  2ZVK A;  3VKX A;  2IZO B;  3GGR A;  1AXC A;  3A2F B;  2AWA A;  3AIX A;  5CFK A;  3FDS C;  1CZD A;  3P87 A;  4YHR A;  2IJX A;  3GPM A;  3G65 B;  3A1J A;  2NTI B;  3U61 F;  1DML A;  1RXZ A;  3IFV A;  5IWD A;  4CS5 A;  3U5Z F;  5DA7 A;  2OD8 A;  5H0T A;  3LX2 A;  5AUJ A;  2IX2 C;  2HIK C;  1IZ5 A;  1U7B A;  1UL1 A;  2HII A;  3TBL A;  3FDS D;  1YYP A;  2IZO C;  3GGR B;  4L60 A;  3P91 A;  3HSL X;  3WGW A;  3I2M X;  3AIX B;  3HI8 A;  3U60 F;  5E0T A;  5IXA A;  1VYJ A;  1U76 A;  4D2G A;  4ZTD A;  3G65 C;  1GE8 A;  3A1J B;  1RWZ A;  1ISQ A;  2NTI C;  5JNE D;  3P83 A;  5B7O A;  2Z0L A;  5A6D A;  3V61 B;  3K4X A;  1RXM A;  3AIZ C;  2IX2 A;  2IO4 A;  2ZVM A;  3V60 B;  2HIK A;  2HII B;  1SXJ F;  5DAI A;  4HK1 A;  3GGR C;  5E0V A;  1B8H A;  1B77 A;  1IZ4 A;  2ZVW A;  3GPN A;  1UD9 A;  5E0U A; 
#chains in the Genus database with same CATH homology
 1T6L A;  3A1J C;  3F1W A;  3V62 B;  2AVT A;  2ZVL A;  3G65 A;  4TR6 A;  1PLR A;  1W60 A;  2NTI A;  5IY4 A;  3LX1 A;  5HAC A;  2ZVV A;  1PLQ A;  4L6P A;  2IX2 B;  2IO4 B;  2HIK B;  3AIZ A;  2HII C;  4RJF A;  1VYM A;  2ZVK A;  3VKX A;  2IZO B;  3GGR A;  1AXC A;  3A2F B;  2AWA A;  3AIX A;  5CFK A;  3FDS C;  1CZD A;  3P87 A;  4YHR A;  2IJX A;  3GPM A;  3G65 B;  3A1J A;  2NTI B;  3U61 F;  1DML A;  1RXZ A;  3IFV A;  5IWD A;  4CS5 A;  3U5Z F;  5DA7 A;  2OD8 A;  5H0T A;  3LX2 A;  5AUJ A;  2IX2 C;  2HIK C;  1IZ5 A;  1U7B A;  1UL1 A;  2HII A;  3TBL A;  3FDS D;  1YYP A;  2IZO C;  3GGR B;  4L60 A;  3P91 A;  3HSL X;  3WGW A;  3I2M X;  3AIX B;  3HI8 A;  3U60 F;  5E0T A;  5IXA A;  1VYJ A;  1U76 A;  4D2G A;  4ZTD A;  3G65 C;  1GE8 A;  3A1J B;  1RWZ A;  1ISQ A;  2NTI C;  5JNE D;  3P83 A;  5B7O A;  2Z0L A;  5A6D A;  3V61 B;  3K4X A;  1RXM A;  3AIZ C;  2IX2 A;  2IO4 A;  2ZVM A;  3V60 B;  2HIK A;  2HII B;  1SXJ F;  5DAI A;  4HK1 A;  3GGR C;  5E0V A;  1B8H A;  1B77 A;  1IZ4 A;  2ZVW A;  3GPN A;  1UD9 A;  5E0U A; 
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