4OUN | Genus

Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	55
sequence length	131
structure length	125
Chain Sequence	FDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKNTDVQTYRYSTAFQALLGYLFLEKKEERLSQLVAEAIQFGTS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 125 atoms

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125 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Sequence-specific cleavage of dsRNA by Mini-III RNase pubmed doi rcsb
molecule keywords	Mini-ribonuclease 3
molecule tags	Hydrolase
source organism	Bacillus subtilis subsp. subtilis
total genus	55
structure length	125
sequence length	131
ec nomenclature	ec 3.1.26.-:
pdb deposition date	2014-02-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00636	Ribonuclease_3	Ribonuclease III domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1520.10	Mainly Alpha	Orthogonal Bundle	Ribonuclease iii, N-terminal Endonuclease Domain; Chain A	Ribonuclease III domain	4ounA00

1I4SA 3O2RA 2FFLA 4M30A 4OUNA 1JFZA 3N3WA 1RC5A 1RC7A 2NUGA 1U61A 1O0WA 1YYWA 1YZ9A 2NUEA 2EB1A 4M2ZA 2A11A 2GSLA 3RV1A 4OOGC 3C4TA 2NUFA 2EZ6A 1YYKA 2QVWA 3RV0A 3C4BA 3O2RB 1YYOA
chains in the Genus database with same CATH superfamily

1I4SA 3O2RA 2FFLA 4M30A 4OUNA 1JFZA 3N3WA 1RC5A 1RC7A 2NUGA 1U61A 1O0WA 1YYWA 1YZ9A 2NUEA 2EB1A 4M2ZA 2A11A 2GSLA 3RV1A 1ZTDA 4OOGC 3C4TA 2NUFA 2EZ6A 1YYKA 2QVWA 3RV0A 3C4BA 3O2RB 1YYOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1I4S A;  3O2R A;  2FFL A;  4M30 A;  4OUN A;  1JFZ A;  3N3W A;  1RC5 A;  1RC7 A;  2NUG A;  1U61 A;  1O0W A;  1YYW A;  1YZ9 A;  2NUE A;  2EB1 A;  4M2Z A;  2A11 A;  2GSL A;  3RV1 A;  4OOG C;  3C4T A;  2NUF A;  2EZ6 A;  1YYK A;  2QVW A;  3RV0 A;  3C4B A;  3O2R B;  1YYO A; 
#chains in the Genus database with same CATH topology
 1I4S A;  3O2R A;  2FFL A;  4M30 A;  4OUN A;  1JFZ A;  3N3W A;  1RC5 A;  1RC7 A;  2NUG A;  1U61 A;  1O0W A;  1YYW A;  1YZ9 A;  2NUE A;  2EB1 A;  4M2Z A;  2A11 A;  2GSL A;  3RV1 A;  1ZTD A;  4OOG C;  3C4T A;  2NUF A;  2EZ6 A;  1YYK A;  2QVW A;  3RV0 A;  3C4B A;  3O2R B;  1YYO A; 
#chains in the Genus database with same CATH homology
 1I4S A;  3O2R A;  2FFL A;  4M30 A;  4OUN A;  1JFZ A;  3N3W A;  1RC5 A;  1RC7 A;  2NUG A;  1U61 A;  1O0W A;  1YYW A;  1YZ9 A;  2NUE A;  2EB1 A;  4M2Z A;  2A11 A;  2GSL A;  3RV1 A;  4OOG C;  3C4T A;  2NUF A;  2EZ6 A;  1YYK A;  2QVW A;  3RV0 A;  3C4B A;  3O2R B;  1YYO A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4OUNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations