4YHR | Genus

Total Genus 53

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	53
sequence length	256
structure length	256
Chain Sequence	MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKFND

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Saccharomyces cerevisiae (strain atcc 204508 / s288c)
publication title	Dead-End Elimination with a Polarizable Force Field Repacks PCNA Models from Low-Resolution X-ray Diffraction into Atomic Resolution Structures rcsb
molecule keywords	Proliferating cell nuclear antigen
total genus	53
structure length	256
sequence length	256
ec nomenclature
pdb deposition date	2015-02-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	4yhrA00

1CZDA 2IJXA 1YYPA 2IZOB 2HIKA 2Z0LA 3A2FB 4L6PA 3VKXA 2ZVMA 2ZVLA 3AIXB 1IZ5A 2ZVKA 1VYMA 2IO4B 3G65A 4D2GA 2ZVWA 5IXAA 1W60A 3F1WA 1UL1A 3LX2A 3I2MX 3A1JC 3FDSD 3HI8A 3U61F 5HACA 5IWDA 4L60A 3AIZC 3TBLA 3GGRB 3P83A 1IZ4A 1U7BA 1ISQA 2IX2A 3U60F 5A6DA 2HIIB 5B7OA 5CFKA 3V62B 3IFVA 5E0TA 4ZTDA 4CS5A 1B8HA 3GGRC 2AVTA 1RWZA 5AUJA 2HIKB 3GPMA 3A1JA 3V60B 1PLRA 2NTIC 1DMLA 1SXJF 1RXMA 5DA7A 5JNED 3U5ZF 3WGWA 1T6LA 1B77A 3AIZA 3G65B 3HSLX 2NTIB 1GE8A 3P91A 2HIIC 3P87A 5IY4A 4HK1A 1PLQA 5H0TA 3AIXA 3V61B 2IO4A 1UD9A 4YHRA 2HIKC 5DAIA 1VYJA 2ZVVA 2IX2B 4TR6A 3G65C 3K4XA 5E0VA 3GGRA 2OD8A 4RJFA 1AXCA 2NTIA 5E0UA 3GPNA 3FDSC 1U76A 2HIIA 2AWAA 1RXZA 3A1JB 2IX2C 3LX1A 2IZOC
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1CZD A;  2IJX A;  1YYP A;  2IZO B;  2HIK A;  2Z0L A;  3A2F B;  4L6P A;  3VKX A;  2ZVM A;  2ZVL A;  3AIX B;  1IZ5 A;  2ZVK A;  1VYM A;  2IO4 B;  3G65 A;  4D2G A;  2ZVW A;  5IXA A;  1W60 A;  3F1W A;  1UL1 A;  3LX2 A;  3I2M X;  3A1J C;  3FDS D;  3HI8 A;  3U61 F;  5HAC A;  5IWD A;  4L60 A;  3AIZ C;  3TBL A;  3GGR B;  3P83 A;  1IZ4 A;  1U7B A;  1ISQ A;  2IX2 A;  3U60 F;  5A6D A;  2HII B;  5B7O A;  5CFK A;  3V62 B;  3IFV A;  5E0T A;  4ZTD A;  4CS5 A;  1B8H A;  3GGR C;  2AVT A;  1RWZ A;  5AUJ A;  2HIK B;  3GPM A;  3A1J A;  3V60 B;  1PLR A;  2NTI C;  1DML A;  1SXJ F;  1RXM A;  5DA7 A;  5JNE D;  3U5Z F;  3WGW A;  1T6L A;  1B77 A;  3AIZ A;  3G65 B;  3HSL X;  2NTI B;  1GE8 A;  3P91 A;  2HII C;  3P87 A;  5IY4 A;  4HK1 A;  1PLQ A;  5H0T A;  3AIX A;  3V61 B;  2IO4 A;  1UD9 A;  4YHR A;  2HIK C;  5DAI A;  1VYJ A;  2ZVV A;  2IX2 B;  4TR6 A;  3G65 C;  3K4X A;  5E0V A;  3GGR A;  2OD8 A;  4RJF A;  1AXC A;  2NTI A;  5E0U A;  3GPN A;  3FDS C;  1U76 A;  2HII A;  2AWA A;  1RXZ A;  3A1J B;  2IX2 C;  3LX1 A;  2IZO C; 
#chains in the Genus database with same CATH topology
 1CZD A;  2IJX A;  1YYP A;  2IZO B;  2HIK A;  2Z0L A;  3A2F B;  4L6P A;  3VKX A;  2ZVM A;  2ZVL A;  3AIX B;  1IZ5 A;  2ZVK A;  1VYM A;  2IO4 B;  3G65 A;  4D2G A;  2ZVW A;  5IXA A;  1W60 A;  3F1W A;  1UL1 A;  3LX2 A;  3I2M X;  3A1J C;  3FDS D;  3HI8 A;  3U61 F;  5HAC A;  5IWD A;  4L60 A;  3AIZ C;  3TBL A;  3GGR B;  3P83 A;  1IZ4 A;  1U7B A;  1ISQ A;  2IX2 A;  3U60 F;  5A6D A;  2HII B;  5B7O A;  5CFK A;  3V62 B;  3IFV A;  5E0T A;  4ZTD A;  4CS5 A;  1B8H A;  3GGR C;  2AVT A;  1RWZ A;  5AUJ A;  2HIK B;  3GPM A;  3A1J A;  3V60 B;  1PLR A;  2NTI C;  1DML A;  1SXJ F;  1RXM A;  5DA7 A;  5JNE D;  3U5Z F;  3WGW A;  1T6L A;  1B77 A;  3AIZ A;  3G65 B;  3HSL X;  2NTI B;  1GE8 A;  3P91 A;  2HII C;  3P87 A;  5IY4 A;  4HK1 A;  1PLQ A;  5H0T A;  3AIX A;  3V61 B;  2IO4 A;  1UD9 A;  4YHR A;  2HIK C;  5DAI A;  1VYJ A;  2ZVV A;  2IX2 B;  4TR6 A;  3G65 C;  3K4X A;  5E0V A;  3GGR A;  2OD8 A;  4RJF A;  1AXC A;  2NTI A;  5E0U A;  3GPN A;  3FDS C;  1U76 A;  2HII A;  2AWA A;  1RXZ A;  3A1J B;  2IX2 C;  3LX1 A;  2IZO C; 
#chains in the Genus database with same CATH homology
 1CZD A;  2IJX A;  1YYP A;  2IZO B;  2HIK A;  2Z0L A;  3A2F B;  4L6P A;  3VKX A;  2ZVM A;  2ZVL A;  3AIX B;  1IZ5 A;  2ZVK A;  1VYM A;  2IO4 B;  3G65 A;  4D2G A;  2ZVW A;  5IXA A;  1W60 A;  3F1W A;  1UL1 A;  3LX2 A;  3I2M X;  3A1J C;  3FDS D;  3HI8 A;  3U61 F;  5HAC A;  5IWD A;  4L60 A;  3AIZ C;  3TBL A;  3GGR B;  3P83 A;  1IZ4 A;  1U7B A;  1ISQ A;  2IX2 A;  3U60 F;  5A6D A;  2HII B;  5B7O A;  5CFK A;  3V62 B;  3IFV A;  5E0T A;  4ZTD A;  4CS5 A;  1B8H A;  3GGR C;  2AVT A;  1RWZ A;  5AUJ A;  2HIK B;  3GPM A;  3A1J A;  3V60 B;  1PLR A;  2NTI C;  1DML A;  1SXJ F;  1RXM A;  5DA7 A;  5JNE D;  3U5Z F;  3WGW A;  1T6L A;  1B77 A;  3AIZ A;  3G65 B;  3HSL X;  2NTI B;  1GE8 A;  3P91 A;  2HII C;  3P87 A;  5IY4 A;  4HK1 A;  1PLQ A;  5H0T A;  3AIX A;  3V61 B;  2IO4 A;  1UD9 A;  4YHR A;  2HIK C;  5DAI A;  1VYJ A;  2ZVV A;  2IX2 B;  4TR6 A;  3G65 C;  3K4X A;  5E0V A;  3GGR A;  2OD8 A;  4RJF A;  1AXC A;  2NTI A;  5E0U A;  3GPN A;  3FDS C;  1U76 A;  2HII A;  2AWA A;  1RXZ A;  3A1J B;  2IX2 C;  3LX1 A;  2IZO C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4YHRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations