4ZTD | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	253
structure length	253
Chain Sequence	FEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication
source organism	Homo sapiens
publication title	TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress. pubmed doi rcsb
molecule keywords	Proliferating cell nuclear antigen
total genus	57
structure length	253
sequence length	253
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2015-05-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	4ztdA00

3AIZA 2IX2A 2IX2B 2HIKB 1DMLA 4L6PA 3U60F 1GE8A 4D2GA 1AXCA 5IXAA 2HIIA 2HIIB 4YHRA 3GPNA 3VKXA 1U76A 1UL1A 3A2FB 3GGRA 3GGRB 2Z0LA 5CFKA 3LX2A 3FDSD 2ZVVA 4ZTDA 3V60B 5JNED 3AIXA 3AIXB 3P83A 4RJFA 1RXZA 2HIKA 1SXJF 1IZ5A 3GPMA 3P91A 3G65B 5IWDA 3G65C 3V61B 3I2MX 3LX1A 2ZVMA 2IJXA 3A1JC 4CS5A 5E0TA 2NTIC 3K4XA 5HACA 2ZVKA 2OD8A 1VYMA 3FDSC 1UD9A 3TBLA 2IO4B 3G65A 1W60A 5IY4A 5DA7A 3A1JA 1B8HA 3A1JB 4HK1A 1YYPA 2AWAA 2NTIB 5E0VA 1PLRA 3WGWA 3V62B 5DAIA 4L60A 1U7BA 2IZOC 2ZVLA 3AIZC 1T6LA 2IX2C 1VYJA 1B77A 3U61F 3HSLX 1CZDA 2AVTA 2IO4A 5A6DA 2HIKC 3HI8A 5E0UA 4TR6A 3P87A 5AUJA 5H0TA 3F1WA 2HIIC 1IZ4A 1RXMA 2NTIA 1ISQA 5B7OA 2ZVWA 3IFVA 1PLQA 3U5ZF 1RWZA 3GGRC 2IZOB
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3AIZ A;  2IX2 A;  2IX2 B;  2HIK B;  1DML A;  4L6P A;  3U60 F;  1GE8 A;  4D2G A;  1AXC A;  5IXA A;  2HII A;  2HII B;  4YHR A;  3GPN A;  3VKX A;  1U76 A;  1UL1 A;  3A2F B;  3GGR A;  3GGR B;  2Z0L A;  5CFK A;  3LX2 A;  3FDS D;  2ZVV A;  4ZTD A;  3V60 B;  5JNE D;  3AIX A;  3AIX B;  3P83 A;  4RJF A;  1RXZ A;  2HIK A;  1SXJ F;  1IZ5 A;  3GPM A;  3P91 A;  3G65 B;  5IWD A;  3G65 C;  3V61 B;  3I2M X;  3LX1 A;  2ZVM A;  2IJX A;  3A1J C;  4CS5 A;  5E0T A;  2NTI C;  3K4X A;  5HAC A;  2ZVK A;  2OD8 A;  1VYM A;  3FDS C;  1UD9 A;  3TBL A;  2IO4 B;  3G65 A;  1W60 A;  5IY4 A;  5DA7 A;  3A1J A;  1B8H A;  3A1J B;  4HK1 A;  1YYP A;  2AWA A;  2NTI B;  5E0V A;  1PLR A;  3WGW A;  3V62 B;  5DAI A;  4L60 A;  1U7B A;  2IZO C;  2ZVL A;  3AIZ C;  1T6L A;  2IX2 C;  1VYJ A;  1B77 A;  3U61 F;  3HSL X;  1CZD A;  2AVT A;  2IO4 A;  5A6D A;  2HIK C;  3HI8 A;  5E0U A;  4TR6 A;  3P87 A;  5AUJ A;  5H0T A;  3F1W A;  2HII C;  1IZ4 A;  1RXM A;  2NTI A;  1ISQ A;  5B7O A;  2ZVW A;  3IFV A;  1PLQ A;  3U5Z F;  1RWZ A;  3GGR C;  2IZO B; 
#chains in the Genus database with same CATH topology
 3AIZ A;  2IX2 A;  2IX2 B;  2HIK B;  1DML A;  4L6P A;  3U60 F;  1GE8 A;  4D2G A;  1AXC A;  5IXA A;  2HII A;  2HII B;  4YHR A;  3GPN A;  3VKX A;  1U76 A;  1UL1 A;  3A2F B;  3GGR A;  3GGR B;  2Z0L A;  5CFK A;  3LX2 A;  3FDS D;  2ZVV A;  4ZTD A;  3V60 B;  5JNE D;  3AIX A;  3AIX B;  3P83 A;  4RJF A;  1RXZ A;  2HIK A;  1SXJ F;  1IZ5 A;  3GPM A;  3P91 A;  3G65 B;  5IWD A;  3G65 C;  3V61 B;  3I2M X;  3LX1 A;  2ZVM A;  2IJX A;  3A1J C;  4CS5 A;  5E0T A;  2NTI C;  3K4X A;  5HAC A;  2ZVK A;  2OD8 A;  1VYM A;  3FDS C;  1UD9 A;  3TBL A;  2IO4 B;  3G65 A;  1W60 A;  5IY4 A;  5DA7 A;  3A1J A;  1B8H A;  3A1J B;  4HK1 A;  1YYP A;  2AWA A;  2NTI B;  5E0V A;  1PLR A;  3WGW A;  3V62 B;  5DAI A;  4L60 A;  1U7B A;  2IZO C;  2ZVL A;  3AIZ C;  1T6L A;  2IX2 C;  1VYJ A;  1B77 A;  3U61 F;  3HSL X;  1CZD A;  2AVT A;  2IO4 A;  5A6D A;  2HIK C;  3HI8 A;  5E0U A;  4TR6 A;  3P87 A;  5AUJ A;  5H0T A;  3F1W A;  2HII C;  1IZ4 A;  1RXM A;  2NTI A;  1ISQ A;  5B7O A;  2ZVW A;  3IFV A;  1PLQ A;  3U5Z F;  1RWZ A;  3GGR C;  2IZO B; 
#chains in the Genus database with same CATH homology
 3AIZ A;  2IX2 A;  2IX2 B;  2HIK B;  1DML A;  4L6P A;  3U60 F;  1GE8 A;  4D2G A;  1AXC A;  5IXA A;  2HII A;  2HII B;  4YHR A;  3GPN A;  3VKX A;  1U76 A;  1UL1 A;  3A2F B;  3GGR A;  3GGR B;  2Z0L A;  5CFK A;  3LX2 A;  3FDS D;  2ZVV A;  4ZTD A;  3V60 B;  5JNE D;  3AIX A;  3AIX B;  3P83 A;  4RJF A;  1RXZ A;  2HIK A;  1SXJ F;  1IZ5 A;  3GPM A;  3P91 A;  3G65 B;  5IWD A;  3G65 C;  3V61 B;  3I2M X;  3LX1 A;  2ZVM A;  2IJX A;  3A1J C;  4CS5 A;  5E0T A;  2NTI C;  3K4X A;  5HAC A;  2ZVK A;  2OD8 A;  1VYM A;  3FDS C;  1UD9 A;  3TBL A;  2IO4 B;  3G65 A;  1W60 A;  5IY4 A;  5DA7 A;  3A1J A;  1B8H A;  3A1J B;  4HK1 A;  1YYP A;  2AWA A;  2NTI B;  5E0V A;  1PLR A;  3WGW A;  3V62 B;  5DAI A;  4L60 A;  1U7B A;  2IZO C;  2ZVL A;  3AIZ C;  1T6L A;  2IX2 C;  1VYJ A;  1B77 A;  3U61 F;  3HSL X;  1CZD A;  2AVT A;  2IO4 A;  5A6D A;  2HIK C;  3HI8 A;  5E0U A;  4TR6 A;  3P87 A;  5AUJ A;  5H0T A;  3F1W A;  2HII C;  1IZ4 A;  1RXM A;  2NTI A;  1ISQ A;  5B7O A;  2ZVW A;  3IFV A;  1PLQ A;  3U5Z F;  1RWZ A;  3GGR C;  2IZO B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ZTDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations