4CS5A

Crystal structure of pcna from litopenaeus vannamei
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
255
structure length
255
Chain Sequence
MFEARLVQGSLLKKVLEAIKDLLNEASWDCADSGIQLQAMDNSHVSLVSLNLRAKGFDKYRCDRNLIMGMNLTSMSKILKCAANDDIITMKAQDNADTVTFMFESPNQEKVSDYEMKLMNLDQEHLGIPETDYACVIKLPSGEFARICRDLSQFGESIVIACTKEGVKFSAAGDIGTANIKLAQTSSVDKEEEAVVIEMQEPVTLTFACRYLNMFTKATPLSPQVSLSMSPDVPLVVEYAIGEIGHIRYFLAPKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Nuclear protein
molecule keywords PROLIFERATING CELL NUCLEAR ANTIGEN
publication title Crystal Structure of the Shrimp Proliferating Cell Nuclear Antigen: Structural Complementarity with Wssv DNA Polymerase Pip-Box.
pubmed doi rcsb
source organism Litopenaeus vannamei
total genus 52
structure length 255
sequence length 255
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 4cs5A00
2IZOB 3A2FB 2ZVMA 3GPMA 2Z0LA 5HACA 2NTIA 4L60A 1PLRA 3AIZA 3GGRA 1U76A 5A6DA 1W60A 4L6PA 5DAIA 5DA7A 2ZVKA 4TR6A 3V62B 3FDSD 3A1JA 2AVTA 5AUJA 3U60F 2AWAA 2HIIA 5IY4A 1IZ5A 3HSLX 1RWZA 2NTIC 3VKXA 3AIZC 3GGRC 3LX1A 1RXZA 2OD8A 1GE8A 1T6LA 1ISQA 3V61B 2HIKB 4HK1A 3A1JC 1B8HA 4CS5A 3P91A 5CFKA 3TBLA 2HIIC 5H0TA 1VYMA 2IZOC 2ZVVA 3AIXB 4YHRA 3G65B 2IX2A 3IFVA 1UL1A 1B77A 1RXMA 5E0UA 4RJFA 5E0VA 3HI8A 5JNED 3I2MX 2HIKA 3U5ZF 3P87A 5IWDA 2ZVLA 3WGWA 3V60B 4D2GA 3U61F 2IX2C 3GPNA 2IO4B 5IXAA 3AIXA 3P83A 3LX2A 5E0TA 1AXCA 3G65A 4ZTDA 3K4XA 2IJXA 1VYJA 3FDSC 2NTIB 1U7BA 2HIKC 1PLQA 3GGRB 1DMLA 3F1WA 1CZDA 1UD9A 1SXJF 3A1JB 2ZVWA 3G65C 1IZ4A 2HIIB 2IX2B 5B7OA 2IO4A 1YYPA
chains in the Genus database with same CATH superfamily
2IZOB 3A2FB 2ZVMA 3GPMA 2Z0LA 5HACA 2NTIA 4L60A 1PLRA 3AIZA 3GGRA 1U76A 5A6DA 1W60A 4L6PA 5DAIA 5DA7A 2ZVKA 4TR6A 3V62B 3FDSD 3A1JA 2AVTA 5AUJA 3U60F 2AWAA 2HIIA 5IY4A 1IZ5A 3HSLX 1RWZA 2NTIC 3VKXA 3AIZC 3GGRC 3LX1A 1RXZA 2OD8A 1GE8A 1T6LA 1ISQA 3V61B 2HIKB 4HK1A 3A1JC 1B8HA 4CS5A 3P91A 5CFKA 3TBLA 2HIIC 5H0TA 1VYMA 2IZOC 2ZVVA 3AIXB 4YHRA 3G65B 2IX2A 3IFVA 1UL1A 1B77A 1RXMA 5E0UA 4RJFA 5E0VA 3HI8A 5JNED 3I2MX 2HIKA 3U5ZF 3P87A 5IWDA 2ZVLA 3WGWA 3V60B 4D2GA 3U61F 2IX2C 3GPNA 2IO4B 5IXAA 3AIXA 3P83A 3LX2A 5E0TA 1AXCA 3G65A 4ZTDA 3K4XA 2IJXA 1VYJA 3FDSC 2NTIB 1U7BA 2HIKC 1PLQA 3GGRB 1DMLA 3F1WA 1CZDA 1UD9A 1SXJF 3A1JB 2ZVWA 3G65C 1IZ4A 2HIIB 2IX2B 5B7OA 2IO4A 1YYPA
chains in the Genus database with same CATH topology
2IZOB 3A2FB 2ZVMA 3GPMA 2Z0LA 5HACA 2NTIA 4L60A 1PLRA 3AIZA 3GGRA 1U76A 5A6DA 1W60A 4L6PA 5DAIA 5DA7A 2ZVKA 4TR6A 3V62B 3FDSD 3A1JA 2AVTA 5AUJA 3U60F 2AWAA 2HIIA 5IY4A 1IZ5A 3HSLX 1RWZA 2NTIC 3VKXA 3AIZC 3GGRC 3LX1A 1RXZA 2OD8A 1GE8A 1T6LA 1ISQA 3V61B 2HIKB 4HK1A 3A1JC 1B8HA 4CS5A 3P91A 5CFKA 3TBLA 2HIIC 5H0TA 1VYMA 2IZOC 2ZVVA 3AIXB 4YHRA 3G65B 2IX2A 3IFVA 1UL1A 1B77A 1RXMA 5E0UA 4RJFA 5E0VA 3HI8A 5JNED 3I2MX 2HIKA 3U5ZF 3P87A 5IWDA 2ZVLA 3WGWA 3V60B 4D2GA 3U61F 2IX2C 3GPNA 2IO4B 5IXAA 3AIXA 3P83A 3LX2A 5E0TA 1AXCA 3G65A 4ZTDA 3K4XA 2IJXA 1VYJA 3FDSC 2NTIB 1U7BA 2HIKC 1PLQA 3GGRB 1DMLA 3F1WA 1CZDA 1UD9A 1SXJF 3A1JB 2ZVWA 3G65C 1IZ4A 2HIIB 2IX2B 5B7OA 2IO4A 1YYPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IZO B;  3A2F B;  2ZVM A;  3GPM A;  2Z0L A;  5HAC A;  2NTI A;  4L60 A;  1PLR A;  3AIZ A;  3GGR A;  1U76 A;  5A6D A;  1W60 A;  4L6P A;  5DAI A;  5DA7 A;  2ZVK A;  4TR6 A;  3V62 B;  3FDS D;  3A1J A;  2AVT A;  5AUJ A;  3U60 F;  2AWA A;  2HII A;  5IY4 A;  1IZ5 A;  3HSL X;  1RWZ A;  2NTI C;  3VKX A;  3AIZ C;  3GGR C;  3LX1 A;  1RXZ A;  2OD8 A;  1GE8 A;  1T6L A;  1ISQ A;  3V61 B;  2HIK B;  4HK1 A;  3A1J C;  1B8H A;  4CS5 A;  3P91 A;  5CFK A;  3TBL A;  2HII C;  5H0T A;  1VYM A;  2IZO C;  2ZVV A;  3AIX B;  4YHR A;  3G65 B;  2IX2 A;  3IFV A;  1UL1 A;  1B77 A;  1RXM A;  5E0U A;  4RJF A;  5E0V A;  3HI8 A;  5JNE D;  3I2M X;  2HIK A;  3U5Z F;  3P87 A;  5IWD A;  2ZVL A;  3WGW A;  3V60 B;  4D2G A;  3U61 F;  2IX2 C;  3GPN A;  2IO4 B;  5IXA A;  3AIX A;  3P83 A;  3LX2 A;  5E0T A;  1AXC A;  3G65 A;  4ZTD A;  3K4X A;  2IJX A;  1VYJ A;  3FDS C;  2NTI B;  1U7B A;  2HIK C;  1PLQ A;  3GGR B;  1DML A;  3F1W A;  1CZD A;  1UD9 A;  1SXJ F;  3A1J B;  2ZVW A;  3G65 C;  1IZ4 A;  2HII B;  2IX2 B;  5B7O A;  2IO4 A;  1YYP A; 
#chains in the Genus database with same CATH topology
 2IZO B;  3A2F B;  2ZVM A;  3GPM A;  2Z0L A;  5HAC A;  2NTI A;  4L60 A;  1PLR A;  3AIZ A;  3GGR A;  1U76 A;  5A6D A;  1W60 A;  4L6P A;  5DAI A;  5DA7 A;  2ZVK A;  4TR6 A;  3V62 B;  3FDS D;  3A1J A;  2AVT A;  5AUJ A;  3U60 F;  2AWA A;  2HII A;  5IY4 A;  1IZ5 A;  3HSL X;  1RWZ A;  2NTI C;  3VKX A;  3AIZ C;  3GGR C;  3LX1 A;  1RXZ A;  2OD8 A;  1GE8 A;  1T6L A;  1ISQ A;  3V61 B;  2HIK B;  4HK1 A;  3A1J C;  1B8H A;  4CS5 A;  3P91 A;  5CFK A;  3TBL A;  2HII C;  5H0T A;  1VYM A;  2IZO C;  2ZVV A;  3AIX B;  4YHR A;  3G65 B;  2IX2 A;  3IFV A;  1UL1 A;  1B77 A;  1RXM A;  5E0U A;  4RJF A;  5E0V A;  3HI8 A;  5JNE D;  3I2M X;  2HIK A;  3U5Z F;  3P87 A;  5IWD A;  2ZVL A;  3WGW A;  3V60 B;  4D2G A;  3U61 F;  2IX2 C;  3GPN A;  2IO4 B;  5IXA A;  3AIX A;  3P83 A;  3LX2 A;  5E0T A;  1AXC A;  3G65 A;  4ZTD A;  3K4X A;  2IJX A;  1VYJ A;  3FDS C;  2NTI B;  1U7B A;  2HIK C;  1PLQ A;  3GGR B;  1DML A;  3F1W A;  1CZD A;  1UD9 A;  1SXJ F;  3A1J B;  2ZVW A;  3G65 C;  1IZ4 A;  2HII B;  2IX2 B;  5B7O A;  2IO4 A;  1YYP A; 
#chains in the Genus database with same CATH homology
 2IZO B;  3A2F B;  2ZVM A;  3GPM A;  2Z0L A;  5HAC A;  2NTI A;  4L60 A;  1PLR A;  3AIZ A;  3GGR A;  1U76 A;  5A6D A;  1W60 A;  4L6P A;  5DAI A;  5DA7 A;  2ZVK A;  4TR6 A;  3V62 B;  3FDS D;  3A1J A;  2AVT A;  5AUJ A;  3U60 F;  2AWA A;  2HII A;  5IY4 A;  1IZ5 A;  3HSL X;  1RWZ A;  2NTI C;  3VKX A;  3AIZ C;  3GGR C;  3LX1 A;  1RXZ A;  2OD8 A;  1GE8 A;  1T6L A;  1ISQ A;  3V61 B;  2HIK B;  4HK1 A;  3A1J C;  1B8H A;  4CS5 A;  3P91 A;  5CFK A;  3TBL A;  2HII C;  5H0T A;  1VYM A;  2IZO C;  2ZVV A;  3AIX B;  4YHR A;  3G65 B;  2IX2 A;  3IFV A;  1UL1 A;  1B77 A;  1RXM A;  5E0U A;  4RJF A;  5E0V A;  3HI8 A;  5JNE D;  3I2M X;  2HIK A;  3U5Z F;  3P87 A;  5IWD A;  2ZVL A;  3WGW A;  3V60 B;  4D2G A;  3U61 F;  2IX2 C;  3GPN A;  2IO4 B;  5IXA A;  3AIX A;  3P83 A;  3LX2 A;  5E0T A;  1AXC A;  3G65 A;  4ZTD A;  3K4X A;  2IJX A;  1VYJ A;  3FDS C;  2NTI B;  1U7B A;  2HIK C;  1PLQ A;  3GGR B;  1DML A;  3F1W A;  1CZD A;  1UD9 A;  1SXJ F;  3A1J B;  2ZVW A;  3G65 C;  1IZ4 A;  2HII B;  2IX2 B;  5B7O A;  2IO4 A;  1YYP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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