4HK1A

Crystal structure of pcna from drosophila melanogaster
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
257
structure length
243
Chain Sequence
GDPMFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQNADTVTIMFESQEKVSDYEMKLMNLDQEHLGIPSVVRMPAMEFARICRDLAQFSESVVICCTKGVKFSASGDVGTANIKLAQTEEEAVIIEMQEPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYYLAPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Proliferating cell nuclear antigen
publication title Structure of PCNA from Drosophila melanogaster.
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 54
structure length 243
sequence length 257
ec nomenclature
pdb deposition date 2012-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 4hk1A00
1UD9A 3VKXA 2IX2B 2NTIB 3HSLX 5H0TA 4D2GA 5IY4A 5JNED 2ZVKA 5AUJA 2IJXA 3TBLA 5B7OA 1DMLA 3HI8A 2IX2A 3AIXB 4TR6A 1GE8A 2IO4B 1B77A 5HACA 3V60B 4L6PA 5E0TA 1IZ4A 2ZVLA 2IZOC 1W60A 3WGWA 3F1WA 1ISQA 2ZVWA 1RXZA 3AIZA 1UL1A 2IZOB 3GPNA 1RWZA 2AWAA 2IO4A 3FDSC 3G65A 4L60A 2HIIC 1B8HA 1VYJA 3U60F 3LX2A 3P91A 1CZDA 1IZ5A 2NTIA 2HIIB 3FDSD 5CFKA 1VYMA 3A1JC 2ZVVA 4YHRA 3U5ZF 2HIKC 3GGRC 1T6LA 3A1JB 3AIXA 5E0UA 1RXMA 1PLQA 2HIKB 3GGRB 3LX1A 2Z0LA 3V62B 3A2FB 5E0VA 1U76A 3K4XA 5DA7A 5IWDA 2OD8A 4ZTDA 5A6DA 3V61B 2ZVMA 3GPMA 3IFVA 1SXJF 1U7BA 4CS5A 3P83A 3AIZC 3I2MX 2HIIA 4RJFA 4HK1A 3P87A 3G65C 5DAIA 5IXAA 3U61F 1PLRA 1YYPA 1AXCA 3G65B 2IX2C 3A1JA 2NTIC 2AVTA 2HIKA 3GGRA
chains in the Genus database with same CATH superfamily
1UD9A 3VKXA 2IX2B 2NTIB 3HSLX 5H0TA 4D2GA 5IY4A 5JNED 2ZVKA 5AUJA 2IJXA 3TBLA 5B7OA 1DMLA 3HI8A 2IX2A 3AIXB 4TR6A 1GE8A 2IO4B 1B77A 5HACA 3V60B 4L6PA 5E0TA 1IZ4A 2ZVLA 2IZOC 1W60A 3WGWA 3F1WA 1ISQA 2ZVWA 1RXZA 3AIZA 1UL1A 2IZOB 3GPNA 1RWZA 2AWAA 2IO4A 3FDSC 3G65A 4L60A 2HIIC 1B8HA 1VYJA 3U60F 3LX2A 3P91A 1CZDA 1IZ5A 2NTIA 2HIIB 3FDSD 5CFKA 1VYMA 3A1JC 2ZVVA 4YHRA 3U5ZF 2HIKC 3GGRC 1T6LA 3A1JB 3AIXA 5E0UA 1RXMA 1PLQA 2HIKB 3GGRB 3LX1A 2Z0LA 3V62B 3A2FB 5E0VA 1U76A 3K4XA 5DA7A 5IWDA 2OD8A 4ZTDA 5A6DA 3V61B 2ZVMA 3GPMA 3IFVA 1SXJF 1U7BA 4CS5A 3P83A 3AIZC 3I2MX 2HIIA 4RJFA 4HK1A 3P87A 3G65C 5DAIA 5IXAA 3U61F 1PLRA 1YYPA 1AXCA 3G65B 2IX2C 3A1JA 2NTIC 2AVTA 2HIKA 3GGRA
chains in the Genus database with same CATH topology
1UD9A 3VKXA 2IX2B 2NTIB 3HSLX 5H0TA 4D2GA 5IY4A 5JNED 2ZVKA 5AUJA 2IJXA 3TBLA 5B7OA 1DMLA 3HI8A 2IX2A 3AIXB 4TR6A 1GE8A 2IO4B 1B77A 5HACA 3V60B 4L6PA 5E0TA 1IZ4A 2ZVLA 2IZOC 1W60A 3WGWA 3F1WA 1ISQA 2ZVWA 1RXZA 3AIZA 1UL1A 2IZOB 3GPNA 1RWZA 2AWAA 2IO4A 3FDSC 3G65A 4L60A 2HIIC 1B8HA 1VYJA 3U60F 3LX2A 3P91A 1CZDA 1IZ5A 2NTIA 2HIIB 3FDSD 5CFKA 1VYMA 3A1JC 2ZVVA 4YHRA 3U5ZF 2HIKC 3GGRC 1T6LA 3A1JB 3AIXA 5E0UA 1RXMA 1PLQA 2HIKB 3GGRB 3LX1A 2Z0LA 3V62B 3A2FB 5E0VA 1U76A 3K4XA 5DA7A 5IWDA 2OD8A 4ZTDA 5A6DA 3V61B 2ZVMA 3GPMA 3IFVA 1SXJF 1U7BA 4CS5A 3P83A 3AIZC 3I2MX 2HIIA 4RJFA 4HK1A 3P87A 3G65C 5DAIA 5IXAA 3U61F 1PLRA 1YYPA 1AXCA 3G65B 2IX2C 3A1JA 2NTIC 2AVTA 2HIKA 3GGRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UD9 A;  3VKX A;  2IX2 B;  2NTI B;  3HSL X;  5H0T A;  4D2G A;  5IY4 A;  5JNE D;  2ZVK A;  5AUJ A;  2IJX A;  3TBL A;  5B7O A;  1DML A;  3HI8 A;  2IX2 A;  3AIX B;  4TR6 A;  1GE8 A;  2IO4 B;  1B77 A;  5HAC A;  3V60 B;  4L6P A;  5E0T A;  1IZ4 A;  2ZVL A;  2IZO C;  1W60 A;  3WGW A;  3F1W A;  1ISQ A;  2ZVW A;  1RXZ A;  3AIZ A;  1UL1 A;  2IZO B;  3GPN A;  1RWZ A;  2AWA A;  2IO4 A;  3FDS C;  3G65 A;  4L60 A;  2HII C;  1B8H A;  1VYJ A;  3U60 F;  3LX2 A;  3P91 A;  1CZD A;  1IZ5 A;  2NTI A;  2HII B;  3FDS D;  5CFK A;  1VYM A;  3A1J C;  2ZVV A;  4YHR A;  3U5Z F;  2HIK C;  3GGR C;  1T6L A;  3A1J B;  3AIX A;  5E0U A;  1RXM A;  1PLQ A;  2HIK B;  3GGR B;  3LX1 A;  2Z0L A;  3V62 B;  3A2F B;  5E0V A;  1U76 A;  3K4X A;  5DA7 A;  5IWD A;  2OD8 A;  4ZTD A;  5A6D A;  3V61 B;  2ZVM A;  3GPM A;  3IFV A;  1SXJ F;  1U7B A;  4CS5 A;  3P83 A;  3AIZ C;  3I2M X;  2HII A;  4RJF A;  4HK1 A;  3P87 A;  3G65 C;  5DAI A;  5IXA A;  3U61 F;  1PLR A;  1YYP A;  1AXC A;  3G65 B;  2IX2 C;  3A1J A;  2NTI C;  2AVT A;  2HIK A;  3GGR A; 
#chains in the Genus database with same CATH topology
 1UD9 A;  3VKX A;  2IX2 B;  2NTI B;  3HSL X;  5H0T A;  4D2G A;  5IY4 A;  5JNE D;  2ZVK A;  5AUJ A;  2IJX A;  3TBL A;  5B7O A;  1DML A;  3HI8 A;  2IX2 A;  3AIX B;  4TR6 A;  1GE8 A;  2IO4 B;  1B77 A;  5HAC A;  3V60 B;  4L6P A;  5E0T A;  1IZ4 A;  2ZVL A;  2IZO C;  1W60 A;  3WGW A;  3F1W A;  1ISQ A;  2ZVW A;  1RXZ A;  3AIZ A;  1UL1 A;  2IZO B;  3GPN A;  1RWZ A;  2AWA A;  2IO4 A;  3FDS C;  3G65 A;  4L60 A;  2HII C;  1B8H A;  1VYJ A;  3U60 F;  3LX2 A;  3P91 A;  1CZD A;  1IZ5 A;  2NTI A;  2HII B;  3FDS D;  5CFK A;  1VYM A;  3A1J C;  2ZVV A;  4YHR A;  3U5Z F;  2HIK C;  3GGR C;  1T6L A;  3A1J B;  3AIX A;  5E0U A;  1RXM A;  1PLQ A;  2HIK B;  3GGR B;  3LX1 A;  2Z0L A;  3V62 B;  3A2F B;  5E0V A;  1U76 A;  3K4X A;  5DA7 A;  5IWD A;  2OD8 A;  4ZTD A;  5A6D A;  3V61 B;  2ZVM A;  3GPM A;  3IFV A;  1SXJ F;  1U7B A;  4CS5 A;  3P83 A;  3AIZ C;  3I2M X;  2HII A;  4RJF A;  4HK1 A;  3P87 A;  3G65 C;  5DAI A;  5IXA A;  3U61 F;  1PLR A;  1YYP A;  1AXC A;  3G65 B;  2IX2 C;  3A1J A;  2NTI C;  2AVT A;  2HIK A;  3GGR A; 
#chains in the Genus database with same CATH homology
 1UD9 A;  3VKX A;  2IX2 B;  2NTI B;  3HSL X;  5H0T A;  4D2G A;  5IY4 A;  5JNE D;  2ZVK A;  5AUJ A;  2IJX A;  3TBL A;  5B7O A;  1DML A;  3HI8 A;  2IX2 A;  3AIX B;  4TR6 A;  1GE8 A;  2IO4 B;  1B77 A;  5HAC A;  3V60 B;  4L6P A;  5E0T A;  1IZ4 A;  2ZVL A;  2IZO C;  1W60 A;  3WGW A;  3F1W A;  1ISQ A;  2ZVW A;  1RXZ A;  3AIZ A;  1UL1 A;  2IZO B;  3GPN A;  1RWZ A;  2AWA A;  2IO4 A;  3FDS C;  3G65 A;  4L60 A;  2HII C;  1B8H A;  1VYJ A;  3U60 F;  3LX2 A;  3P91 A;  1CZD A;  1IZ5 A;  2NTI A;  2HII B;  3FDS D;  5CFK A;  1VYM A;  3A1J C;  2ZVV A;  4YHR A;  3U5Z F;  2HIK C;  3GGR C;  1T6L A;  3A1J B;  3AIX A;  5E0U A;  1RXM A;  1PLQ A;  2HIK B;  3GGR B;  3LX1 A;  2Z0L A;  3V62 B;  3A2F B;  5E0V A;  1U76 A;  3K4X A;  5DA7 A;  5IWD A;  2OD8 A;  4ZTD A;  5A6D A;  3V61 B;  2ZVM A;  3GPM A;  3IFV A;  1SXJ F;  1U7B A;  4CS5 A;  3P83 A;  3AIZ C;  3I2M X;  2HII A;  4RJF A;  4HK1 A;  3P87 A;  3G65 C;  5DAI A;  5IXA A;  3U61 F;  1PLR A;  1YYP A;  1AXC A;  3G65 B;  2IX2 C;  3A1J A;  2NTI C;  2AVT A;  2HIK A;  3GGR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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