5A6D | Genus

Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	246
structure length	246
Chain Sequence	PFEIVFDGAKEFADLIATASNLIDEAAFKITEEGVSMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDHFKKILKRGKSKDTLILRKGDENFLEITFEGTAKRTFRLPLIDVEELELELPELPFTAKVVLLGEVLKEAIKDASLVSDSLKFIAKEDEFTMKAEGETNEVEIKLTLEDEGLLDLEVEEETRSAYGISYLADMVKGIGKADEVTLRFGTEMPLQMDYFIRDEGKLTFLLAPRV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 246 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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246 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Thermococcus gammatolerans
publication title	Cloning, recombinant production and crystallographic structure of Proliferating Cell Nuclear Antigen from radioresistant archaeon Thermococcus gammatolerans. pubmed doi rcsb
molecule keywords	DNA POLYMERASE SLIDING CLAMP
total genus	60
structure length	246
sequence length	246
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-06-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	5a6dA00

3A2FB 3AIXA 1DMLA 1U76A 2Z0LA 3G65C 2HIIC 5H0TA 2ZVLA 3G65B 2ZVKA 2HIIB 2IZOC 2OD8A 3P83A 5DA7A 1IZ4A 3AIXB 1RXMA 1UL1A 3FDSC 2AWAA 3WGWA 2ZVWA 5HACA 1B77A 4TR6A 2IZOB 2ZVMA 1AXCA 3F1WA 2ZVVA 5E0UA 3AIZA 3U60F 5CFKA 2IX2A 1GE8A 5IWDA 1CZDA 3A1JA 3VKXA 5AUJA 1PLQA 3U61F 5B7OA 3AIZC 2IX2C 1YYPA 5A6DA 5JNED 2IJXA 3A1JC 2IO4A 4CS5A 3HI8A 5E0TA 1IZ5A 2HIKA 2IX2B 4ZTDA 3FDSD 3GGRA 5IXAA 3P87A 1UD9A 3A1JB 1U7BA 2NTIA 3HSLX 4YHRA 5DAIA 1RWZA 1W60A 2HIKC 3GGRC 2NTIC 1SXJF 3V60B 4RJFA 2IO4B 3I2MX 5IY4A 3GPMA 1VYJA 3GPNA 1ISQA 3V61B 3LX1A 3V62B 2HIKB 3GGRB 4HK1A 4L6PA 2NTIB 4D2GA 1T6LA 1VYMA 3K4XA 3LX2A 5E0VA 1B8HA 2AVTA 3P91A 1RXZA 3G65A 3U5ZF 3TBLA 3IFVA 2HIIA 4L60A 1PLRA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3A2F B;  3AIX A;  1DML A;  1U76 A;  2Z0L A;  3G65 C;  2HII C;  5H0T A;  2ZVL A;  3G65 B;  2ZVK A;  2HII B;  2IZO C;  2OD8 A;  3P83 A;  5DA7 A;  1IZ4 A;  3AIX B;  1RXM A;  1UL1 A;  3FDS C;  2AWA A;  3WGW A;  2ZVW A;  5HAC A;  1B77 A;  4TR6 A;  2IZO B;  2ZVM A;  1AXC A;  3F1W A;  2ZVV A;  5E0U A;  3AIZ A;  3U60 F;  5CFK A;  2IX2 A;  1GE8 A;  5IWD A;  1CZD A;  3A1J A;  3VKX A;  5AUJ A;  1PLQ A;  3U61 F;  5B7O A;  3AIZ C;  2IX2 C;  1YYP A;  5A6D A;  5JNE D;  2IJX A;  3A1J C;  2IO4 A;  4CS5 A;  3HI8 A;  5E0T A;  1IZ5 A;  2HIK A;  2IX2 B;  4ZTD A;  3FDS D;  3GGR A;  5IXA A;  3P87 A;  1UD9 A;  3A1J B;  1U7B A;  2NTI A;  3HSL X;  4YHR A;  5DAI A;  1RWZ A;  1W60 A;  2HIK C;  3GGR C;  2NTI C;  1SXJ F;  3V60 B;  4RJF A;  2IO4 B;  3I2M X;  5IY4 A;  3GPM A;  1VYJ A;  3GPN A;  1ISQ A;  3V61 B;  3LX1 A;  3V62 B;  2HIK B;  3GGR B;  4HK1 A;  4L6P A;  2NTI B;  4D2G A;  1T6L A;  1VYM A;  3K4X A;  3LX2 A;  5E0V A;  1B8H A;  2AVT A;  3P91 A;  1RXZ A;  3G65 A;  3U5Z F;  3TBL A;  3IFV A;  2HII A;  4L60 A;  1PLR A; 
#chains in the Genus database with same CATH topology
 3A2F B;  3AIX A;  1DML A;  1U76 A;  2Z0L A;  3G65 C;  2HII C;  5H0T A;  2ZVL A;  3G65 B;  2ZVK A;  2HII B;  2IZO C;  2OD8 A;  3P83 A;  5DA7 A;  1IZ4 A;  3AIX B;  1RXM A;  1UL1 A;  3FDS C;  2AWA A;  3WGW A;  2ZVW A;  5HAC A;  1B77 A;  4TR6 A;  2IZO B;  2ZVM A;  1AXC A;  3F1W A;  2ZVV A;  5E0U A;  3AIZ A;  3U60 F;  5CFK A;  2IX2 A;  1GE8 A;  5IWD A;  1CZD A;  3A1J A;  3VKX A;  5AUJ A;  1PLQ A;  3U61 F;  5B7O A;  3AIZ C;  2IX2 C;  1YYP A;  5A6D A;  5JNE D;  2IJX A;  3A1J C;  2IO4 A;  4CS5 A;  3HI8 A;  5E0T A;  1IZ5 A;  2HIK A;  2IX2 B;  4ZTD A;  3FDS D;  3GGR A;  5IXA A;  3P87 A;  1UD9 A;  3A1J B;  1U7B A;  2NTI A;  3HSL X;  4YHR A;  5DAI A;  1RWZ A;  1W60 A;  2HIK C;  3GGR C;  2NTI C;  1SXJ F;  3V60 B;  4RJF A;  2IO4 B;  3I2M X;  5IY4 A;  3GPM A;  1VYJ A;  3GPN A;  1ISQ A;  3V61 B;  3LX1 A;  3V62 B;  2HIK B;  3GGR B;  4HK1 A;  4L6P A;  2NTI B;  4D2G A;  1T6L A;  1VYM A;  3K4X A;  3LX2 A;  5E0V A;  1B8H A;  2AVT A;  3P91 A;  1RXZ A;  3G65 A;  3U5Z F;  3TBL A;  3IFV A;  2HII A;  4L60 A;  1PLR A; 
#chains in the Genus database with same CATH homology
 3A2F B;  3AIX A;  1DML A;  1U76 A;  2Z0L A;  3G65 C;  2HII C;  5H0T A;  2ZVL A;  3G65 B;  2ZVK A;  2HII B;  2IZO C;  2OD8 A;  3P83 A;  5DA7 A;  1IZ4 A;  3AIX B;  1RXM A;  1UL1 A;  3FDS C;  2AWA A;  3WGW A;  2ZVW A;  5HAC A;  1B77 A;  4TR6 A;  2IZO B;  2ZVM A;  1AXC A;  3F1W A;  2ZVV A;  5E0U A;  3AIZ A;  3U60 F;  5CFK A;  2IX2 A;  1GE8 A;  5IWD A;  1CZD A;  3A1J A;  3VKX A;  5AUJ A;  1PLQ A;  3U61 F;  5B7O A;  3AIZ C;  2IX2 C;  1YYP A;  5A6D A;  5JNE D;  2IJX A;  3A1J C;  2IO4 A;  4CS5 A;  3HI8 A;  5E0T A;  1IZ5 A;  2HIK A;  2IX2 B;  4ZTD A;  3FDS D;  3GGR A;  5IXA A;  3P87 A;  1UD9 A;  3A1J B;  1U7B A;  2NTI A;  3HSL X;  4YHR A;  5DAI A;  1RWZ A;  1W60 A;  2HIK C;  3GGR C;  2NTI C;  1SXJ F;  3V60 B;  4RJF A;  2IO4 B;  3I2M X;  5IY4 A;  3GPM A;  1VYJ A;  3GPN A;  1ISQ A;  3V61 B;  3LX1 A;  3V62 B;  2HIK B;  3GGR B;  4HK1 A;  4L6P A;  2NTI B;  4D2G A;  1T6L A;  1VYM A;  3K4X A;  3LX2 A;  5E0V A;  1B8H A;  2AVT A;  3P91 A;  1RXZ A;  3G65 A;  3U5Z F;  3TBL A;  3IFV A;  2HII A;  4L60 A;  1PLR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5A6DA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations