5H0T | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	289
structure length	248
Chain Sequence	MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 248 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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248 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Leishmania donovani
publication title	Structure and binding studies of proliferating cell nuclear antigen from Leishmania donovani. pubmed doi rcsb
molecule keywords	Proliferating cell nuclear antigen
total genus	56
structure length	248
sequence length	289
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2016-10-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	5h0tA00

3P91A 5JNED 2IX2C 3U61F 1RWZA 3V62B 3HSLX 1GE8A 3K4XA 2NTIA 2IZOC 5AUJA 3G65B 2HIIB 2ZVMA 3GGRB 1VYMA 2IX2A 3A2FB 1W60A 2AVTA 2IO4B 3F1WA 4YHRA 3FDSC 1DMLA 3AIXA 4L60A 1RXZA 5HACA 5E0VA 2HIKB 1U7BA 1VYJA 4ZTDA 4D2GA 2AWAA 1AXCA 3G65A 5E0TA 3P87A 3GGRA 1U76A 3U60F 2OD8A 3G65C 2HIIC 3GGRC 5E0UA 1CZDA 4RJFA 2IO4A 4TR6A 2IJXA 2ZVWA 1B8HA 4L6PA 3IFVA 2Z0LA 5H0TA 3A1JB 1YYPA 3V61B 3FDSD 1RXMA 2NTIB 5DAIA 3I2MX 5A6DA 1IZ5A 1UD9A 3AIZC 2IX2B 2HIIA 1ISQA 4HK1A 3TBLA 3VKXA 1PLRA 1IZ4A 3LX2A 5IXAA 5IY4A 1SXJF 5DA7A 5IWDA 3AIXB 1UL1A 3WGWA 3P83A 2IZOB 3A1JA 3GPNA 3HI8A 2HIKA 3AIZA 5B7OA 3A1JC 5CFKA 3LX1A 1B77A 2ZVLA 4CS5A 3V60B 1PLQA 2NTIC 2HIKC 3GPMA 3U5ZF 1T6LA 2ZVVA 2ZVKA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3P91 A;  5JNE D;  2IX2 C;  3U61 F;  1RWZ A;  3V62 B;  3HSL X;  1GE8 A;  3K4X A;  2NTI A;  2IZO C;  5AUJ A;  3G65 B;  2HII B;  2ZVM A;  3GGR B;  1VYM A;  2IX2 A;  3A2F B;  1W60 A;  2AVT A;  2IO4 B;  3F1W A;  4YHR A;  3FDS C;  1DML A;  3AIX A;  4L60 A;  1RXZ A;  5HAC A;  5E0V A;  2HIK B;  1U7B A;  1VYJ A;  4ZTD A;  4D2G A;  2AWA A;  1AXC A;  3G65 A;  5E0T A;  3P87 A;  3GGR A;  1U76 A;  3U60 F;  2OD8 A;  3G65 C;  2HII C;  3GGR C;  5E0U A;  1CZD A;  4RJF A;  2IO4 A;  4TR6 A;  2IJX A;  2ZVW A;  1B8H A;  4L6P A;  3IFV A;  2Z0L A;  5H0T A;  3A1J B;  1YYP A;  3V61 B;  3FDS D;  1RXM A;  2NTI B;  5DAI A;  3I2M X;  5A6D A;  1IZ5 A;  1UD9 A;  3AIZ C;  2IX2 B;  2HII A;  1ISQ A;  4HK1 A;  3TBL A;  3VKX A;  1PLR A;  1IZ4 A;  3LX2 A;  5IXA A;  5IY4 A;  1SXJ F;  5DA7 A;  5IWD A;  3AIX B;  1UL1 A;  3WGW A;  3P83 A;  2IZO B;  3A1J A;  3GPN A;  3HI8 A;  2HIK A;  3AIZ A;  5B7O A;  3A1J C;  5CFK A;  3LX1 A;  1B77 A;  2ZVL A;  4CS5 A;  3V60 B;  1PLQ A;  2NTI C;  2HIK C;  3GPM A;  3U5Z F;  1T6L A;  2ZVV A;  2ZVK A; 
#chains in the Genus database with same CATH topology
 3P91 A;  5JNE D;  2IX2 C;  3U61 F;  1RWZ A;  3V62 B;  3HSL X;  1GE8 A;  3K4X A;  2NTI A;  2IZO C;  5AUJ A;  3G65 B;  2HII B;  2ZVM A;  3GGR B;  1VYM A;  2IX2 A;  3A2F B;  1W60 A;  2AVT A;  2IO4 B;  3F1W A;  4YHR A;  3FDS C;  1DML A;  3AIX A;  4L60 A;  1RXZ A;  5HAC A;  5E0V A;  2HIK B;  1U7B A;  1VYJ A;  4ZTD A;  4D2G A;  2AWA A;  1AXC A;  3G65 A;  5E0T A;  3P87 A;  3GGR A;  1U76 A;  3U60 F;  2OD8 A;  3G65 C;  2HII C;  3GGR C;  5E0U A;  1CZD A;  4RJF A;  2IO4 A;  4TR6 A;  2IJX A;  2ZVW A;  1B8H A;  4L6P A;  3IFV A;  2Z0L A;  5H0T A;  3A1J B;  1YYP A;  3V61 B;  3FDS D;  1RXM A;  2NTI B;  5DAI A;  3I2M X;  5A6D A;  1IZ5 A;  1UD9 A;  3AIZ C;  2IX2 B;  2HII A;  1ISQ A;  4HK1 A;  3TBL A;  3VKX A;  1PLR A;  1IZ4 A;  3LX2 A;  5IXA A;  5IY4 A;  1SXJ F;  5DA7 A;  5IWD A;  3AIX B;  1UL1 A;  3WGW A;  3P83 A;  2IZO B;  3A1J A;  3GPN A;  3HI8 A;  2HIK A;  3AIZ A;  5B7O A;  3A1J C;  5CFK A;  3LX1 A;  1B77 A;  2ZVL A;  4CS5 A;  3V60 B;  1PLQ A;  2NTI C;  2HIK C;  3GPM A;  3U5Z F;  1T6L A;  2ZVV A;  2ZVK A; 
#chains in the Genus database with same CATH homology
 3P91 A;  5JNE D;  2IX2 C;  3U61 F;  1RWZ A;  3V62 B;  3HSL X;  1GE8 A;  3K4X A;  2NTI A;  2IZO C;  5AUJ A;  3G65 B;  2HII B;  2ZVM A;  3GGR B;  1VYM A;  2IX2 A;  3A2F B;  1W60 A;  2AVT A;  2IO4 B;  3F1W A;  4YHR A;  3FDS C;  1DML A;  3AIX A;  4L60 A;  1RXZ A;  5HAC A;  5E0V A;  2HIK B;  1U7B A;  1VYJ A;  4ZTD A;  4D2G A;  2AWA A;  1AXC A;  3G65 A;  5E0T A;  3P87 A;  3GGR A;  1U76 A;  3U60 F;  2OD8 A;  3G65 C;  2HII C;  3GGR C;  5E0U A;  1CZD A;  4RJF A;  2IO4 A;  4TR6 A;  2IJX A;  2ZVW A;  1B8H A;  4L6P A;  3IFV A;  2Z0L A;  5H0T A;  3A1J B;  1YYP A;  3V61 B;  3FDS D;  1RXM A;  2NTI B;  5DAI A;  3I2M X;  5A6D A;  1IZ5 A;  1UD9 A;  3AIZ C;  2IX2 B;  2HII A;  1ISQ A;  4HK1 A;  3TBL A;  3VKX A;  1PLR A;  1IZ4 A;  3LX2 A;  5IXA A;  5IY4 A;  1SXJ F;  5DA7 A;  5IWD A;  3AIX B;  1UL1 A;  3WGW A;  3P83 A;  2IZO B;  3A1J A;  3GPN A;  3HI8 A;  2HIK A;  3AIZ A;  5B7O A;  3A1J C;  5CFK A;  3LX1 A;  1B77 A;  2ZVL A;  4CS5 A;  3V60 B;  1PLQ A;  2NTI C;  2HIK C;  3GPM A;  3U5Z F;  1T6L A;  2ZVV A;  2ZVK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5H0TA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations