5HACA

Crystal structure of proliferating cell nuclear antigen from leishmania donovani at 2.95 a resolution
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
296
structure length
260
Chain Sequence
LVPRGSHMLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-6)AH1 (9-21)TI3 (83-86)S2 (25-31)AH2 (72-81)TI1 (31-34)S3 (34-40)S5 (59-60)TI2 (41-44)TVIII2 (57-60)3H1 (54-56)S4 (46-53)TVIII3 (255-258)3H2 (250-253)TIV2 (62-65)AH4 (242-249)S6 (66-71)S7 (87-92)TIV3 (93-96)S9 (111-119)S8 (98-104)TI4 (105-108)AH3 (141-152)S11 (157-162)TIV5 (163-166)S13 (176-177)S12 (167-173)TIV6 (173-176)TIV7 (189-228)S14 (180-182)S15 (229-231)S17 (240-241)S16 (236-237)TVIII1 (6-9)TIV4 (152-155)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Leishmania donovani
publication title Crystal structure of Proliferating Cell Nuclear Antigen from Leishmania donovani at 2.95 A resolution
rcsb
molecule keywords Proliferating cell nuclear antigen
total genus 50
structure length 260
sequence length 296
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2015-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 5hacA00
1B77A 4CS5A 2IX2A 3AIXB 2HIIA 2IX2C 1UD9A 5H0TA 2HIIC 3GGRA 1VYJA 3FDSC 3V60B 2IX2B 3GGRC 5E0TA 2HIIB 1AXCA 2IJXA 2ZVVA 5DAIA 3VKXA 3GGRB 4L60A 3GPMA 5JNED 3U5ZF 1VYMA 2OD8A 1T6LA 3LX2A 1YYPA 1DMLA 5IXAA 4ZTDA 1GE8A 2HIKA 3IFVA 3U60F 4D2GA 2IZOB 3WGWA 1U7BA 2HIKB 1IZ4A 4L6PA 1PLRA 3G65A 3G65C 1B8HA 1PLQA 2ZVWA 3K4XA 3LX1A 2NTIA 3G65B 3TBLA 3P87A 2NTIB 3V61B 1RXMA 2ZVMA 2AVTA 5DA7A 2IZOC 1RWZA 1IZ5A 1UL1A 2HIKC 3AIZA 5IY4A 2ZVKA 1CZDA 3A1JA 4HK1A 4RJFA 4YHRA 3GPNA 1W60A 3A1JB 3V62B 2ZVLA 2IO4A 3HSLX 1ISQA 2NTIC 1U76A 5AUJA 5HACA 5CFKA 1SXJF 3P91A 4TR6A 2IO4B 3A2FB 5E0VA 5A6DA 3P83A 2AWAA 5IWDA 2Z0LA 3HI8A 3FDSD 3AIZC 3I2MX 3U61F 3A1JC 1RXZA 5B7OA 3F1WA 5E0UA 3AIXA
chains in the Genus database with same CATH superfamily
1B77A 4CS5A 2IX2A 3AIXB 2HIIA 2IX2C 1UD9A 5H0TA 2HIIC 3GGRA 1VYJA 3FDSC 3V60B 2IX2B 3GGRC 5E0TA 2HIIB 1AXCA 2IJXA 2ZVVA 5DAIA 3VKXA 3GGRB 4L60A 3GPMA 5JNED 3U5ZF 1VYMA 2OD8A 1T6LA 3LX2A 1YYPA 1DMLA 5IXAA 4ZTDA 1GE8A 2HIKA 3IFVA 3U60F 4D2GA 2IZOB 3WGWA 1U7BA 2HIKB 1IZ4A 4L6PA 1PLRA 3G65A 3G65C 1B8HA 1PLQA 2ZVWA 3K4XA 3LX1A 2NTIA 3G65B 3TBLA 3P87A 2NTIB 3V61B 1RXMA 2ZVMA 2AVTA 5DA7A 2IZOC 1RWZA 1IZ5A 1UL1A 2HIKC 3AIZA 5IY4A 2ZVKA 1CZDA 3A1JA 4HK1A 4RJFA 4YHRA 3GPNA 1W60A 3A1JB 3V62B 2ZVLA 2IO4A 3HSLX 1ISQA 2NTIC 1U76A 5AUJA 5HACA 5CFKA 1SXJF 3P91A 4TR6A 2IO4B 3A2FB 5E0VA 5A6DA 3P83A 2AWAA 5IWDA 2Z0LA 3HI8A 3FDSD 3AIZC 3I2MX 3U61F 3A1JC 1RXZA 5B7OA 3F1WA 5E0UA 3AIXA
chains in the Genus database with same CATH topology
1B77A 4CS5A 2IX2A 3AIXB 2HIIA 2IX2C 1UD9A 5H0TA 2HIIC 3GGRA 1VYJA 3FDSC 3V60B 2IX2B 3GGRC 5E0TA 2HIIB 1AXCA 2IJXA 2ZVVA 5DAIA 3VKXA 3GGRB 4L60A 3GPMA 5JNED 3U5ZF 1VYMA 2OD8A 1T6LA 3LX2A 1YYPA 1DMLA 5IXAA 4ZTDA 1GE8A 2HIKA 3IFVA 3U60F 4D2GA 2IZOB 3WGWA 1U7BA 2HIKB 1IZ4A 4L6PA 1PLRA 3G65A 3G65C 1B8HA 1PLQA 2ZVWA 3K4XA 3LX1A 2NTIA 3G65B 3TBLA 3P87A 2NTIB 3V61B 1RXMA 2ZVMA 2AVTA 5DA7A 2IZOC 1RWZA 1IZ5A 1UL1A 2HIKC 3AIZA 5IY4A 2ZVKA 1CZDA 3A1JA 4HK1A 4RJFA 4YHRA 3GPNA 1W60A 3A1JB 3V62B 2ZVLA 2IO4A 3HSLX 1ISQA 2NTIC 1U76A 5AUJA 5HACA 5CFKA 1SXJF 3P91A 4TR6A 2IO4B 3A2FB 5E0VA 5A6DA 3P83A 2AWAA 5IWDA 2Z0LA 3HI8A 3FDSD 3AIZC 3I2MX 3U61F 3A1JC 1RXZA 5B7OA 3F1WA 5E0UA 3AIXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B77 A;  4CS5 A;  2IX2 A;  3AIX B;  2HII A;  2IX2 C;  1UD9 A;  5H0T A;  2HII C;  3GGR A;  1VYJ A;  3FDS C;  3V60 B;  2IX2 B;  3GGR C;  5E0T A;  2HII B;  1AXC A;  2IJX A;  2ZVV A;  5DAI A;  3VKX A;  3GGR B;  4L60 A;  3GPM A;  5JNE D;  3U5Z F;  1VYM A;  2OD8 A;  1T6L A;  3LX2 A;  1YYP A;  1DML A;  5IXA A;  4ZTD A;  1GE8 A;  2HIK A;  3IFV A;  3U60 F;  4D2G A;  2IZO B;  3WGW A;  1U7B A;  2HIK B;  1IZ4 A;  4L6P A;  1PLR A;  3G65 A;  3G65 C;  1B8H A;  1PLQ A;  2ZVW A;  3K4X A;  3LX1 A;  2NTI A;  3G65 B;  3TBL A;  3P87 A;  2NTI B;  3V61 B;  1RXM A;  2ZVM A;  2AVT A;  5DA7 A;  2IZO C;  1RWZ A;  1IZ5 A;  1UL1 A;  2HIK C;  3AIZ A;  5IY4 A;  2ZVK A;  1CZD A;  3A1J A;  4HK1 A;  4RJF A;  4YHR A;  3GPN A;  1W60 A;  3A1J B;  3V62 B;  2ZVL A;  2IO4 A;  3HSL X;  1ISQ A;  2NTI C;  1U76 A;  5AUJ A;  5HAC A;  5CFK A;  1SXJ F;  3P91 A;  4TR6 A;  2IO4 B;  3A2F B;  5E0V A;  5A6D A;  3P83 A;  2AWA A;  5IWD A;  2Z0L A;  3HI8 A;  3FDS D;  3AIZ C;  3I2M X;  3U61 F;  3A1J C;  1RXZ A;  5B7O A;  3F1W A;  5E0U A;  3AIX A; 
#chains in the Genus database with same CATH topology
 1B77 A;  4CS5 A;  2IX2 A;  3AIX B;  2HII A;  2IX2 C;  1UD9 A;  5H0T A;  2HII C;  3GGR A;  1VYJ A;  3FDS C;  3V60 B;  2IX2 B;  3GGR C;  5E0T A;  2HII B;  1AXC A;  2IJX A;  2ZVV A;  5DAI A;  3VKX A;  3GGR B;  4L60 A;  3GPM A;  5JNE D;  3U5Z F;  1VYM A;  2OD8 A;  1T6L A;  3LX2 A;  1YYP A;  1DML A;  5IXA A;  4ZTD A;  1GE8 A;  2HIK A;  3IFV A;  3U60 F;  4D2G A;  2IZO B;  3WGW A;  1U7B A;  2HIK B;  1IZ4 A;  4L6P A;  1PLR A;  3G65 A;  3G65 C;  1B8H A;  1PLQ A;  2ZVW A;  3K4X A;  3LX1 A;  2NTI A;  3G65 B;  3TBL A;  3P87 A;  2NTI B;  3V61 B;  1RXM A;  2ZVM A;  2AVT A;  5DA7 A;  2IZO C;  1RWZ A;  1IZ5 A;  1UL1 A;  2HIK C;  3AIZ A;  5IY4 A;  2ZVK A;  1CZD A;  3A1J A;  4HK1 A;  4RJF A;  4YHR A;  3GPN A;  1W60 A;  3A1J B;  3V62 B;  2ZVL A;  2IO4 A;  3HSL X;  1ISQ A;  2NTI C;  1U76 A;  5AUJ A;  5HAC A;  5CFK A;  1SXJ F;  3P91 A;  4TR6 A;  2IO4 B;  3A2F B;  5E0V A;  5A6D A;  3P83 A;  2AWA A;  5IWD A;  2Z0L A;  3HI8 A;  3FDS D;  3AIZ C;  3I2M X;  3U61 F;  3A1J C;  1RXZ A;  5B7O A;  3F1W A;  5E0U A;  3AIX A; 
#chains in the Genus database with same CATH homology
 1B77 A;  4CS5 A;  2IX2 A;  3AIX B;  2HII A;  2IX2 C;  1UD9 A;  5H0T A;  2HII C;  3GGR A;  1VYJ A;  3FDS C;  3V60 B;  2IX2 B;  3GGR C;  5E0T A;  2HII B;  1AXC A;  2IJX A;  2ZVV A;  5DAI A;  3VKX A;  3GGR B;  4L60 A;  3GPM A;  5JNE D;  3U5Z F;  1VYM A;  2OD8 A;  1T6L A;  3LX2 A;  1YYP A;  1DML A;  5IXA A;  4ZTD A;  1GE8 A;  2HIK A;  3IFV A;  3U60 F;  4D2G A;  2IZO B;  3WGW A;  1U7B A;  2HIK B;  1IZ4 A;  4L6P A;  1PLR A;  3G65 A;  3G65 C;  1B8H A;  1PLQ A;  2ZVW A;  3K4X A;  3LX1 A;  2NTI A;  3G65 B;  3TBL A;  3P87 A;  2NTI B;  3V61 B;  1RXM A;  2ZVM A;  2AVT A;  5DA7 A;  2IZO C;  1RWZ A;  1IZ5 A;  1UL1 A;  2HIK C;  3AIZ A;  5IY4 A;  2ZVK A;  1CZD A;  3A1J A;  4HK1 A;  4RJF A;  4YHR A;  3GPN A;  1W60 A;  3A1J B;  3V62 B;  2ZVL A;  2IO4 A;  3HSL X;  1ISQ A;  2NTI C;  1U76 A;  5AUJ A;  5HAC A;  5CFK A;  1SXJ F;  3P91 A;  4TR6 A;  2IO4 B;  3A2F B;  5E0V A;  5A6D A;  3P83 A;  2AWA A;  5IWD A;  2Z0L A;  3HI8 A;  3FDS D;  3AIZ C;  3I2M X;  3U61 F;  3A1J C;  1RXZ A;  5B7O A;  3F1W A;  5E0U A;  3AIX A; 
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