5IY4 | Genus

Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	255
structure length	250
Chain Sequence	MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 250 atoms

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250 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Homo sapiens
publication title	Crystal structure of human PCNA in complex with the PIP box of DVC1 pubmed doi rcsb
molecule keywords	Proliferating cell nuclear antigen
total genus	54
structure length	250
sequence length	255
chains with identical sequence	C, E
ec nomenclature
pdb deposition date	2016-03-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	5iy4A00

3A1JA 4L60A 3LX2A 3GGRB 2HIKC 2OD8A 2IZOB 3GPNA 3A2FB 1YYPA 2ZVMA 1VYJA 1SXJF 3F1WA 1IZ5A 5DA7A 5E0VA 2NTIA 2IX2B 1GE8A 3FDSC 1UL1A 5A6DA 3V62B 2Z0LA 3G65A 1B77A 3A1JC 3GGRA 3I2MX 3G65B 5DAIA 2AWAA 3U61F 2IZOC 3P87A 3IFVA 3V60B 1PLRA 5JNED 1IZ4A 3P83A 2IO4A 3FDSD 1VYMA 2IO4B 4CS5A 2IX2A 2NTIC 2HIIB 4TR6A 2ZVWA 3P91A 2HIKB 4L6PA 3GGRC 5CFKA 2IJXA 2ZVVA 1RWZA 1W60A 1RXZA 3AIXA 5E0TA 1PLQA 3AIXB 5E0UA 2ZVLA 3AIZA 3GPMA 3TBLA 1T6LA 1U7BA 2HIIA 3V61B 1DMLA 2IX2C 4HK1A 3HI8A 3A1JB 2HIKA 5IXAA 4RJFA 1AXCA 5IWDA 3LX1A 3G65C 5AUJA 4D2GA 3WGWA 1RXMA 1U76A 2AVTA 1UD9A 3VKXA 5IY4A 3U5ZF 5HACA 1ISQA 4YHRA 3K4XA 3HSLX 4ZTDA 5H0TA 3U60F 3AIZC 1B8HA 2NTIB 2ZVKA 1CZDA 5B7OA 2HIIC
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3A1J A;  4L60 A;  3LX2 A;  3GGR B;  2HIK C;  2OD8 A;  2IZO B;  3GPN A;  3A2F B;  1YYP A;  2ZVM A;  1VYJ A;  1SXJ F;  3F1W A;  1IZ5 A;  5DA7 A;  5E0V A;  2NTI A;  2IX2 B;  1GE8 A;  3FDS C;  1UL1 A;  5A6D A;  3V62 B;  2Z0L A;  3G65 A;  1B77 A;  3A1J C;  3GGR A;  3I2M X;  3G65 B;  5DAI A;  2AWA A;  3U61 F;  2IZO C;  3P87 A;  3IFV A;  3V60 B;  1PLR A;  5JNE D;  1IZ4 A;  3P83 A;  2IO4 A;  3FDS D;  1VYM A;  2IO4 B;  4CS5 A;  2IX2 A;  2NTI C;  2HII B;  4TR6 A;  2ZVW A;  3P91 A;  2HIK B;  4L6P A;  3GGR C;  5CFK A;  2IJX A;  2ZVV A;  1RWZ A;  1W60 A;  1RXZ A;  3AIX A;  5E0T A;  1PLQ A;  3AIX B;  5E0U A;  2ZVL A;  3AIZ A;  3GPM A;  3TBL A;  1T6L A;  1U7B A;  2HII A;  3V61 B;  1DML A;  2IX2 C;  4HK1 A;  3HI8 A;  3A1J B;  2HIK A;  5IXA A;  4RJF A;  1AXC A;  5IWD A;  3LX1 A;  3G65 C;  5AUJ A;  4D2G A;  3WGW A;  1RXM A;  1U76 A;  2AVT A;  1UD9 A;  3VKX A;  5IY4 A;  3U5Z F;  5HAC A;  1ISQ A;  4YHR A;  3K4X A;  3HSL X;  4ZTD A;  5H0T A;  3U60 F;  3AIZ C;  1B8H A;  2NTI B;  2ZVK A;  1CZD A;  5B7O A;  2HII C; 
#chains in the Genus database with same CATH topology
 3A1J A;  4L60 A;  3LX2 A;  3GGR B;  2HIK C;  2OD8 A;  2IZO B;  3GPN A;  3A2F B;  1YYP A;  2ZVM A;  1VYJ A;  1SXJ F;  3F1W A;  1IZ5 A;  5DA7 A;  5E0V A;  2NTI A;  2IX2 B;  1GE8 A;  3FDS C;  1UL1 A;  5A6D A;  3V62 B;  2Z0L A;  3G65 A;  1B77 A;  3A1J C;  3GGR A;  3I2M X;  3G65 B;  5DAI A;  2AWA A;  3U61 F;  2IZO C;  3P87 A;  3IFV A;  3V60 B;  1PLR A;  5JNE D;  1IZ4 A;  3P83 A;  2IO4 A;  3FDS D;  1VYM A;  2IO4 B;  4CS5 A;  2IX2 A;  2NTI C;  2HII B;  4TR6 A;  2ZVW A;  3P91 A;  2HIK B;  4L6P A;  3GGR C;  5CFK A;  2IJX A;  2ZVV A;  1RWZ A;  1W60 A;  1RXZ A;  3AIX A;  5E0T A;  1PLQ A;  3AIX B;  5E0U A;  2ZVL A;  3AIZ A;  3GPM A;  3TBL A;  1T6L A;  1U7B A;  2HII A;  3V61 B;  1DML A;  2IX2 C;  4HK1 A;  3HI8 A;  3A1J B;  2HIK A;  5IXA A;  4RJF A;  1AXC A;  5IWD A;  3LX1 A;  3G65 C;  5AUJ A;  4D2G A;  3WGW A;  1RXM A;  1U76 A;  2AVT A;  1UD9 A;  3VKX A;  5IY4 A;  3U5Z F;  5HAC A;  1ISQ A;  4YHR A;  3K4X A;  3HSL X;  4ZTD A;  5H0T A;  3U60 F;  3AIZ C;  1B8H A;  2NTI B;  2ZVK A;  1CZD A;  5B7O A;  2HII C; 
#chains in the Genus database with same CATH homology
 3A1J A;  4L60 A;  3LX2 A;  3GGR B;  2HIK C;  2OD8 A;  2IZO B;  3GPN A;  3A2F B;  1YYP A;  2ZVM A;  1VYJ A;  1SXJ F;  3F1W A;  1IZ5 A;  5DA7 A;  5E0V A;  2NTI A;  2IX2 B;  1GE8 A;  3FDS C;  1UL1 A;  5A6D A;  3V62 B;  2Z0L A;  3G65 A;  1B77 A;  3A1J C;  3GGR A;  3I2M X;  3G65 B;  5DAI A;  2AWA A;  3U61 F;  2IZO C;  3P87 A;  3IFV A;  3V60 B;  1PLR A;  5JNE D;  1IZ4 A;  3P83 A;  2IO4 A;  3FDS D;  1VYM A;  2IO4 B;  4CS5 A;  2IX2 A;  2NTI C;  2HII B;  4TR6 A;  2ZVW A;  3P91 A;  2HIK B;  4L6P A;  3GGR C;  5CFK A;  2IJX A;  2ZVV A;  1RWZ A;  1W60 A;  1RXZ A;  3AIX A;  5E0T A;  1PLQ A;  3AIX B;  5E0U A;  2ZVL A;  3AIZ A;  3GPM A;  3TBL A;  1T6L A;  1U7B A;  2HII A;  3V61 B;  1DML A;  2IX2 C;  4HK1 A;  3HI8 A;  3A1J B;  2HIK A;  5IXA A;  4RJF A;  1AXC A;  5IWD A;  3LX1 A;  3G65 C;  5AUJ A;  4D2G A;  3WGW A;  1RXM A;  1U76 A;  2AVT A;  1UD9 A;  3VKX A;  5IY4 A;  3U5Z F;  5HAC A;  1ISQ A;  4YHR A;  3K4X A;  3HSL X;  4ZTD A;  5H0T A;  3U60 F;  3AIZ C;  1B8H A;  2NTI B;  2ZVK A;  1CZD A;  5B7O A;  2HII C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5IY4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations