5AUJ | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	246
structure length	239
Chain Sequence	PFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Pyrococcus furiosus dsm 3638
publication title	Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative rcsb
molecule keywords	DNA polymerase sliding clamp
total genus	56
structure length	239
sequence length	246
ec nomenclature
pdb deposition date	2015-04-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	5aujA00

3AIXA 3LX2A 5IXAA 3GPNA 3GGRB 2IZOC 3HI8A 3GPMA 5CFKA 3FDSC 1B8HA 1W60A 3V61B 1T6LA 5DA7A 2IZOB 3FDSD 2ZVVA 1RWZA 4ZTDA 2ZVWA 2ZVLA 3U5ZF 2IO4A 5AUJA 3AIZA 1DMLA 2NTIA 5HACA 3P87A 1PLRA 3G65C 3P91A 2OD8A 3A2FB 3WGWA 3V60B 3A1JA 2HIKA 4L6PA 5E0UA 4L60A 3G65B 3F1WA 2NTIC 1YYPA 4HK1A 3AIXB 1PLQA 2HIIA 2HIKC 2IJXA 5B7OA 2NTIB 3U60F 1VYJA 2Z0LA 1AXCA 1RXMA 3GGRA 5DAIA 1UL1A 3HSLX 2HIKB 2IX2A 1SXJF 3V62B 3I2MX 1B77A 5IY4A 5E0VA 2ZVKA 3AIZC 1IZ5A 1RXZA 3U61F 2HIIB 5JNED 5IWDA 5E0TA 1GE8A 4D2GA 1CZDA 3K4XA 4RJFA 3LX1A 2IX2C 1UD9A 2IO4B 5H0TA 1U76A 5A6DA 3A1JC 3VKXA 2AVTA 3TBLA 4TR6A 2IX2B 2AWAA 1VYMA 2ZVMA 3A1JB 4CS5A 4YHRA 2HIIC 1U7BA 3P83A 3IFVA 1IZ4A 1ISQA 3G65A 3GGRC
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3AIX A;  3LX2 A;  5IXA A;  3GPN A;  3GGR B;  2IZO C;  3HI8 A;  3GPM A;  5CFK A;  3FDS C;  1B8H A;  1W60 A;  3V61 B;  1T6L A;  5DA7 A;  2IZO B;  3FDS D;  2ZVV A;  1RWZ A;  4ZTD A;  2ZVW A;  2ZVL A;  3U5Z F;  2IO4 A;  5AUJ A;  3AIZ A;  1DML A;  2NTI A;  5HAC A;  3P87 A;  1PLR A;  3G65 C;  3P91 A;  2OD8 A;  3A2F B;  3WGW A;  3V60 B;  3A1J A;  2HIK A;  4L6P A;  5E0U A;  4L60 A;  3G65 B;  3F1W A;  2NTI C;  1YYP A;  4HK1 A;  3AIX B;  1PLQ A;  2HII A;  2HIK C;  2IJX A;  5B7O A;  2NTI B;  3U60 F;  1VYJ A;  2Z0L A;  1AXC A;  1RXM A;  3GGR A;  5DAI A;  1UL1 A;  3HSL X;  2HIK B;  2IX2 A;  1SXJ F;  3V62 B;  3I2M X;  1B77 A;  5IY4 A;  5E0V A;  2ZVK A;  3AIZ C;  1IZ5 A;  1RXZ A;  3U61 F;  2HII B;  5JNE D;  5IWD A;  5E0T A;  1GE8 A;  4D2G A;  1CZD A;  3K4X A;  4RJF A;  3LX1 A;  2IX2 C;  1UD9 A;  2IO4 B;  5H0T A;  1U76 A;  5A6D A;  3A1J C;  3VKX A;  2AVT A;  3TBL A;  4TR6 A;  2IX2 B;  2AWA A;  1VYM A;  2ZVM A;  3A1J B;  4CS5 A;  4YHR A;  2HII C;  1U7B A;  3P83 A;  3IFV A;  1IZ4 A;  1ISQ A;  3G65 A;  3GGR C; 
#chains in the Genus database with same CATH topology
 3AIX A;  3LX2 A;  5IXA A;  3GPN A;  3GGR B;  2IZO C;  3HI8 A;  3GPM A;  5CFK A;  3FDS C;  1B8H A;  1W60 A;  3V61 B;  1T6L A;  5DA7 A;  2IZO B;  3FDS D;  2ZVV A;  1RWZ A;  4ZTD A;  2ZVW A;  2ZVL A;  3U5Z F;  2IO4 A;  5AUJ A;  3AIZ A;  1DML A;  2NTI A;  5HAC A;  3P87 A;  1PLR A;  3G65 C;  3P91 A;  2OD8 A;  3A2F B;  3WGW A;  3V60 B;  3A1J A;  2HIK A;  4L6P A;  5E0U A;  4L60 A;  3G65 B;  3F1W A;  2NTI C;  1YYP A;  4HK1 A;  3AIX B;  1PLQ A;  2HII A;  2HIK C;  2IJX A;  5B7O A;  2NTI B;  3U60 F;  1VYJ A;  2Z0L A;  1AXC A;  1RXM A;  3GGR A;  5DAI A;  1UL1 A;  3HSL X;  2HIK B;  2IX2 A;  1SXJ F;  3V62 B;  3I2M X;  1B77 A;  5IY4 A;  5E0V A;  2ZVK A;  3AIZ C;  1IZ5 A;  1RXZ A;  3U61 F;  2HII B;  5JNE D;  5IWD A;  5E0T A;  1GE8 A;  4D2G A;  1CZD A;  3K4X A;  4RJF A;  3LX1 A;  2IX2 C;  1UD9 A;  2IO4 B;  5H0T A;  1U76 A;  5A6D A;  3A1J C;  3VKX A;  2AVT A;  3TBL A;  4TR6 A;  2IX2 B;  2AWA A;  1VYM A;  2ZVM A;  3A1J B;  4CS5 A;  4YHR A;  2HII C;  1U7B A;  3P83 A;  3IFV A;  1IZ4 A;  1ISQ A;  3G65 A;  3GGR C; 
#chains in the Genus database with same CATH homology
 3AIX A;  3LX2 A;  5IXA A;  3GPN A;  3GGR B;  2IZO C;  3HI8 A;  3GPM A;  5CFK A;  3FDS C;  1B8H A;  1W60 A;  3V61 B;  1T6L A;  5DA7 A;  2IZO B;  3FDS D;  2ZVV A;  1RWZ A;  4ZTD A;  2ZVW A;  2ZVL A;  3U5Z F;  2IO4 A;  5AUJ A;  3AIZ A;  1DML A;  2NTI A;  5HAC A;  3P87 A;  1PLR A;  3G65 C;  3P91 A;  2OD8 A;  3A2F B;  3WGW A;  3V60 B;  3A1J A;  2HIK A;  4L6P A;  5E0U A;  4L60 A;  3G65 B;  3F1W A;  2NTI C;  1YYP A;  4HK1 A;  3AIX B;  1PLQ A;  2HII A;  2HIK C;  2IJX A;  5B7O A;  2NTI B;  3U60 F;  1VYJ A;  2Z0L A;  1AXC A;  1RXM A;  3GGR A;  5DAI A;  1UL1 A;  3HSL X;  2HIK B;  2IX2 A;  1SXJ F;  3V62 B;  3I2M X;  1B77 A;  5IY4 A;  5E0V A;  2ZVK A;  3AIZ C;  1IZ5 A;  1RXZ A;  3U61 F;  2HII B;  5JNE D;  5IWD A;  5E0T A;  1GE8 A;  4D2G A;  1CZD A;  3K4X A;  4RJF A;  3LX1 A;  2IX2 C;  1UD9 A;  2IO4 B;  5H0T A;  1U76 A;  5A6D A;  3A1J C;  3VKX A;  2AVT A;  3TBL A;  4TR6 A;  2IX2 B;  2AWA A;  1VYM A;  2ZVM A;  3A1J B;  4CS5 A;  4YHR A;  2HII C;  1U7B A;  3P83 A;  3IFV A;  1IZ4 A;  1ISQ A;  3G65 A;  3GGR C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5AUJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations