5AUJA

Pyrococcus furiosus proliferating cell nuclear antigen (pcna) semet derivative
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
246
structure length
239
Chain Sequence
PFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords DNA polymerase sliding clamp
publication title Pyrococcus furiosus proliferating cell nuclear antigen (PCNA) SeMet derivative
rcsb
source organism Pyrococcus furiosus dsm 3638
total genus 56
structure length 239
sequence length 246
ec nomenclature
pdb deposition date 2015-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 5aujA00
3AIXA 4YHRA 3U60F 4HK1A 1B8HA 1UL1A 3VKXA 3LX2A 1ISQA 1VYMA 2IX2B 2Z0LA 1VYJA 4L60A 5JNED 1IZ4A 1RXMA 2AWAA 5AUJA 2ZVVA 1IZ5A 1U7BA 2HIKB 3LX1A 3P83A 4D2GA 3F1WA 2NTIB 3A1JB 5B7OA 3AIZC 3V62B 4L6PA 1PLQA 1GE8A 4TR6A 2OD8A 2IZOB 5DA7A 2AVTA 5H0TA 2IX2C 5IWDA 2IO4B 5E0UA 4RJFA 5CFKA 1DMLA 2ZVWA 2ZVMA 5E0TA 2HIKC 3GPNA 3I2MX 2NTIC 3A1JC 2IX2A 5IY4A 2IO4A 1AXCA 2HIIB 2HIIC 2ZVLA 3K4XA 3U61F 2IZOC 5E0VA 1SXJF 2ZVKA 1U76A 3FDSD 1RXZA 2HIKA 3HI8A 3V60B 4CS5A 2IJXA 2NTIA 3A1JA 3HSLX 3AIZA 5A6DA 3A2FB 3G65B 3G65C 5DAIA 2HIIA 1T6LA 1UD9A 3GGRB 3GGRC 3U5ZF 1W60A 1CZDA 3P87A 3AIXB 5IXAA 3GPMA 1PLRA 4ZTDA 5HACA 3TBLA 3WGWA 3V61B 3G65A 1RWZA 1YYPA 3GGRA 3IFVA 1B77A 3FDSC 3P91A
chains in the Genus database with same CATH superfamily
3AIXA 4YHRA 3U60F 4HK1A 1B8HA 1UL1A 3VKXA 3LX2A 1ISQA 1VYMA 2IX2B 2Z0LA 1VYJA 4L60A 5JNED 1IZ4A 1RXMA 2AWAA 5AUJA 2ZVVA 1IZ5A 1U7BA 2HIKB 3LX1A 3P83A 4D2GA 3F1WA 2NTIB 3A1JB 5B7OA 3AIZC 3V62B 4L6PA 1PLQA 1GE8A 4TR6A 2OD8A 2IZOB 5DA7A 2AVTA 5H0TA 2IX2C 5IWDA 2IO4B 5E0UA 4RJFA 5CFKA 1DMLA 2ZVWA 2ZVMA 5E0TA 2HIKC 3GPNA 3I2MX 2NTIC 3A1JC 2IX2A 5IY4A 2IO4A 1AXCA 2HIIB 2HIIC 2ZVLA 3K4XA 3U61F 2IZOC 5E0VA 1SXJF 2ZVKA 1U76A 3FDSD 1RXZA 2HIKA 3HI8A 3V60B 4CS5A 2IJXA 2NTIA 3A1JA 3HSLX 3AIZA 5A6DA 3A2FB 3G65B 3G65C 5DAIA 2HIIA 1T6LA 1UD9A 3GGRB 3GGRC 3U5ZF 1W60A 1CZDA 3P87A 3AIXB 5IXAA 3GPMA 1PLRA 4ZTDA 5HACA 3TBLA 3WGWA 3V61B 3G65A 1RWZA 1YYPA 3GGRA 3IFVA 1B77A 3FDSC 3P91A
chains in the Genus database with same CATH topology
3AIXA 4YHRA 3U60F 4HK1A 1B8HA 1UL1A 3VKXA 3LX2A 1ISQA 1VYMA 2IX2B 2Z0LA 1VYJA 4L60A 5JNED 1IZ4A 1RXMA 2AWAA 5AUJA 2ZVVA 1IZ5A 1U7BA 2HIKB 3LX1A 3P83A 4D2GA 3F1WA 2NTIB 3A1JB 5B7OA 3AIZC 3V62B 4L6PA 1PLQA 1GE8A 4TR6A 2OD8A 2IZOB 5DA7A 2AVTA 5H0TA 2IX2C 5IWDA 2IO4B 5E0UA 4RJFA 5CFKA 1DMLA 2ZVWA 2ZVMA 5E0TA 2HIKC 3GPNA 3I2MX 2NTIC 3A1JC 2IX2A 5IY4A 2IO4A 1AXCA 2HIIB 2HIIC 2ZVLA 3K4XA 3U61F 2IZOC 5E0VA 1SXJF 2ZVKA 1U76A 3FDSD 1RXZA 2HIKA 3HI8A 3V60B 4CS5A 2IJXA 2NTIA 3A1JA 3HSLX 3AIZA 5A6DA 3A2FB 3G65B 3G65C 5DAIA 2HIIA 1T6LA 1UD9A 3GGRB 3GGRC 3U5ZF 1W60A 1CZDA 3P87A 3AIXB 5IXAA 3GPMA 1PLRA 4ZTDA 5HACA 3TBLA 3WGWA 3V61B 3G65A 1RWZA 1YYPA 3GGRA 3IFVA 1B77A 3FDSC 3P91A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AIX A;  4YHR A;  3U60 F;  4HK1 A;  1B8H A;  1UL1 A;  3VKX A;  3LX2 A;  1ISQ A;  1VYM A;  2IX2 B;  2Z0L A;  1VYJ A;  4L60 A;  5JNE D;  1IZ4 A;  1RXM A;  2AWA A;  5AUJ A;  2ZVV A;  1IZ5 A;  1U7B A;  2HIK B;  3LX1 A;  3P83 A;  4D2G A;  3F1W A;  2NTI B;  3A1J B;  5B7O A;  3AIZ C;  3V62 B;  4L6P A;  1PLQ A;  1GE8 A;  4TR6 A;  2OD8 A;  2IZO B;  5DA7 A;  2AVT A;  5H0T A;  2IX2 C;  5IWD A;  2IO4 B;  5E0U A;  4RJF A;  5CFK A;  1DML A;  2ZVW A;  2ZVM A;  5E0T A;  2HIK C;  3GPN A;  3I2M X;  2NTI C;  3A1J C;  2IX2 A;  5IY4 A;  2IO4 A;  1AXC A;  2HII B;  2HII C;  2ZVL A;  3K4X A;  3U61 F;  2IZO C;  5E0V A;  1SXJ F;  2ZVK A;  1U76 A;  3FDS D;  1RXZ A;  2HIK A;  3HI8 A;  3V60 B;  4CS5 A;  2IJX A;  2NTI A;  3A1J A;  3HSL X;  3AIZ A;  5A6D A;  3A2F B;  3G65 B;  3G65 C;  5DAI A;  2HII A;  1T6L A;  1UD9 A;  3GGR B;  3GGR C;  3U5Z F;  1W60 A;  1CZD A;  3P87 A;  3AIX B;  5IXA A;  3GPM A;  1PLR A;  4ZTD A;  5HAC A;  3TBL A;  3WGW A;  3V61 B;  3G65 A;  1RWZ A;  1YYP A;  3GGR A;  3IFV A;  1B77 A;  3FDS C;  3P91 A; 
#chains in the Genus database with same CATH topology
 3AIX A;  4YHR A;  3U60 F;  4HK1 A;  1B8H A;  1UL1 A;  3VKX A;  3LX2 A;  1ISQ A;  1VYM A;  2IX2 B;  2Z0L A;  1VYJ A;  4L60 A;  5JNE D;  1IZ4 A;  1RXM A;  2AWA A;  5AUJ A;  2ZVV A;  1IZ5 A;  1U7B A;  2HIK B;  3LX1 A;  3P83 A;  4D2G A;  3F1W A;  2NTI B;  3A1J B;  5B7O A;  3AIZ C;  3V62 B;  4L6P A;  1PLQ A;  1GE8 A;  4TR6 A;  2OD8 A;  2IZO B;  5DA7 A;  2AVT A;  5H0T A;  2IX2 C;  5IWD A;  2IO4 B;  5E0U A;  4RJF A;  5CFK A;  1DML A;  2ZVW A;  2ZVM A;  5E0T A;  2HIK C;  3GPN A;  3I2M X;  2NTI C;  3A1J C;  2IX2 A;  5IY4 A;  2IO4 A;  1AXC A;  2HII B;  2HII C;  2ZVL A;  3K4X A;  3U61 F;  2IZO C;  5E0V A;  1SXJ F;  2ZVK A;  1U76 A;  3FDS D;  1RXZ A;  2HIK A;  3HI8 A;  3V60 B;  4CS5 A;  2IJX A;  2NTI A;  3A1J A;  3HSL X;  3AIZ A;  5A6D A;  3A2F B;  3G65 B;  3G65 C;  5DAI A;  2HII A;  1T6L A;  1UD9 A;  3GGR B;  3GGR C;  3U5Z F;  1W60 A;  1CZD A;  3P87 A;  3AIX B;  5IXA A;  3GPM A;  1PLR A;  4ZTD A;  5HAC A;  3TBL A;  3WGW A;  3V61 B;  3G65 A;  1RWZ A;  1YYP A;  3GGR A;  3IFV A;  1B77 A;  3FDS C;  3P91 A; 
#chains in the Genus database with same CATH homology
 3AIX A;  4YHR A;  3U60 F;  4HK1 A;  1B8H A;  1UL1 A;  3VKX A;  3LX2 A;  1ISQ A;  1VYM A;  2IX2 B;  2Z0L A;  1VYJ A;  4L60 A;  5JNE D;  1IZ4 A;  1RXM A;  2AWA A;  5AUJ A;  2ZVV A;  1IZ5 A;  1U7B A;  2HIK B;  3LX1 A;  3P83 A;  4D2G A;  3F1W A;  2NTI B;  3A1J B;  5B7O A;  3AIZ C;  3V62 B;  4L6P A;  1PLQ A;  1GE8 A;  4TR6 A;  2OD8 A;  2IZO B;  5DA7 A;  2AVT A;  5H0T A;  2IX2 C;  5IWD A;  2IO4 B;  5E0U A;  4RJF A;  5CFK A;  1DML A;  2ZVW A;  2ZVM A;  5E0T A;  2HIK C;  3GPN A;  3I2M X;  2NTI C;  3A1J C;  2IX2 A;  5IY4 A;  2IO4 A;  1AXC A;  2HII B;  2HII C;  2ZVL A;  3K4X A;  3U61 F;  2IZO C;  5E0V A;  1SXJ F;  2ZVK A;  1U76 A;  3FDS D;  1RXZ A;  2HIK A;  3HI8 A;  3V60 B;  4CS5 A;  2IJX A;  2NTI A;  3A1J A;  3HSL X;  3AIZ A;  5A6D A;  3A2F B;  3G65 B;  3G65 C;  5DAI A;  2HII A;  1T6L A;  1UD9 A;  3GGR B;  3GGR C;  3U5Z F;  1W60 A;  1CZD A;  3P87 A;  3AIX B;  5IXA A;  3GPM A;  1PLR A;  4ZTD A;  5HAC A;  3TBL A;  3WGW A;  3V61 B;  3G65 A;  1RWZ A;  1YYP A;  3GGR A;  3IFV A;  1B77 A;  3FDS C;  3P91 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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