5B7OA

Crystal structure of proliferating cell nuclear antigen from leishmania donovani at 2.95 angstrom resolution
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
289
structure length
248
Chain Sequence
MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-6)TVIII2 (57-60)AH1 (9-21)TVIII1 (6-9)AH2 (72-81)S2 (25-31)EMPTYS5 (59-61)3H1 (54-56)TI1 (31-34)TI2 (41-44)S4 (46-53)AH4 (242-249)TIV1 (62-65)S6 (67-71)TI3 (83-86)TII1 (93-96)S8 (98-104)TI4 (105-108)AH3 (141-152)S12 (166-173)S11 (157-163)TII2 (163-166)S14 (229-230)TIV3 (184-228)S15 (236-241)S3 (34-40)S9 (111-117)S10 (135-140)TIV2 (152-155)S7 (87-92)S13 (176-183)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Leishmania donovani
publication title Crystal structure of proliferating cell nuclear antigen from Leishmania donovani at 2.95 Angstrom resolution.
rcsb
molecule keywords Proliferating cell nuclear antigen
total genus 52
structure length 248
sequence length 289
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2016-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 5b7oA00
2ZVMA 3V61B 3AIXA 5AUJA 3GGRB 2HIKA 5DAIA 1B8HA 4D2GA 1UD9A 3V62B 2HIIB 4HK1A 5E0TA 2IO4B 2IZOB 1W60A 1IZ4A 1VYJA 2OD8A 3V60B 1GE8A 2IX2B 5E0UA 4RJFA 3LX2A 3HSLX 2ZVWA 5H0TA 5IY4A 5HACA 3WGWA 5A6DA 3G65A 5CFKA 2AWAA 3P87A 3VKXA 2ZVVA 2NTIC 3GGRA 3I2MX 3U5ZF 3A1JB 5IXAA 1AXCA 3G65C 3U60F 1VYMA 2IO4A 4L6PA 1YYPA 1T6LA 3GGRC 3HI8A 5E0VA 3GPNA 3K4XA 2NTIA 3P83A 3AIXB 2IZOC 2HIKB 1RWZA 3FDSC 2ZVLA 5DA7A 3FDSD 5B7OA 2ZVKA 4YHRA 4L60A 3U61F 3F1WA 1U76A 1RXMA 1IZ5A 1CZDA 2Z0LA 3A2FB 2HIIA 4TR6A 1ISQA 3IFVA 2AVTA 2IX2A 1RXZA 3G65B 2HIIC 1SXJF 3AIZA 1U7BA 4CS5A 3GPMA 1UL1A 5JNED 2IX2C 3P91A 4ZTDA 1PLQA 3AIZC 1PLRA 2HIKC 3A1JA 5IWDA 1B77A 2NTIB 2IJXA 3LX1A 3A1JC 1DMLA 3TBLA
chains in the Genus database with same CATH superfamily
2ZVMA 3V61B 3AIXA 5AUJA 3GGRB 2HIKA 5DAIA 1B8HA 4D2GA 1UD9A 3V62B 2HIIB 4HK1A 5E0TA 2IO4B 2IZOB 1W60A 1IZ4A 1VYJA 2OD8A 3V60B 1GE8A 2IX2B 5E0UA 4RJFA 3LX2A 3HSLX 2ZVWA 5H0TA 5IY4A 5HACA 3WGWA 5A6DA 3G65A 5CFKA 2AWAA 3P87A 3VKXA 2ZVVA 2NTIC 3GGRA 3I2MX 3U5ZF 3A1JB 5IXAA 1AXCA 3G65C 3U60F 1VYMA 2IO4A 4L6PA 1YYPA 1T6LA 3GGRC 3HI8A 5E0VA 3GPNA 3K4XA 2NTIA 3P83A 3AIXB 2IZOC 2HIKB 1RWZA 3FDSC 2ZVLA 5DA7A 3FDSD 5B7OA 2ZVKA 4YHRA 4L60A 3U61F 3F1WA 1U76A 1RXMA 1IZ5A 1CZDA 2Z0LA 3A2FB 2HIIA 4TR6A 1ISQA 3IFVA 2AVTA 2IX2A 1RXZA 3G65B 2HIIC 1SXJF 3AIZA 1U7BA 4CS5A 3GPMA 1UL1A 5JNED 2IX2C 3P91A 4ZTDA 1PLQA 3AIZC 1PLRA 2HIKC 3A1JA 5IWDA 1B77A 2NTIB 2IJXA 3LX1A 3A1JC 1DMLA 3TBLA
chains in the Genus database with same CATH topology
2ZVMA 3V61B 3AIXA 5AUJA 3GGRB 2HIKA 5DAIA 1B8HA 4D2GA 1UD9A 3V62B 2HIIB 4HK1A 5E0TA 2IO4B 2IZOB 1W60A 1IZ4A 1VYJA 2OD8A 3V60B 1GE8A 2IX2B 5E0UA 4RJFA 3LX2A 3HSLX 2ZVWA 5H0TA 5IY4A 5HACA 3WGWA 5A6DA 3G65A 5CFKA 2AWAA 3P87A 3VKXA 2ZVVA 2NTIC 3GGRA 3I2MX 3U5ZF 3A1JB 5IXAA 1AXCA 3G65C 3U60F 1VYMA 2IO4A 4L6PA 1YYPA 1T6LA 3GGRC 3HI8A 5E0VA 3GPNA 3K4XA 2NTIA 3P83A 3AIXB 2IZOC 2HIKB 1RWZA 3FDSC 2ZVLA 5DA7A 3FDSD 5B7OA 2ZVKA 4YHRA 4L60A 3U61F 3F1WA 1U76A 1RXMA 1IZ5A 1CZDA 2Z0LA 3A2FB 2HIIA 4TR6A 1ISQA 3IFVA 2AVTA 2IX2A 1RXZA 3G65B 2HIIC 1SXJF 3AIZA 1U7BA 4CS5A 3GPMA 1UL1A 5JNED 2IX2C 3P91A 4ZTDA 1PLQA 3AIZC 1PLRA 2HIKC 3A1JA 5IWDA 1B77A 2NTIB 2IJXA 3LX1A 3A1JC 1DMLA 3TBLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZVM A;  3V61 B;  3AIX A;  5AUJ A;  3GGR B;  2HIK A;  5DAI A;  1B8H A;  4D2G A;  1UD9 A;  3V62 B;  2HII B;  4HK1 A;  5E0T A;  2IO4 B;  2IZO B;  1W60 A;  1IZ4 A;  1VYJ A;  2OD8 A;  3V60 B;  1GE8 A;  2IX2 B;  5E0U A;  4RJF A;  3LX2 A;  3HSL X;  2ZVW A;  5H0T A;  5IY4 A;  5HAC A;  3WGW A;  5A6D A;  3G65 A;  5CFK A;  2AWA A;  3P87 A;  3VKX A;  2ZVV A;  2NTI C;  3GGR A;  3I2M X;  3U5Z F;  3A1J B;  5IXA A;  1AXC A;  3G65 C;  3U60 F;  1VYM A;  2IO4 A;  4L6P A;  1YYP A;  1T6L A;  3GGR C;  3HI8 A;  5E0V A;  3GPN A;  3K4X A;  2NTI A;  3P83 A;  3AIX B;  2IZO C;  2HIK B;  1RWZ A;  3FDS C;  2ZVL A;  5DA7 A;  3FDS D;  5B7O A;  2ZVK A;  4YHR A;  4L60 A;  3U61 F;  3F1W A;  1U76 A;  1RXM A;  1IZ5 A;  1CZD A;  2Z0L A;  3A2F B;  2HII A;  4TR6 A;  1ISQ A;  3IFV A;  2AVT A;  2IX2 A;  1RXZ A;  3G65 B;  2HII C;  1SXJ F;  3AIZ A;  1U7B A;  4CS5 A;  3GPM A;  1UL1 A;  5JNE D;  2IX2 C;  3P91 A;  4ZTD A;  1PLQ A;  3AIZ C;  1PLR A;  2HIK C;  3A1J A;  5IWD A;  1B77 A;  2NTI B;  2IJX A;  3LX1 A;  3A1J C;  1DML A;  3TBL A; 
#chains in the Genus database with same CATH topology
 2ZVM A;  3V61 B;  3AIX A;  5AUJ A;  3GGR B;  2HIK A;  5DAI A;  1B8H A;  4D2G A;  1UD9 A;  3V62 B;  2HII B;  4HK1 A;  5E0T A;  2IO4 B;  2IZO B;  1W60 A;  1IZ4 A;  1VYJ A;  2OD8 A;  3V60 B;  1GE8 A;  2IX2 B;  5E0U A;  4RJF A;  3LX2 A;  3HSL X;  2ZVW A;  5H0T A;  5IY4 A;  5HAC A;  3WGW A;  5A6D A;  3G65 A;  5CFK A;  2AWA A;  3P87 A;  3VKX A;  2ZVV A;  2NTI C;  3GGR A;  3I2M X;  3U5Z F;  3A1J B;  5IXA A;  1AXC A;  3G65 C;  3U60 F;  1VYM A;  2IO4 A;  4L6P A;  1YYP A;  1T6L A;  3GGR C;  3HI8 A;  5E0V A;  3GPN A;  3K4X A;  2NTI A;  3P83 A;  3AIX B;  2IZO C;  2HIK B;  1RWZ A;  3FDS C;  2ZVL A;  5DA7 A;  3FDS D;  5B7O A;  2ZVK A;  4YHR A;  4L60 A;  3U61 F;  3F1W A;  1U76 A;  1RXM A;  1IZ5 A;  1CZD A;  2Z0L A;  3A2F B;  2HII A;  4TR6 A;  1ISQ A;  3IFV A;  2AVT A;  2IX2 A;  1RXZ A;  3G65 B;  2HII C;  1SXJ F;  3AIZ A;  1U7B A;  4CS5 A;  3GPM A;  1UL1 A;  5JNE D;  2IX2 C;  3P91 A;  4ZTD A;  1PLQ A;  3AIZ C;  1PLR A;  2HIK C;  3A1J A;  5IWD A;  1B77 A;  2NTI B;  2IJX A;  3LX1 A;  3A1J C;  1DML A;  3TBL A; 
#chains in the Genus database with same CATH homology
 2ZVM A;  3V61 B;  3AIX A;  5AUJ A;  3GGR B;  2HIK A;  5DAI A;  1B8H A;  4D2G A;  1UD9 A;  3V62 B;  2HII B;  4HK1 A;  5E0T A;  2IO4 B;  2IZO B;  1W60 A;  1IZ4 A;  1VYJ A;  2OD8 A;  3V60 B;  1GE8 A;  2IX2 B;  5E0U A;  4RJF A;  3LX2 A;  3HSL X;  2ZVW A;  5H0T A;  5IY4 A;  5HAC A;  3WGW A;  5A6D A;  3G65 A;  5CFK A;  2AWA A;  3P87 A;  3VKX A;  2ZVV A;  2NTI C;  3GGR A;  3I2M X;  3U5Z F;  3A1J B;  5IXA A;  1AXC A;  3G65 C;  3U60 F;  1VYM A;  2IO4 A;  4L6P A;  1YYP A;  1T6L A;  3GGR C;  3HI8 A;  5E0V A;  3GPN A;  3K4X A;  2NTI A;  3P83 A;  3AIX B;  2IZO C;  2HIK B;  1RWZ A;  3FDS C;  2ZVL A;  5DA7 A;  3FDS D;  5B7O A;  2ZVK A;  4YHR A;  4L60 A;  3U61 F;  3F1W A;  1U76 A;  1RXM A;  1IZ5 A;  1CZD A;  2Z0L A;  3A2F B;  2HII A;  4TR6 A;  1ISQ A;  3IFV A;  2AVT A;  2IX2 A;  1RXZ A;  3G65 B;  2HII C;  1SXJ F;  3AIZ A;  1U7B A;  4CS5 A;  3GPM A;  1UL1 A;  5JNE D;  2IX2 C;  3P91 A;  4ZTD A;  1PLQ A;  3AIZ C;  1PLR A;  2HIK C;  3A1J A;  5IWD A;  1B77 A;  2NTI B;  2IJX A;  3LX1 A;  3A1J C;  1DML A;  3TBL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.