5CFKA

Crystal structure of proliferating cell nuclear antigen from leishmania donovani at 3.2 a resolution
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
256
structure length
253
Chain Sequence
MLEAQVQFASLWKRLVECINGLVNEANFDCNPGGLSVQAMDSSHVALVHMLLRDDCFVKYQCGRNSILGLNLASLSKVLKIVDSNDSLSLRHDDDSDVVTLTSENPEKTRKCEYQLKLLEIEAESMGIPEMDYRSTVTLNSAEFAKIVRDMQVFGDTVTIAISKEGVKFSSSGDVGQGYTFLQAAGVSDRGVEVTMEEPITLSFALRFMGIFAKGSTLSERVTLKFAKDSPCMVEYGIDNVGYLRYYLAPKVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Proliferating cell nuclear antigen,Proliferating cell nuclea
publication title Crystal structure of Proliferating Cell Nuclear Antigen from Leishmania donovani at 3.2 A resolution
rcsb
source organism Leishmania donovani
total genus 49
structure length 253
sequence length 256
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2015-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 5cfkA00
3I2MX 2HIKC 5E0UA 3F1WA 1AXCA 3G65B 1SXJF 1B77A 3GGRC 1PLQA 1U76A 1W60A 2IO4A 2ZVKA 2ZVWA 2AWAA 3G65C 5HACA 5H0TA 3A1JB 5E0TA 3LX2A 5B7OA 2IX2B 1YYPA 3GPMA 1RXZA 3P83A 2Z0LA 3U61F 4L6PA 3P91A 3A1JC 3HI8A 5JNED 1CZDA 5DAIA 1GE8A 3GPNA 2ZVMA 2IX2C 4HK1A 2IZOC 1RXMA 1DMLA 3AIXA 4RJFA 2ZVLA 3LX1A 2NTIA 4ZTDA 5E0VA 2HIIA 3FDSC 2IO4B 5IXAA 2OD8A 2IZOB 1U7BA 2HIIB 1RWZA 3IFVA 1UL1A 2NTIC 3V60B 5CFKA 3HSLX 3FDSD 3V61B 2HIIC 3V62B 2AVTA 5DA7A 3VKXA 1IZ5A 3WGWA 3TBLA 1PLRA 3U60F 5A6DA 1T6LA 1IZ4A 3AIXB 3K4XA 2IJXA 2NTIB 1B8HA 3P87A 5AUJA 3AIZA 1UD9A 2HIKA 5IY4A 3A1JA 1VYJA 4L60A 3GGRA 2ZVVA 2IX2A 2HIKB 4CS5A 3A2FB 3U5ZF 3GGRB 3G65A 4YHRA 4TR6A 3AIZC 1VYMA 4D2GA 5IWDA 1ISQA
chains in the Genus database with same CATH superfamily
3I2MX 2HIKC 5E0UA 3F1WA 1AXCA 3G65B 1SXJF 1B77A 3GGRC 1PLQA 1U76A 1W60A 2IO4A 2ZVKA 2ZVWA 2AWAA 3G65C 5HACA 5H0TA 3A1JB 5E0TA 3LX2A 5B7OA 2IX2B 1YYPA 3GPMA 1RXZA 3P83A 2Z0LA 3U61F 4L6PA 3P91A 3A1JC 3HI8A 5JNED 1CZDA 5DAIA 1GE8A 3GPNA 2ZVMA 2IX2C 4HK1A 2IZOC 1RXMA 1DMLA 3AIXA 4RJFA 2ZVLA 3LX1A 2NTIA 4ZTDA 5E0VA 2HIIA 3FDSC 2IO4B 5IXAA 2OD8A 2IZOB 1U7BA 2HIIB 1RWZA 3IFVA 1UL1A 2NTIC 3V60B 5CFKA 3HSLX 3FDSD 3V61B 2HIIC 3V62B 2AVTA 5DA7A 3VKXA 1IZ5A 3WGWA 3TBLA 1PLRA 3U60F 5A6DA 1T6LA 1IZ4A 3AIXB 3K4XA 2IJXA 2NTIB 1B8HA 3P87A 5AUJA 3AIZA 1UD9A 2HIKA 5IY4A 3A1JA 1VYJA 4L60A 3GGRA 2ZVVA 2IX2A 2HIKB 4CS5A 3A2FB 3U5ZF 3GGRB 3G65A 4YHRA 4TR6A 3AIZC 1VYMA 4D2GA 5IWDA 1ISQA
chains in the Genus database with same CATH topology
3I2MX 2HIKC 5E0UA 3F1WA 1AXCA 3G65B 1SXJF 1B77A 3GGRC 1PLQA 1U76A 1W60A 2IO4A 2ZVKA 2ZVWA 2AWAA 3G65C 5HACA 5H0TA 3A1JB 5E0TA 3LX2A 5B7OA 2IX2B 1YYPA 3GPMA 1RXZA 3P83A 2Z0LA 3U61F 4L6PA 3P91A 3A1JC 3HI8A 5JNED 1CZDA 5DAIA 1GE8A 3GPNA 2ZVMA 2IX2C 4HK1A 2IZOC 1RXMA 1DMLA 3AIXA 4RJFA 2ZVLA 3LX1A 2NTIA 4ZTDA 5E0VA 2HIIA 3FDSC 2IO4B 5IXAA 2OD8A 2IZOB 1U7BA 2HIIB 1RWZA 3IFVA 1UL1A 2NTIC 3V60B 5CFKA 3HSLX 3FDSD 3V61B 2HIIC 3V62B 2AVTA 5DA7A 3VKXA 1IZ5A 3WGWA 3TBLA 1PLRA 3U60F 5A6DA 1T6LA 1IZ4A 3AIXB 3K4XA 2IJXA 2NTIB 1B8HA 3P87A 5AUJA 3AIZA 1UD9A 2HIKA 5IY4A 3A1JA 1VYJA 4L60A 3GGRA 2ZVVA 2IX2A 2HIKB 4CS5A 3A2FB 3U5ZF 3GGRB 3G65A 4YHRA 4TR6A 3AIZC 1VYMA 4D2GA 5IWDA 1ISQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I2M X;  2HIK C;  5E0U A;  3F1W A;  1AXC A;  3G65 B;  1SXJ F;  1B77 A;  3GGR C;  1PLQ A;  1U76 A;  1W60 A;  2IO4 A;  2ZVK A;  2ZVW A;  2AWA A;  3G65 C;  5HAC A;  5H0T A;  3A1J B;  5E0T A;  3LX2 A;  5B7O A;  2IX2 B;  1YYP A;  3GPM A;  1RXZ A;  3P83 A;  2Z0L A;  3U61 F;  4L6P A;  3P91 A;  3A1J C;  3HI8 A;  5JNE D;  1CZD A;  5DAI A;  1GE8 A;  3GPN A;  2ZVM A;  2IX2 C;  4HK1 A;  2IZO C;  1RXM A;  1DML A;  3AIX A;  4RJF A;  2ZVL A;  3LX1 A;  2NTI A;  4ZTD A;  5E0V A;  2HII A;  3FDS C;  2IO4 B;  5IXA A;  2OD8 A;  2IZO B;  1U7B A;  2HII B;  1RWZ A;  3IFV A;  1UL1 A;  2NTI C;  3V60 B;  5CFK A;  3HSL X;  3FDS D;  3V61 B;  2HII C;  3V62 B;  2AVT A;  5DA7 A;  3VKX A;  1IZ5 A;  3WGW A;  3TBL A;  1PLR A;  3U60 F;  5A6D A;  1T6L A;  1IZ4 A;  3AIX B;  3K4X A;  2IJX A;  2NTI B;  1B8H A;  3P87 A;  5AUJ A;  3AIZ A;  1UD9 A;  2HIK A;  5IY4 A;  3A1J A;  1VYJ A;  4L60 A;  3GGR A;  2ZVV A;  2IX2 A;  2HIK B;  4CS5 A;  3A2F B;  3U5Z F;  3GGR B;  3G65 A;  4YHR A;  4TR6 A;  3AIZ C;  1VYM A;  4D2G A;  5IWD A;  1ISQ A; 
#chains in the Genus database with same CATH topology
 3I2M X;  2HIK C;  5E0U A;  3F1W A;  1AXC A;  3G65 B;  1SXJ F;  1B77 A;  3GGR C;  1PLQ A;  1U76 A;  1W60 A;  2IO4 A;  2ZVK A;  2ZVW A;  2AWA A;  3G65 C;  5HAC A;  5H0T A;  3A1J B;  5E0T A;  3LX2 A;  5B7O A;  2IX2 B;  1YYP A;  3GPM A;  1RXZ A;  3P83 A;  2Z0L A;  3U61 F;  4L6P A;  3P91 A;  3A1J C;  3HI8 A;  5JNE D;  1CZD A;  5DAI A;  1GE8 A;  3GPN A;  2ZVM A;  2IX2 C;  4HK1 A;  2IZO C;  1RXM A;  1DML A;  3AIX A;  4RJF A;  2ZVL A;  3LX1 A;  2NTI A;  4ZTD A;  5E0V A;  2HII A;  3FDS C;  2IO4 B;  5IXA A;  2OD8 A;  2IZO B;  1U7B A;  2HII B;  1RWZ A;  3IFV A;  1UL1 A;  2NTI C;  3V60 B;  5CFK A;  3HSL X;  3FDS D;  3V61 B;  2HII C;  3V62 B;  2AVT A;  5DA7 A;  3VKX A;  1IZ5 A;  3WGW A;  3TBL A;  1PLR A;  3U60 F;  5A6D A;  1T6L A;  1IZ4 A;  3AIX B;  3K4X A;  2IJX A;  2NTI B;  1B8H A;  3P87 A;  5AUJ A;  3AIZ A;  1UD9 A;  2HIK A;  5IY4 A;  3A1J A;  1VYJ A;  4L60 A;  3GGR A;  2ZVV A;  2IX2 A;  2HIK B;  4CS5 A;  3A2F B;  3U5Z F;  3GGR B;  3G65 A;  4YHR A;  4TR6 A;  3AIZ C;  1VYM A;  4D2G A;  5IWD A;  1ISQ A; 
#chains in the Genus database with same CATH homology
 3I2M X;  2HIK C;  5E0U A;  3F1W A;  1AXC A;  3G65 B;  1SXJ F;  1B77 A;  3GGR C;  1PLQ A;  1U76 A;  1W60 A;  2IO4 A;  2ZVK A;  2ZVW A;  2AWA A;  3G65 C;  5HAC A;  5H0T A;  3A1J B;  5E0T A;  3LX2 A;  5B7O A;  2IX2 B;  1YYP A;  3GPM A;  1RXZ A;  3P83 A;  2Z0L A;  3U61 F;  4L6P A;  3P91 A;  3A1J C;  3HI8 A;  5JNE D;  1CZD A;  5DAI A;  1GE8 A;  3GPN A;  2ZVM A;  2IX2 C;  4HK1 A;  2IZO C;  1RXM A;  1DML A;  3AIX A;  4RJF A;  2ZVL A;  3LX1 A;  2NTI A;  4ZTD A;  5E0V A;  2HII A;  3FDS C;  2IO4 B;  5IXA A;  2OD8 A;  2IZO B;  1U7B A;  2HII B;  1RWZ A;  3IFV A;  1UL1 A;  2NTI C;  3V60 B;  5CFK A;  3HSL X;  3FDS D;  3V61 B;  2HII C;  3V62 B;  2AVT A;  5DA7 A;  3VKX A;  1IZ5 A;  3WGW A;  3TBL A;  1PLR A;  3U60 F;  5A6D A;  1T6L A;  1IZ4 A;  3AIX B;  3K4X A;  2IJX A;  2NTI B;  1B8H A;  3P87 A;  5AUJ A;  3AIZ A;  1UD9 A;  2HIK A;  5IY4 A;  3A1J A;  1VYJ A;  4L60 A;  3GGR A;  2ZVV A;  2IX2 A;  2HIK B;  4CS5 A;  3A2F B;  3U5Z F;  3GGR B;  3G65 A;  4YHR A;  4TR6 A;  3AIZ C;  1VYM A;  4D2G A;  5IWD A;  1ISQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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