The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
59
|
sequence length |
247
|
structure length |
247
|
Chain Sequence |
PFEVVFDGAKEFADLIATASNLIDEAAFKFTEEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDQFKKILKRGKAKDTLILRKGDENFLEITFEGTAKRTFRLPLIDVEELELELPELPFTAKVVLLGEVLKEGIKDASLVSDAIKFIAKENEFTMKAEGETNEVEIRLTLEDEGLLDLEVEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTFLLAPRVE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp.
pubmed doi rcsb |
| molecule tags |
Dna binding protein/inhibitor
|
| source organism |
Thermococcus kodakarensis (strain atcc baa-918 / jcm 12380 / kod1)
|
| molecule keywords |
DNA polymerase sliding clamp 1, Proliferating cell nuclear a
|
| total genus |
59
|
| structure length |
247
|
| sequence length |
247
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2015-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00705 | PCNA_N | Proliferating cell nuclear antigen, N-terminal domain |
| A | PF02747 | PCNA_C | Proliferating cell nuclear antigen, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Box | Proliferating Cell Nuclear Antigen | Proliferating Cell Nuclear Antigen |
#chains in the Genus database with same CATH superfamily 3LX2 A; 3A1J A; 4HK1 A; 3GGR C; 3A1J B; 1RWZ A; 2Z0L A; 4D2G A; 1IZ4 A; 3AIZ A; 5A6D A; 2HII A; 1AXC A; 2ZVK A; 1CZD A; 2OD8 A; 3FDS D; 3HI8 A; 2IX2 A; 3G65 B; 4YHR A; 3P87 A; 2IO4 B; 5AUJ A; 3HSL X; 5JNE D; 2IZO B; 2ZVM A; 3GGR A; 1B8H A; 2AWA A; 2AVT A; 1VYJ A; 1DML A; 2NTI C; 3AIX B; 4RJF A; 2IZO C; 3FDS C; 1W60 A; 1U7B A; 2IJX A; 4ZTD A; 3V61 B; 5E0U A; 5E0V A; 5IY4 A; 3V60 B; 3G65 A; 5IWD A; 3K4X A; 3IFV A; 2IO4 A; 2ZVW A; 5E0T A; 3U61 F; 3V62 B; 2NTI B; 3AIX A; 5B7O A; 3F1W A; 4TR6 A; 3P83 A; 3A2F B; 1T6L A; 1GE8 A; 2HIK C; 4CS5 A; 5HAC A; 3AIZ C; 3GPN A; 3U5Z F; 2NTI A; 2ZVV A; 1B77 A; 2IX2 C; 1IZ5 A; 1UL1 A; 1PLQ A; 5DAI A; 1RXZ A; 1PLR A; 2ZVL A; 3TBL A; 1UD9 A; 2HIK A; 5DA7 A; 4L60 A; 2HIK B; 3VKX A; 3GPM A; 3A1J C; 1U76 A; 5H0T A; 1YYP A; 3I2M X; 2HII B; 4L6P A; 3WGW A; 5CFK A; 2IX2 B; 1SXJ F; 3U60 F; 3P91 A; 2HII C; 5IXA A; 3G65 C; 1ISQ A; 3LX1 A; 1RXM A; 1VYM A; 3GGR B; #chains in the Genus database with same CATH topology 3LX2 A; 3A1J A; 4HK1 A; 3GGR C; 3A1J B; 1RWZ A; 2Z0L A; 4D2G A; 1IZ4 A; 3AIZ A; 5A6D A; 2HII A; 1AXC A; 2ZVK A; 1CZD A; 2OD8 A; 3FDS D; 3HI8 A; 2IX2 A; 3G65 B; 4YHR A; 3P87 A; 2IO4 B; 5AUJ A; 3HSL X; 5JNE D; 2IZO B; 2ZVM A; 3GGR A; 1B8H A; 2AWA A; 2AVT A; 1VYJ A; 1DML A; 2NTI C; 3AIX B; 4RJF A; 2IZO C; 3FDS C; 1W60 A; 1U7B A; 2IJX A; 4ZTD A; 3V61 B; 5E0U A; 5E0V A; 5IY4 A; 3V60 B; 3G65 A; 5IWD A; 3K4X A; 3IFV A; 2IO4 A; 2ZVW A; 5E0T A; 3U61 F; 3V62 B; 2NTI B; 3AIX A; 5B7O A; 3F1W A; 4TR6 A; 3P83 A; 3A2F B; 1T6L A; 1GE8 A; 2HIK C; 4CS5 A; 5HAC A; 3AIZ C; 3GPN A; 3U5Z F; 2NTI A; 2ZVV A; 1B77 A; 2IX2 C; 1IZ5 A; 1UL1 A; 1PLQ A; 5DAI A; 1RXZ A; 1PLR A; 2ZVL A; 3TBL A; 1UD9 A; 2HIK A; 5DA7 A; 4L60 A; 2HIK B; 3VKX A; 3GPM A; 3A1J C; 1U76 A; 5H0T A; 1YYP A; 3I2M X; 2HII B; 4L6P A; 3WGW A; 5CFK A; 2IX2 B; 1SXJ F; 3U60 F; 3P91 A; 2HII C; 5IXA A; 3G65 C; 1ISQ A; 3LX1 A; 1RXM A; 1VYM A; 3GGR B; #chains in the Genus database with same CATH homology 3LX2 A; 3A1J A; 4HK1 A; 3GGR C; 3A1J B; 1RWZ A; 2Z0L A; 4D2G A; 1IZ4 A; 3AIZ A; 5A6D A; 2HII A; 1AXC A; 2ZVK A; 1CZD A; 2OD8 A; 3FDS D; 3HI8 A; 2IX2 A; 3G65 B; 4YHR A; 3P87 A; 2IO4 B; 5AUJ A; 3HSL X; 5JNE D; 2IZO B; 2ZVM A; 3GGR A; 1B8H A; 2AWA A; 2AVT A; 1VYJ A; 1DML A; 2NTI C; 3AIX B; 4RJF A; 2IZO C; 3FDS C; 1W60 A; 1U7B A; 2IJX A; 4ZTD A; 3V61 B; 5E0U A; 5E0V A; 5IY4 A; 3V60 B; 3G65 A; 5IWD A; 3K4X A; 3IFV A; 2IO4 A; 2ZVW A; 5E0T A; 3U61 F; 3V62 B; 2NTI B; 3AIX A; 5B7O A; 3F1W A; 4TR6 A; 3P83 A; 3A2F B; 1T6L A; 1GE8 A; 2HIK C; 4CS5 A; 5HAC A; 3AIZ C; 3GPN A; 3U5Z F; 2NTI A; 2ZVV A; 1B77 A; 2IX2 C; 1IZ5 A; 1UL1 A; 1PLQ A; 5DAI A; 1RXZ A; 1PLR A; 2ZVL A; 3TBL A; 1UD9 A; 2HIK A; 5DA7 A; 4L60 A; 2HIK B; 3VKX A; 3GPM A; 3A1J C; 1U76 A; 5H0T A; 1YYP A; 3I2M X; 2HII B; 4L6P A; 3WGW A; 5CFK A; 2IX2 B; 1SXJ F; 3U60 F; 3P91 A; 2HII C; 5IXA A; 3G65 C; 1ISQ A; 3LX1 A; 1RXM A; 1VYM A; 3GGR B;
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