5DAIA

Proliferating cell nuclear antigen homolog 1 bound to fen-1 peptide
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
247
structure length
247
Chain Sequence
PFEVVFDGAKEFADLIATASNLIDEAAFKFTEEGISMRAMDPSRVVLIDLNLPESIFSKYEVEEPETIGINMDQFKKILKRGKAKDTLILRKGDENFLEITFEGTAKRTFRLPLIDVEELELELPELPFTAKVVLLGEVLKEGIKDASLVSDAIKFIAKENEFTMKAEGETNEVEIRLTLEDEGLLDLEVEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTFLLAPRVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA polymerase sliding clamp 1
publication title A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp.
pubmed doi rcsb
source organism Thermococcus kodakarensis (strain atcc baa-918 / jcm 12380 / kod1)
total genus 60
structure length 247
sequence length 247
ec nomenclature
pdb deposition date 2015-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 5daiA00
5H0TA 2IX2A 5IY4A 2ZVKA 1GE8A 1RWZA 1B8HA 3V60B 1YYPA 2IO4A 4HK1A 5E0TA 2AWAA 3V62B 5DAIA 1PLQA 1RXZA 1VYMA 5A6DA 3I2MX 4CS5A 3IFVA 4RJFA 3P83A 1AXCA 3AIZC 4YHRA 2HIIC 5JNED 3WGWA 3A1JB 2Z0LA 5HACA 2HIKB 3G65B 3GPMA 2AVTA 4ZTDA 3V61B 3TBLA 2IJXA 3LX1A 3K4XA 1UL1A 5IWDA 3AIZA 1B77A 3AIXB 2HIIA 2IZOB 3A1JC 2HIKC 3G65C 3P87A 2ZVMA 2ZVWA 5B7OA 3F1WA 4TR6A 1UD9A 2ZVVA 3LX2A 2NTIB 3GPNA 2IZOC 2OD8A 3VKXA 3A1JA 1IZ4A 2HIKA 3G65A 4L60A 1U7BA 1CZDA 3U5ZF 2NTIC 1W60A 3P91A 5IXAA 1VYJA 3HSLX 3AIXA 5AUJA 3GGRB 4D2GA 2IX2B 5E0UA 1RXMA 2NTIA 1IZ5A 3U60F 5DA7A 2IO4B 3GGRC 1U76A 2HIIB 3FDSC 3FDSD 1DMLA 4L6PA 3A2FB 2IX2C 3HI8A 1SXJF 1ISQA 1T6LA 5E0VA 5CFKA 3GGRA 1PLRA 3U61F 2ZVLA
chains in the Genus database with same CATH superfamily
5H0TA 2IX2A 5IY4A 2ZVKA 1GE8A 1RWZA 1B8HA 3V60B 1YYPA 2IO4A 4HK1A 5E0TA 2AWAA 3V62B 5DAIA 1PLQA 1RXZA 1VYMA 5A6DA 3I2MX 4CS5A 3IFVA 4RJFA 3P83A 1AXCA 3AIZC 4YHRA 2HIIC 5JNED 3WGWA 3A1JB 2Z0LA 5HACA 2HIKB 3G65B 3GPMA 2AVTA 4ZTDA 3V61B 3TBLA 2IJXA 3LX1A 3K4XA 1UL1A 5IWDA 3AIZA 1B77A 3AIXB 2HIIA 2IZOB 3A1JC 2HIKC 3G65C 3P87A 2ZVMA 2ZVWA 5B7OA 3F1WA 4TR6A 1UD9A 2ZVVA 3LX2A 2NTIB 3GPNA 2IZOC 2OD8A 3VKXA 3A1JA 1IZ4A 2HIKA 3G65A 4L60A 1U7BA 1CZDA 3U5ZF 2NTIC 1W60A 3P91A 5IXAA 1VYJA 3HSLX 3AIXA 5AUJA 3GGRB 4D2GA 2IX2B 5E0UA 1RXMA 2NTIA 1IZ5A 3U60F 5DA7A 2IO4B 3GGRC 1U76A 2HIIB 3FDSC 3FDSD 1DMLA 4L6PA 3A2FB 2IX2C 3HI8A 1SXJF 1ISQA 1T6LA 5E0VA 5CFKA 3GGRA 1PLRA 3U61F 2ZVLA
chains in the Genus database with same CATH topology
5H0TA 2IX2A 5IY4A 2ZVKA 1GE8A 1RWZA 1B8HA 3V60B 1YYPA 2IO4A 4HK1A 5E0TA 2AWAA 3V62B 5DAIA 1PLQA 1RXZA 1VYMA 5A6DA 3I2MX 4CS5A 3IFVA 4RJFA 3P83A 1AXCA 3AIZC 4YHRA 2HIIC 5JNED 3WGWA 3A1JB 2Z0LA 5HACA 2HIKB 3G65B 3GPMA 2AVTA 4ZTDA 3V61B 3TBLA 2IJXA 3LX1A 3K4XA 1UL1A 5IWDA 3AIZA 1B77A 3AIXB 2HIIA 2IZOB 3A1JC 2HIKC 3G65C 3P87A 2ZVMA 2ZVWA 5B7OA 3F1WA 4TR6A 1UD9A 2ZVVA 3LX2A 2NTIB 3GPNA 2IZOC 2OD8A 3VKXA 3A1JA 1IZ4A 2HIKA 3G65A 4L60A 1U7BA 1CZDA 3U5ZF 2NTIC 1W60A 3P91A 5IXAA 1VYJA 3HSLX 3AIXA 5AUJA 3GGRB 4D2GA 2IX2B 5E0UA 1RXMA 2NTIA 1IZ5A 3U60F 5DA7A 2IO4B 3GGRC 1U76A 2HIIB 3FDSC 3FDSD 1DMLA 4L6PA 3A2FB 2IX2C 3HI8A 1SXJF 1ISQA 1T6LA 5E0VA 5CFKA 3GGRA 1PLRA 3U61F 2ZVLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H0T A;  2IX2 A;  5IY4 A;  2ZVK A;  1GE8 A;  1RWZ A;  1B8H A;  3V60 B;  1YYP A;  2IO4 A;  4HK1 A;  5E0T A;  2AWA A;  3V62 B;  5DAI A;  1PLQ A;  1RXZ A;  1VYM A;  5A6D A;  3I2M X;  4CS5 A;  3IFV A;  4RJF A;  3P83 A;  1AXC A;  3AIZ C;  4YHR A;  2HII C;  5JNE D;  3WGW A;  3A1J B;  2Z0L A;  5HAC A;  2HIK B;  3G65 B;  3GPM A;  2AVT A;  4ZTD A;  3V61 B;  3TBL A;  2IJX A;  3LX1 A;  3K4X A;  1UL1 A;  5IWD A;  3AIZ A;  1B77 A;  3AIX B;  2HII A;  2IZO B;  3A1J C;  2HIK C;  3G65 C;  3P87 A;  2ZVM A;  2ZVW A;  5B7O A;  3F1W A;  4TR6 A;  1UD9 A;  2ZVV A;  3LX2 A;  2NTI B;  3GPN A;  2IZO C;  2OD8 A;  3VKX A;  3A1J A;  1IZ4 A;  2HIK A;  3G65 A;  4L60 A;  1U7B A;  1CZD A;  3U5Z F;  2NTI C;  1W60 A;  3P91 A;  5IXA A;  1VYJ A;  3HSL X;  3AIX A;  5AUJ A;  3GGR B;  4D2G A;  2IX2 B;  5E0U A;  1RXM A;  2NTI A;  1IZ5 A;  3U60 F;  5DA7 A;  2IO4 B;  3GGR C;  1U76 A;  2HII B;  3FDS C;  3FDS D;  1DML A;  4L6P A;  3A2F B;  2IX2 C;  3HI8 A;  1SXJ F;  1ISQ A;  1T6L A;  5E0V A;  5CFK A;  3GGR A;  1PLR A;  3U61 F;  2ZVL A; 
#chains in the Genus database with same CATH topology
 5H0T A;  2IX2 A;  5IY4 A;  2ZVK A;  1GE8 A;  1RWZ A;  1B8H A;  3V60 B;  1YYP A;  2IO4 A;  4HK1 A;  5E0T A;  2AWA A;  3V62 B;  5DAI A;  1PLQ A;  1RXZ A;  1VYM A;  5A6D A;  3I2M X;  4CS5 A;  3IFV A;  4RJF A;  3P83 A;  1AXC A;  3AIZ C;  4YHR A;  2HII C;  5JNE D;  3WGW A;  3A1J B;  2Z0L A;  5HAC A;  2HIK B;  3G65 B;  3GPM A;  2AVT A;  4ZTD A;  3V61 B;  3TBL A;  2IJX A;  3LX1 A;  3K4X A;  1UL1 A;  5IWD A;  3AIZ A;  1B77 A;  3AIX B;  2HII A;  2IZO B;  3A1J C;  2HIK C;  3G65 C;  3P87 A;  2ZVM A;  2ZVW A;  5B7O A;  3F1W A;  4TR6 A;  1UD9 A;  2ZVV A;  3LX2 A;  2NTI B;  3GPN A;  2IZO C;  2OD8 A;  3VKX A;  3A1J A;  1IZ4 A;  2HIK A;  3G65 A;  4L60 A;  1U7B A;  1CZD A;  3U5Z F;  2NTI C;  1W60 A;  3P91 A;  5IXA A;  1VYJ A;  3HSL X;  3AIX A;  5AUJ A;  3GGR B;  4D2G A;  2IX2 B;  5E0U A;  1RXM A;  2NTI A;  1IZ5 A;  3U60 F;  5DA7 A;  2IO4 B;  3GGR C;  1U76 A;  2HII B;  3FDS C;  3FDS D;  1DML A;  4L6P A;  3A2F B;  2IX2 C;  3HI8 A;  1SXJ F;  1ISQ A;  1T6L A;  5E0V A;  5CFK A;  3GGR A;  1PLR A;  3U61 F;  2ZVL A; 
#chains in the Genus database with same CATH homology
 5H0T A;  2IX2 A;  5IY4 A;  2ZVK A;  1GE8 A;  1RWZ A;  1B8H A;  3V60 B;  1YYP A;  2IO4 A;  4HK1 A;  5E0T A;  2AWA A;  3V62 B;  5DAI A;  1PLQ A;  1RXZ A;  1VYM A;  5A6D A;  3I2M X;  4CS5 A;  3IFV A;  4RJF A;  3P83 A;  1AXC A;  3AIZ C;  4YHR A;  2HII C;  5JNE D;  3WGW A;  3A1J B;  2Z0L A;  5HAC A;  2HIK B;  3G65 B;  3GPM A;  2AVT A;  4ZTD A;  3V61 B;  3TBL A;  2IJX A;  3LX1 A;  3K4X A;  1UL1 A;  5IWD A;  3AIZ A;  1B77 A;  3AIX B;  2HII A;  2IZO B;  3A1J C;  2HIK C;  3G65 C;  3P87 A;  2ZVM A;  2ZVW A;  5B7O A;  3F1W A;  4TR6 A;  1UD9 A;  2ZVV A;  3LX2 A;  2NTI B;  3GPN A;  2IZO C;  2OD8 A;  3VKX A;  3A1J A;  1IZ4 A;  2HIK A;  3G65 A;  4L60 A;  1U7B A;  1CZD A;  3U5Z F;  2NTI C;  1W60 A;  3P91 A;  5IXA A;  1VYJ A;  3HSL X;  3AIX A;  5AUJ A;  3GGR B;  4D2G A;  2IX2 B;  5E0U A;  1RXM A;  2NTI A;  1IZ5 A;  3U60 F;  5DA7 A;  2IO4 B;  3GGR C;  1U76 A;  2HII B;  3FDS C;  3FDS D;  1DML A;  4L6P A;  3A2F B;  2IX2 C;  3HI8 A;  1SXJ F;  1ISQ A;  1T6L A;  5E0V A;  5CFK A;  3GGR A;  1PLR A;  3U61 F;  2ZVL A; 
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similar chains in the Genus database (?% sequence similarity)
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