5IXAA

Hcmv dna polymerase processivity subunit ul44 at neutral ph and low salt
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
263
structure length
250
Chain Sequence
SEPPTLALRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKSFQPKTINNSTPLLGNFMYLTSSKDLTKFYVQDISDLSAKISMCAPDFNMEFSSACVHGQDIVRESENSAVHVDLDFGVVADLLKWIGPHTGTVQILVHAGPPAIKFILTNGSELEFTSNNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPCTLRIVTEHDTLLYVASRNGLFAVENFLTEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
molecule keywords DNA polymerase processivity factor
publication title A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions.
pubmed doi rcsb
source organism Human cytomegalovirus (strain ad169)
total genus 62
structure length 250
sequence length 263
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03325 Herpes_PAP Herpesvirus polymerase accessory protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 5ixaA00
1IZ4A 1GE8A 1U76A 3LX1A 2HIIC 1RXMA 2IX2C 2IO4A 2ZVLA 5E0TA 1W60A 2AVTA 3I2MX 4YHRA 4L6PA 3G65B 5DAIA 3GGRA 3V62B 1AXCA 1RXZA 1PLRA 3V60B 3A1JA 3AIZC 5JNED 3IFVA 3P91A 2IJXA 2AWAA 5CFKA 2HIKA 1U7BA 2IZOB 3FDSC 3GGRB 3P83A 3G65C 5E0UA 3A2FB 4HK1A 4CS5A 3A1JB 5AUJA 2NTIA 2OD8A 5HACA 3HSLX 3GPNA 3VKXA 1ISQA 3U60F 2HIKB 1DMLA 3FDSD 1B77A 2IZOC 3GGRC 3AIXA 1YYPA 3U61F 3V61B 3K4XA 3GPMA 2NTIB 3A1JC 3LX2A 1UL1A 5H0TA 4ZTDA 2HIKC 2HIIA 2IX2A 5DA7A 3WGWA 3AIXB 4TR6A 5IXAA 1CZDA 1PLQA 2NTIC 2ZVWA 1B8HA 1IZ5A 1VYJA 2ZVKA 5E0VA 3AIZA 5IWDA 2HIIB 3TBLA 5A6DA 3F1WA 2IX2B 1VYMA 4RJFA 3HI8A 1RWZA 4L60A 5IY4A 5B7OA 1T6LA 2ZVVA 3P87A 4D2GA 2ZVMA 2Z0LA 3G65A 3U5ZF 1UD9A 1SXJF 2IO4B
chains in the Genus database with same CATH superfamily
1IZ4A 1GE8A 1U76A 3LX1A 2HIIC 1RXMA 2IX2C 2IO4A 2ZVLA 5E0TA 1W60A 2AVTA 3I2MX 4YHRA 4L6PA 3G65B 5DAIA 3GGRA 3V62B 1AXCA 1RXZA 1PLRA 3V60B 3A1JA 3AIZC 5JNED 3IFVA 3P91A 2IJXA 2AWAA 5CFKA 2HIKA 1U7BA 2IZOB 3FDSC 3GGRB 3P83A 3G65C 5E0UA 3A2FB 4HK1A 4CS5A 3A1JB 5AUJA 2NTIA 2OD8A 5HACA 3HSLX 3GPNA 3VKXA 1ISQA 3U60F 2HIKB 1DMLA 3FDSD 1B77A 2IZOC 3GGRC 3AIXA 1YYPA 3U61F 3V61B 3K4XA 3GPMA 2NTIB 3A1JC 3LX2A 1UL1A 5H0TA 4ZTDA 2HIKC 2HIIA 2IX2A 5DA7A 3WGWA 3AIXB 4TR6A 5IXAA 1CZDA 1PLQA 2NTIC 2ZVWA 1B8HA 1IZ5A 1VYJA 2ZVKA 5E0VA 3AIZA 5IWDA 2HIIB 3TBLA 5A6DA 3F1WA 2IX2B 1VYMA 4RJFA 3HI8A 1RWZA 4L60A 5IY4A 5B7OA 1T6LA 2ZVVA 3P87A 4D2GA 2ZVMA 2Z0LA 3G65A 3U5ZF 1UD9A 1SXJF 2IO4B
chains in the Genus database with same CATH topology
1IZ4A 1GE8A 1U76A 3LX1A 2HIIC 1RXMA 2IX2C 2IO4A 2ZVLA 5E0TA 1W60A 2AVTA 3I2MX 4YHRA 4L6PA 3G65B 5DAIA 3GGRA 3V62B 1AXCA 1RXZA 1PLRA 3V60B 3A1JA 3AIZC 5JNED 3IFVA 3P91A 2IJXA 2AWAA 5CFKA 2HIKA 1U7BA 2IZOB 3FDSC 3GGRB 3P83A 3G65C 5E0UA 3A2FB 4HK1A 4CS5A 3A1JB 5AUJA 2NTIA 2OD8A 5HACA 3HSLX 3GPNA 3VKXA 1ISQA 3U60F 2HIKB 1DMLA 3FDSD 1B77A 2IZOC 3GGRC 3AIXA 1YYPA 3U61F 3V61B 3K4XA 3GPMA 2NTIB 3A1JC 3LX2A 1UL1A 5H0TA 4ZTDA 2HIKC 2HIIA 2IX2A 5DA7A 3WGWA 3AIXB 4TR6A 5IXAA 1CZDA 1PLQA 2NTIC 2ZVWA 1B8HA 1IZ5A 1VYJA 2ZVKA 5E0VA 3AIZA 5IWDA 2HIIB 3TBLA 5A6DA 3F1WA 2IX2B 1VYMA 4RJFA 3HI8A 1RWZA 4L60A 5IY4A 5B7OA 1T6LA 2ZVVA 3P87A 4D2GA 2ZVMA 2Z0LA 3G65A 3U5ZF 1UD9A 1SXJF 2IO4B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IZ4 A;  1GE8 A;  1U76 A;  3LX1 A;  2HII C;  1RXM A;  2IX2 C;  2IO4 A;  2ZVL A;  5E0T A;  1W60 A;  2AVT A;  3I2M X;  4YHR A;  4L6P A;  3G65 B;  5DAI A;  3GGR A;  3V62 B;  1AXC A;  1RXZ A;  1PLR A;  3V60 B;  3A1J A;  3AIZ C;  5JNE D;  3IFV A;  3P91 A;  2IJX A;  2AWA A;  5CFK A;  2HIK A;  1U7B A;  2IZO B;  3FDS C;  3GGR B;  3P83 A;  3G65 C;  5E0U A;  3A2F B;  4HK1 A;  4CS5 A;  3A1J B;  5AUJ A;  2NTI A;  2OD8 A;  5HAC A;  3HSL X;  3GPN A;  3VKX A;  1ISQ A;  3U60 F;  2HIK B;  1DML A;  3FDS D;  1B77 A;  2IZO C;  3GGR C;  3AIX A;  1YYP A;  3U61 F;  3V61 B;  3K4X A;  3GPM A;  2NTI B;  3A1J C;  3LX2 A;  1UL1 A;  5H0T A;  4ZTD A;  2HIK C;  2HII A;  2IX2 A;  5DA7 A;  3WGW A;  3AIX B;  4TR6 A;  5IXA A;  1CZD A;  1PLQ A;  2NTI C;  2ZVW A;  1B8H A;  1IZ5 A;  1VYJ A;  2ZVK A;  5E0V A;  3AIZ A;  5IWD A;  2HII B;  3TBL A;  5A6D A;  3F1W A;  2IX2 B;  1VYM A;  4RJF A;  3HI8 A;  1RWZ A;  4L60 A;  5IY4 A;  5B7O A;  1T6L A;  2ZVV A;  3P87 A;  4D2G A;  2ZVM A;  2Z0L A;  3G65 A;  3U5Z F;  1UD9 A;  1SXJ F;  2IO4 B; 
#chains in the Genus database with same CATH topology
 1IZ4 A;  1GE8 A;  1U76 A;  3LX1 A;  2HII C;  1RXM A;  2IX2 C;  2IO4 A;  2ZVL A;  5E0T A;  1W60 A;  2AVT A;  3I2M X;  4YHR A;  4L6P A;  3G65 B;  5DAI A;  3GGR A;  3V62 B;  1AXC A;  1RXZ A;  1PLR A;  3V60 B;  3A1J A;  3AIZ C;  5JNE D;  3IFV A;  3P91 A;  2IJX A;  2AWA A;  5CFK A;  2HIK A;  1U7B A;  2IZO B;  3FDS C;  3GGR B;  3P83 A;  3G65 C;  5E0U A;  3A2F B;  4HK1 A;  4CS5 A;  3A1J B;  5AUJ A;  2NTI A;  2OD8 A;  5HAC A;  3HSL X;  3GPN A;  3VKX A;  1ISQ A;  3U60 F;  2HIK B;  1DML A;  3FDS D;  1B77 A;  2IZO C;  3GGR C;  3AIX A;  1YYP A;  3U61 F;  3V61 B;  3K4X A;  3GPM A;  2NTI B;  3A1J C;  3LX2 A;  1UL1 A;  5H0T A;  4ZTD A;  2HIK C;  2HII A;  2IX2 A;  5DA7 A;  3WGW A;  3AIX B;  4TR6 A;  5IXA A;  1CZD A;  1PLQ A;  2NTI C;  2ZVW A;  1B8H A;  1IZ5 A;  1VYJ A;  2ZVK A;  5E0V A;  3AIZ A;  5IWD A;  2HII B;  3TBL A;  5A6D A;  3F1W A;  2IX2 B;  1VYM A;  4RJF A;  3HI8 A;  1RWZ A;  4L60 A;  5IY4 A;  5B7O A;  1T6L A;  2ZVV A;  3P87 A;  4D2G A;  2ZVM A;  2Z0L A;  3G65 A;  3U5Z F;  1UD9 A;  1SXJ F;  2IO4 B; 
#chains in the Genus database with same CATH homology
 1IZ4 A;  1GE8 A;  1U76 A;  3LX1 A;  2HII C;  1RXM A;  2IX2 C;  2IO4 A;  2ZVL A;  5E0T A;  1W60 A;  2AVT A;  3I2M X;  4YHR A;  4L6P A;  3G65 B;  5DAI A;  3GGR A;  3V62 B;  1AXC A;  1RXZ A;  1PLR A;  3V60 B;  3A1J A;  3AIZ C;  5JNE D;  3IFV A;  3P91 A;  2IJX A;  2AWA A;  5CFK A;  2HIK A;  1U7B A;  2IZO B;  3FDS C;  3GGR B;  3P83 A;  3G65 C;  5E0U A;  3A2F B;  4HK1 A;  4CS5 A;  3A1J B;  5AUJ A;  2NTI A;  2OD8 A;  5HAC A;  3HSL X;  3GPN A;  3VKX A;  1ISQ A;  3U60 F;  2HIK B;  1DML A;  3FDS D;  1B77 A;  2IZO C;  3GGR C;  3AIX A;  1YYP A;  3U61 F;  3V61 B;  3K4X A;  3GPM A;  2NTI B;  3A1J C;  3LX2 A;  1UL1 A;  5H0T A;  4ZTD A;  2HIK C;  2HII A;  2IX2 A;  5DA7 A;  3WGW A;  3AIX B;  4TR6 A;  5IXA A;  1CZD A;  1PLQ A;  2NTI C;  2ZVW A;  1B8H A;  1IZ5 A;  1VYJ A;  2ZVK A;  5E0V A;  3AIZ A;  5IWD A;  2HII B;  3TBL A;  5A6D A;  3F1W A;  2IX2 B;  1VYM A;  4RJF A;  3HI8 A;  1RWZ A;  4L60 A;  5IY4 A;  5B7O A;  1T6L A;  2ZVV A;  3P87 A;  4D2G A;  2ZVM A;  2Z0L A;  3G65 A;  3U5Z F;  1UD9 A;  1SXJ F;  2IO4 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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