1BETA

New protein fold revealed by a 2.3 angstrom resolution crystal structure of nerve growth factor
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
107
structure length
107
Chain Sequence
GEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTACVCVLSRKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS8 (96-114)TIV2 (43-46)TVIII1 (13-16)O1 (15-80)S1 (17-22)S7 (76-93)TIV1 (22-25)S2 (27-29)TI1 (30-33)S4 (41-44)S5 (47-50)TI3 (72-75)TII1 (68-71)S6 (53-58)TI2 (64-67)TIV4 (93-96)TVIII2 (58-61)S3 (35-38)TVIII3 (60-63)TVIII4 (62-65)Updating...
connected with : NaN
publication title New protein fold revealed by a 2.3-A resolution crystal structure of nerve growth factor.
pubmed doi rcsb
molecule keywords BETA-NERVE GROWTH FACTOR
molecule tags Growth factor
source organism Mus musculus
total genus 18
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 1993-04-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1betA00
3RJRA 3FUBB 2X1XE 2VXSA 1WQ8A 4YCGC 1FZVA 1BETA 1TFGA 1VPFA 4UI0A 1SGFB 2C7WA 4QAFC 1E9JA 5BQCA 2P6AA 3IJ2A 1KLCA 1WWWV 2XV7A 3MJKA 4UI1A 4WPBA 1FL7B 4MQWB 4UHZA 3QTKA 1NYSB 1BNDB 1M4UL 1TZIV 4LXSJ 1NYUB 3SEKB 5BQ8A 2GOOA 1WQ9B 1HCNB 5BQEB 1TGKA 4HSAA 4EDWV 1MKGA 2ARPA 5E4GA 4AY9A 2QCWA 3S1KV 5BPUA 1HRPA 2GNNA 5HI5A 4HQXA 5BQBA 1XWDB 5FV1V 2GH0C 1HCFA 1S4YB 4QCIC 5F3BC 4FAOA 2B0UA 1KLAA 2H64A 3BK3A 3E07A 4BV4L 3V2AA 2VWEA 1ZKZA 2QJAA 3BDYV 4KZNA 5HHVA 4MIDA 5BQ8D 2H62A 1REWA 5HI4A 1B8MB 1DZ7A 1VPPV 5JZ7A 1KATW 4X1JA 3P9WA 1TZHV 1B98A 1BJ1V 1SG1A 4GLSE 3MJGA 1QTYR 5F3HI 2R53A 5BQ8B 1REUA 1FLTV 4ZBNA 3KFDA 4UHYA 3V6BA 3BUKA 4KXZA 4EDXV 2BHKA 1ES7A 1FL7A 4AY9B 4EC7A 2FJGV 5HHCA 3QB4A 1BNDA 3JVFA 4UI2B 1QFWA 1NT3A 2QJ9A 3EVSB 2XACA 2GYZA 4KV5A 5HHXA 1WQ9A 1HCNA 2QR0C 4YCIC 5BQEA 4EFVA 5AEJA 5FV2V 2IFGE 3BMPA 4N1DA 1MJVA 5HHDA 1PDGA 1XWDA 1MKKA 1AGQA 2QJBA 5HK5E 3EO1C 1B8KA 2FJHV 2GYRA 4LXRJ 2R52A 1WAQA 1KTZA 5HI3A 1LXIA 1JPYA 2V5EB 2ARVA 3B4VA 2KD3A 2VPFA 4MQWA 1HRPB 4QHUC 4XPJA 1B8MA 4GLNE 5HK5A 4HQUA 1CZ8V 1HD4A 1BMPA 1TGJA 4HR9A 2QCQA 2ASKA 2TGIA 1QFWB 1RV6V 4EAXA 3HH2A 4MPLA 3S1BV 4ZFFC 1M4UA 2X1WA 2PJYA 1BTGA 1AOCA 1LX5A
chains in the Genus database with same CATH superfamily
3RJRA 3FUBB 2X1XE 2VXSA 1WQ8A 4YCGC 1FZVA 1BETA 1TFGA 1VPFA 4UI0A 1SGFB 2C7WA 4QAFC 1E9JA 5BQCA 2P6AA 3IJ2A 1KLCA 1WWWV 2XV7A 3MJKA 4UI1A 4WPBA 1FL7B 4MQWB 4UHZA 3QTKA 1NYSB 1BNDB 1M4UL 1TZIV 4LXSJ 1NYUB 3SEKB 5BQ8A 2GOOA 1WQ9B 1HCNB 5BQEB 1TGKA 4HSAA 4EDWV 1MKGA 2ARPA 5E4GA 4AY9A 2QCWA 3S1KV 5BPUA 1HRPA 2GNNA 5HI5A 4HQXA 5BQBA 1XWDB 5FV1V 2GH0C 1HCFA 1S4YB 4QCIC 5F3BC 4FAOA 2B0UA 1KLAA 2H64A 3BK3A 3E07A 4BV4L 3V2AA 2VWEA 1ZKZA 2QJAA 3BDYV 4KZNA 5HHVA 4MIDA 5BQ8D 2H62A 1REWA 5HI4A 1B8MB 1DZ7A 1VPPV 5JZ7A 1KATW 4X1JA 3P9WA 1TZHV 1B98A 1BJ1V 1SG1A 4GLSE 3MJGA 1QTYR 5F3HI 2R53A 5BQ8B 1REUA 1FLTV 4ZBNA 3KFDA 4UHYA 3V6BA 3BUKA 4KXZA 4EDXV 2BHKA 1ES7A 1FL7A 4AY9B 4EC7A 2FJGV 5HHCA 3QB4A 1BNDA 3JVFA 4UI2B 1QFWA 1NT3A 2QJ9A 3EVSB 2XACA 2GYZA 4KV5A 5HHXA 1WQ9A 1HCNA 2QR0C 4YCIC 5BQEA 4EFVA 5AEJA 5FV2V 2IFGE 3BMPA 4N1DA 1MJVA 5HHDA 1PDGA 1XWDA 1MKKA 1AGQA 2QJBA 5HK5E 3EO1C 1B8KA 2FJHV 2GYRA 4LXRJ 2R52A 1WAQA 1KTZA 5HI3A 1LXIA 1JPYA 2V5EB 2ARVA 3B4VA 2KD3A 2VPFA 4MQWA 1HRPB 4QHUC 4XPJA 1B8MA 4GLNE 5HK5A 4HQUA 1CZ8V 1HD4A 1BMPA 1TGJA 4HR9A 2QCQA 2ASKA 2TGIA 1QFWB 1RV6V 4EAXA 3HH2A 4MPLA 3S1BV 4ZFFC 1M4UA 2X1WA 2PJYA 1BTGA 1AOCA 1LX5A
chains in the Genus database with same CATH topology
3RJRA 3FUBB 2X1XE 2VXSA 1WQ8A 4YCGC 1FZVA 1BETA 1TFGA 1VPFA 4UI0A 1SGFB 2C7WA 4QAFC 1E9JA 5BQCA 2P6AA 3IJ2A 1KLCA 1WWWV 2XV7A 3MJKA 4UI1A 4WPBA 1FL7B 4MQWB 4UHZA 3QTKA 1NYSB 1BNDB 1M4UL 1TZIV 4LXSJ 1NYUB 3SEKB 5BQ8A 2GOOA 1WQ9B 1HCNB 5BQEB 1TGKA 4HSAA 4EDWV 1MKGA 2ARPA 5E4GA 4AY9A 2QCWA 3S1KV 5BPUA 1HRPA 2GNNA 5HI5A 4HQXA 5BQBA 1XWDB 5FV1V 2GH0C 1HCFA 1S4YB 4QCIC 5F3BC 4FAOA 2B0UA 1KLAA 2H64A 3BK3A 3E07A 4BV4L 3V2AA 2VWEA 1ZKZA 2QJAA 3BDYV 4KZNA 5HHVA 4MIDA 5BQ8D 2H62A 1REWA 5HI4A 1B8MB 1DZ7A 1VPPV 5JZ7A 1KATW 4X1JA 3P9WA 1TZHV 1B98A 1BJ1V 1SG1A 4GLSE 3MJGA 1QTYR 5F3HI 2R53A 5BQ8B 1REUA 1FLTV 4ZBNA 3KFDA 4UHYA 3V6BA 3BUKA 4KXZA 4EDXV 2BHKA 1ES7A 1FL7A 4AY9B 4EC7A 2FJGV 5HHCA 3QB4A 1BNDA 3JVFA 4UI2B 1QFWA 1NT3A 2QJ9A 3EVSB 2XACA 2GYZA 4KV5A 5HHXA 1WQ9A 1HCNA 2QR0C 4YCIC 5BQEA 4EFVA 5AEJA 5FV2V 2IFGE 3BMPA 4N1DA 1MJVA 5HHDA 1PDGA 1XWDA 1MKKA 1AGQA 2QJBA 5HK5E 3EO1C 1B8KA 2FJHV 2GYRA 4LXRJ 2R52A 1WAQA 1KTZA 5HI3A 1LXIA 1JPYA 2V5EB 2ARVA 3B4VA 2KD3A 2VPFA 4MQWA 1HRPB 4QHUC 4XPJA 1B8MA 4GLNE 5HK5A 4HQUA 1CZ8V 1HD4A 1BMPA 1TGJA 4HR9A 2QCQA 2ASKA 2TGIA 1QFWB 1RV6V 4EAXA 3HH2A 4MPLA 3S1BV 4ZFFC 1M4UA 2X1WA 2PJYA 1BTGA 1AOCA 1LX5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RJR A;  3FUB B;  2X1X E;  2VXS A;  1WQ8 A;  4YCG C;  1FZV A;  1BET A;  1TFG A;  1VPF A;  4UI0 A;  1SGF B;  2C7W A;  4QAF C;  1E9J A;  5BQC A;  2P6A A;  3IJ2 A;  1KLC A;  1WWW V;  2XV7 A;  3MJK A;  4UI1 A;  4WPB A;  1FL7 B;  4MQW B;  4UHZ A;  3QTK A;  1NYS B;  1BND B;  1M4U L;  1TZI V;  4LXS J;  1NYU B;  3SEK B;  5BQ8 A;  2GOO A;  1WQ9 B;  1HCN B;  5BQE B;  1TGK A;  4HSA A;  4EDW V;  1MKG A;  2ARP A;  5E4G A;  4AY9 A;  2QCW A;  3S1K V;  5BPU A;  1HRP A;  2GNN A;  5HI5 A;  4HQX A;  5BQB A;  1XWD B;  5FV1 V;  2GH0 C;  1HCF A;  1S4Y B;  4QCI C;  5F3B C;  4FAO A;  2B0U A;  1KLA A;  2H64 A;  3BK3 A;  3E07 A;  4BV4 L;  3V2A A;  2VWE A;  1ZKZ A;  2QJA A;  3BDY V;  4KZN A;  5HHV A;  4MID A;  5BQ8 D;  2H62 A;  1REW A;  5HI4 A;  1B8M B;  1DZ7 A;  1VPP V;  5JZ7 A;  1KAT W;  4X1J A;  3P9W A;  1TZH V;  1B98 A;  1BJ1 V;  1SG1 A;  4GLS E;  3MJG A;  1QTY R;  5F3H I;  2R53 A;  5BQ8 B;  1REU A;  1FLT V;  4ZBN A;  3KFD A;  4UHY A;  3V6B A;  3BUK A;  4KXZ A;  4EDX V;  2BHK A;  1ES7 A;  1FL7 A;  4AY9 B;  4EC7 A;  2FJG V;  5HHC A;  3QB4 A;  1BND A;  3JVF A;  4UI2 B;  1QFW A;  1NT3 A;  2QJ9 A;  3EVS B;  2XAC A;  2GYZ A;  4KV5 A;  5HHX A;  1WQ9 A;  1HCN A;  2QR0 C;  4YCI C;  5BQE A;  4EFV A;  5AEJ A;  5FV2 V;  2IFG E;  3BMP A;  4N1D A;  1MJV A;  5HHD A;  1PDG A;  1XWD A;  1MKK A;  1AGQ A;  2QJB A;  5HK5 E;  3EO1 C;  1B8K A;  2FJH V;  2GYR A;  4LXR J;  2R52 A;  1WAQ A;  1KTZ A;  5HI3 A;  1LXI A;  1JPY A;  2V5E B;  2ARV A;  3B4V A;  2KD3 A;  2VPF A;  4MQW A;  1HRP B;  4QHU C;  4XPJ A;  1B8M A;  4GLN E;  5HK5 A;  4HQU A;  1CZ8 V;  1HD4 A;  1BMP A;  1TGJ A;  4HR9 A;  2QCQ A;  2ASK A;  2TGI A;  1QFW B;  1RV6 V;  4EAX A;  3HH2 A;  4MPL A;  3S1B V;  4ZFF C;  1M4U A;  2X1W A;  2PJY A;  1BTG A;  1AOC A;  1LX5 A; 
#chains in the Genus database with same CATH topology
 3RJR A;  3FUB B;  2X1X E;  2VXS A;  1WQ8 A;  4YCG C;  1FZV A;  1BET A;  1TFG A;  1VPF A;  4UI0 A;  1SGF B;  2C7W A;  4QAF C;  1E9J A;  5BQC A;  2P6A A;  3IJ2 A;  1KLC A;  1WWW V;  2XV7 A;  3MJK A;  4UI1 A;  4WPB A;  1FL7 B;  4MQW B;  4UHZ A;  3QTK A;  1NYS B;  1BND B;  1M4U L;  1TZI V;  4LXS J;  1NYU B;  3SEK B;  5BQ8 A;  2GOO A;  1WQ9 B;  1HCN B;  5BQE B;  1TGK A;  4HSA A;  4EDW V;  1MKG A;  2ARP A;  5E4G A;  4AY9 A;  2QCW A;  3S1K V;  5BPU A;  1HRP A;  2GNN A;  5HI5 A;  4HQX A;  5BQB A;  1XWD B;  5FV1 V;  2GH0 C;  1HCF A;  1S4Y B;  4QCI C;  5F3B C;  4FAO A;  2B0U A;  1KLA A;  2H64 A;  3BK3 A;  3E07 A;  4BV4 L;  3V2A A;  2VWE A;  1ZKZ A;  2QJA A;  3BDY V;  4KZN A;  5HHV A;  4MID A;  5BQ8 D;  2H62 A;  1REW A;  5HI4 A;  1B8M B;  1DZ7 A;  1VPP V;  5JZ7 A;  1KAT W;  4X1J A;  3P9W A;  1TZH V;  1B98 A;  1BJ1 V;  1SG1 A;  4GLS E;  3MJG A;  1QTY R;  5F3H I;  2R53 A;  5BQ8 B;  1REU A;  1FLT V;  4ZBN A;  3KFD A;  4UHY A;  3V6B A;  3BUK A;  4KXZ A;  4EDX V;  2BHK A;  1ES7 A;  1FL7 A;  4AY9 B;  4EC7 A;  2FJG V;  5HHC A;  3QB4 A;  1BND A;  3JVF A;  4UI2 B;  1QFW A;  1NT3 A;  2QJ9 A;  3EVS B;  2XAC A;  2GYZ A;  4KV5 A;  5HHX A;  1WQ9 A;  1HCN A;  2QR0 C;  4YCI C;  5BQE A;  4EFV A;  5AEJ A;  5FV2 V;  2IFG E;  3BMP A;  4N1D A;  1MJV A;  5HHD A;  1PDG A;  1XWD A;  1MKK A;  1AGQ A;  2QJB A;  5HK5 E;  3EO1 C;  1B8K A;  2FJH V;  2GYR A;  4LXR J;  2R52 A;  1WAQ A;  1KTZ A;  5HI3 A;  1LXI A;  1JPY A;  2V5E B;  2ARV A;  3B4V A;  2KD3 A;  2VPF A;  4MQW A;  1HRP B;  4QHU C;  4XPJ A;  1B8M A;  4GLN E;  5HK5 A;  4HQU A;  1CZ8 V;  1HD4 A;  1BMP A;  1TGJ A;  4HR9 A;  2QCQ A;  2ASK A;  2TGI A;  1QFW B;  1RV6 V;  4EAX A;  3HH2 A;  4MPL A;  3S1B V;  4ZFF C;  1M4U A;  2X1W A;  2PJY A;  1BTG A;  1AOC A;  1LX5 A; 
#chains in the Genus database with same CATH homology
 3RJR A;  3FUB B;  2X1X E;  2VXS A;  1WQ8 A;  4YCG C;  1FZV A;  1BET A;  1TFG A;  1VPF A;  4UI0 A;  1SGF B;  2C7W A;  4QAF C;  1E9J A;  5BQC A;  2P6A A;  3IJ2 A;  1KLC A;  1WWW V;  2XV7 A;  3MJK A;  4UI1 A;  4WPB A;  1FL7 B;  4MQW B;  4UHZ A;  3QTK A;  1NYS B;  1BND B;  1M4U L;  1TZI V;  4LXS J;  1NYU B;  3SEK B;  5BQ8 A;  2GOO A;  1WQ9 B;  1HCN B;  5BQE B;  1TGK A;  4HSA A;  4EDW V;  1MKG A;  2ARP A;  5E4G A;  4AY9 A;  2QCW A;  3S1K V;  5BPU A;  1HRP A;  2GNN A;  5HI5 A;  4HQX A;  5BQB A;  1XWD B;  5FV1 V;  2GH0 C;  1HCF A;  1S4Y B;  4QCI C;  5F3B C;  4FAO A;  2B0U A;  1KLA A;  2H64 A;  3BK3 A;  3E07 A;  4BV4 L;  3V2A A;  2VWE A;  1ZKZ A;  2QJA A;  3BDY V;  4KZN A;  5HHV A;  4MID A;  5BQ8 D;  2H62 A;  1REW A;  5HI4 A;  1B8M B;  1DZ7 A;  1VPP V;  5JZ7 A;  1KAT W;  4X1J A;  3P9W A;  1TZH V;  1B98 A;  1BJ1 V;  1SG1 A;  4GLS E;  3MJG A;  1QTY R;  5F3H I;  2R53 A;  5BQ8 B;  1REU A;  1FLT V;  4ZBN A;  3KFD A;  4UHY A;  3V6B A;  3BUK A;  4KXZ A;  4EDX V;  2BHK A;  1ES7 A;  1FL7 A;  4AY9 B;  4EC7 A;  2FJG V;  5HHC A;  3QB4 A;  1BND A;  3JVF A;  4UI2 B;  1QFW A;  1NT3 A;  2QJ9 A;  3EVS B;  2XAC A;  2GYZ A;  4KV5 A;  5HHX A;  1WQ9 A;  1HCN A;  2QR0 C;  4YCI C;  5BQE A;  4EFV A;  5AEJ A;  5FV2 V;  2IFG E;  3BMP A;  4N1D A;  1MJV A;  5HHD A;  1PDG A;  1XWD A;  1MKK A;  1AGQ A;  2QJB A;  5HK5 E;  3EO1 C;  1B8K A;  2FJH V;  2GYR A;  4LXR J;  2R52 A;  1WAQ A;  1KTZ A;  5HI3 A;  1LXI A;  1JPY A;  2V5E B;  2ARV A;  3B4V A;  2KD3 A;  2VPF A;  4MQW A;  1HRP B;  4QHU C;  4XPJ A;  1B8M A;  4GLN E;  5HK5 A;  4HQU A;  1CZ8 V;  1HD4 A;  1BMP A;  1TGJ A;  4HR9 A;  2QCQ A;  2ASK A;  2TGI A;  1QFW B;  1RV6 V;  4EAX A;  3HH2 A;  4MPL A;  3S1B V;  4ZFF C;  1M4U A;  2X1W A;  2PJY A;  1BTG A;  1AOC A;  1LX5 A; 
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