The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
15
|
sequence length |
94
|
structure length |
94
|
Chain Sequence |
VVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Selection and analysis of an optimized anti-VEGF antibody: crystal structure of an affinity-matured Fab in complex with antigen.
pubmed doi rcsb |
| molecule keywords |
Vascular endothelial growth factor A
|
| molecule tags |
Immune system
|
| source organism |
Homo sapiens
|
| total genus |
15
|
| structure length |
94
|
| sequence length |
94
|
| chains with identical sequence |
W
|
| ec nomenclature | |
| pdb deposition date | 1999-09-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| V | PF00341 | PDGF | PDGF/VEGF domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines |
#chains in the Genus database with same CATH superfamily 4UI1 A; 1BND B; 4BV4 L; 1BND A; 4UHY A; 5HI4 A; 2X1X E; 3BDY V; 2FJH V; 1KTZ A; 3RJR A; 4MID A; 4HQX A; 3BK3 A; 2V5E B; 4EC7 A; 2ARP A; 1HD4 A; 5HI5 A; 4MPL A; 1NYS B; 4MQW B; 1E9J A; 1S4Y B; 2QR0 C; 5HHV A; 2GYZ A; 1HCN B; 3V6B A; 2GOO A; 1WQ8 A; 2ARV A; 5BQE B; 1BMP A; 1CZ8 V; 1FL7 B; 2VWE A; 1QFW B; 2QJ9 A; 1M4U A; 3BMP A; 5HHC A; 4ZBN A; 5FV2 V; 1HRP B; 2R53 A; 5FV1 V; 3S1K V; 1KAT W; 1JPY A; 1LX5 A; 1WQ9 A; 1BET A; 1TZH V; 2R52 A; 3B4V A; 1SG1 A; 4LXS J; 4X1J A; 4FAO A; 1PDG A; 4EDX V; 4GLS E; 4KV5 A; 4QCI C; 1REU A; 1AGQ A; 4YCG C; 3HH2 A; 3S1B V; 3BUK A; 3MJK A; 3P9W A; 5HHD A; 5HK5 A; 1MKG A; 4XPJ A; 4LXR J; 1B98 A; 2QCW A; 4HSA A; 4UI2 B; 3MJG A; 3QB4 A; 5BQ8 B; 5BQ8 A; 2QJA A; 4KXZ A; 3EO1 C; 3EVS B; 2BHK A; 1WAQ A; 2ASK A; 1AOC A; 2B0U A; 4QAF C; 5E4G A; 2X1W A; 1REW A; 4GLN E; 1QTY R; 2IFG E; 5F3B C; 1WQ9 B; 5HI3 A; 2P6A A; 5BQB A; 4QHU C; 1VPF A; 5BPU A; 5AEJ A; 1B8M A; 1M4U L; 1MJV A; 1MKK A; 2GYR A; 2KD3 A; 3FUB B; 4AY9 A; 4EFV A; 3QTK A; 1NYU B; 2H64 A; 1VPP V; 2GH0 C; 4HQU A; 2VPF A; 3V2A A; 2H62 A; 3JVF A; 1HCF A; 3E07 A; 5F3H I; 4YCI C; 1TFG A; 1KLA A; 1WWW V; 1ES7 A; 4UI0 A; 1BTG A; 1XWD A; 2PJY A; 5JZ7 A; 2VXS A; 2TGI A; 4N1D A; 1TZI V; 1B8K A; 1TGK A; 1FZV A; 2XV7 A; 4WPB A; 2XAC A; 1ZKZ A; 5HK5 E; 2C7W A; 1RV6 V; 4MQW A; 1B8M B; 1DZ7 A; 1BJ1 V; 1FLT V; 4EAX A; 5BQ8 D; 4AY9 B; 1HCN A; 2FJG V; 2GNN A; 5BQE A; 1FL7 A; 1QFW A; 3SEK B; 2QCQ A; 1KLC A; 4KZN A; 1NT3 A; 4EDW V; 1SGF B; 5BQC A; 4UHZ A; 1TGJ A; 5HHX A; 4ZFF C; 3IJ2 A; 3KFD A; 2QJB A; 1LXI A; 4HR9 A; 1XWD B; 1HRP A; #chains in the Genus database with same CATH topology 4UI1 A; 1BND B; 4BV4 L; 1BND A; 4UHY A; 5HI4 A; 2X1X E; 3BDY V; 2FJH V; 1KTZ A; 3RJR A; 4MID A; 4HQX A; 3BK3 A; 2V5E B; 4EC7 A; 2ARP A; 1HD4 A; 5HI5 A; 4MPL A; 1NYS B; 4MQW B; 1E9J A; 1S4Y B; 2QR0 C; 5HHV A; 2GYZ A; 1HCN B; 3V6B A; 2GOO A; 1WQ8 A; 2ARV A; 5BQE B; 1BMP A; 1CZ8 V; 1FL7 B; 2VWE A; 1QFW B; 2QJ9 A; 1M4U A; 3BMP A; 5HHC A; 4ZBN A; 5FV2 V; 1HRP B; 2R53 A; 5FV1 V; 3S1K V; 1KAT W; 1JPY A; 1LX5 A; 1WQ9 A; 1BET A; 1TZH V; 2R52 A; 3B4V A; 1SG1 A; 4LXS J; 4X1J A; 4FAO A; 1PDG A; 4EDX V; 4GLS E; 4KV5 A; 4QCI C; 1REU A; 1AGQ A; 4YCG C; 3HH2 A; 3S1B V; 3BUK A; 3MJK A; 3P9W A; 5HHD A; 5HK5 A; 1MKG A; 4XPJ A; 4LXR J; 1B98 A; 2QCW A; 4HSA A; 4UI2 B; 3MJG A; 3QB4 A; 5BQ8 B; 5BQ8 A; 2QJA A; 4KXZ A; 3EO1 C; 3EVS B; 2BHK A; 1WAQ A; 2ASK A; 1AOC A; 2B0U A; 4QAF C; 5E4G A; 2X1W A; 1REW A; 4GLN E; 1QTY R; 2IFG E; 5F3B C; 1WQ9 B; 5HI3 A; 2P6A A; 5BQB A; 4QHU C; 1VPF A; 5BPU A; 5AEJ A; 1B8M A; 1M4U L; 1MJV A; 1MKK A; 2GYR A; 2KD3 A; 3FUB B; 4AY9 A; 4EFV A; 3QTK A; 1NYU B; 2H64 A; 1VPP V; 2GH0 C; 4HQU A; 2VPF A; 3V2A A; 2H62 A; 3JVF A; 1HCF A; 3E07 A; 5F3H I; 4YCI C; 1TFG A; 1KLA A; 1WWW V; 1ES7 A; 4UI0 A; 1BTG A; 1XWD A; 2PJY A; 5JZ7 A; 2VXS A; 2TGI A; 4N1D A; 1TZI V; 1B8K A; 1TGK A; 1FZV A; 2XV7 A; 4WPB A; 2XAC A; 1ZKZ A; 5HK5 E; 2C7W A; 1RV6 V; 4MQW A; 1B8M B; 1DZ7 A; 1BJ1 V; 1FLT V; 4EAX A; 5BQ8 D; 4AY9 B; 1HCN A; 2FJG V; 2GNN A; 5BQE A; 1FL7 A; 1QFW A; 3SEK B; 2QCQ A; 1KLC A; 4KZN A; 1NT3 A; 4EDW V; 1SGF B; 5BQC A; 4UHZ A; 1TGJ A; 5HHX A; 4ZFF C; 3IJ2 A; 3KFD A; 2QJB A; 1LXI A; 4HR9 A; 1XWD B; 1HRP A; #chains in the Genus database with same CATH homology 4UI1 A; 1BND B; 4BV4 L; 1BND A; 4UHY A; 5HI4 A; 2X1X E; 3BDY V; 2FJH V; 1KTZ A; 3RJR A; 4MID A; 4HQX A; 3BK3 A; 2V5E B; 4EC7 A; 2ARP A; 1HD4 A; 5HI5 A; 4MPL A; 1NYS B; 4MQW B; 1E9J A; 1S4Y B; 2QR0 C; 5HHV A; 2GYZ A; 1HCN B; 3V6B A; 2GOO A; 1WQ8 A; 2ARV A; 5BQE B; 1BMP A; 1CZ8 V; 1FL7 B; 2VWE A; 1QFW B; 2QJ9 A; 1M4U A; 3BMP A; 5HHC A; 4ZBN A; 5FV2 V; 1HRP B; 2R53 A; 5FV1 V; 3S1K V; 1KAT W; 1JPY A; 1LX5 A; 1WQ9 A; 1BET A; 1TZH V; 2R52 A; 3B4V A; 1SG1 A; 4LXS J; 4X1J A; 4FAO A; 1PDG A; 4EDX V; 4GLS E; 4KV5 A; 4QCI C; 1REU A; 1AGQ A; 4YCG C; 3HH2 A; 3S1B V; 3BUK A; 3MJK A; 3P9W A; 5HHD A; 5HK5 A; 1MKG A; 4XPJ A; 4LXR J; 1B98 A; 2QCW A; 4HSA A; 4UI2 B; 3MJG A; 3QB4 A; 5BQ8 B; 5BQ8 A; 2QJA A; 4KXZ A; 3EO1 C; 3EVS B; 2BHK A; 1WAQ A; 2ASK A; 1AOC A; 2B0U A; 4QAF C; 5E4G A; 2X1W A; 1REW A; 4GLN E; 1QTY R; 2IFG E; 5F3B C; 1WQ9 B; 5HI3 A; 2P6A A; 5BQB A; 4QHU C; 1VPF A; 5BPU A; 5AEJ A; 1B8M A; 1M4U L; 1MJV A; 1MKK A; 2GYR A; 2KD3 A; 3FUB B; 4AY9 A; 4EFV A; 3QTK A; 1NYU B; 2H64 A; 1VPP V; 2GH0 C; 4HQU A; 2VPF A; 3V2A A; 2H62 A; 3JVF A; 1HCF A; 3E07 A; 5F3H I; 4YCI C; 1TFG A; 1KLA A; 1WWW V; 1ES7 A; 4UI0 A; 1BTG A; 1XWD A; 2PJY A; 5JZ7 A; 2VXS A; 2TGI A; 4N1D A; 1TZI V; 1B8K A; 1TGK A; 1FZV A; 2XV7 A; 4WPB A; 2XAC A; 1ZKZ A; 5HK5 E; 2C7W A; 1RV6 V; 4MQW A; 1B8M B; 1DZ7 A; 1BJ1 V; 1FLT V; 4EAX A; 5BQ8 D; 4AY9 B; 1HCN A; 2FJG V; 2GNN A; 5BQE A; 1FL7 A; 1QFW A; 3SEK B; 2QCQ A; 1KLC A; 4KZN A; 1NT3 A; 4EDW V; 1SGF B; 5BQC A; 4UHZ A; 1TGJ A; 5HHX A; 4ZFF C; 3IJ2 A; 3KFD A; 2QJB A; 1LXI A; 4HR9 A; 1XWD B; 1HRP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
