1DZ7A

Solution structure of the a-subunit of human chorionic gonadotropin [modeled without carbohydrate residues]
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
92
structure length
92
Chain Sequence
APDVQDCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (15-18)TIV2 (16-19)EMPTYS1 (59-60)TIV8 (87-90)S4 (84-85)S2 (64-64)TIV7 (79-82)S3 (81-81)TIV6 (76-79)TIV3 (20-23)TI'1 (71-74)TIV5 (70-73)Updating...
connected with : NaN
publication title Solution structure of the alpha-subunit of human chorionic gonadotropin.
pubmed rcsb
molecule keywords CHORIONIC GONADOTROPIN
molecule tags Glycoprotein
total genus 2
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2000-02-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1dz7A00
2H62A 2X1WA 5JZ7A 3QB4A 4BV4L 2FJGV 4UI0A 4HR9A 5E4GA 1KLAA 5BQCA 2VXSA 1E9JA 4EFVA 2GYRA 4QHUC 4HSAA 5F3BC 5AEJA 1M4UL 1WQ9B 4LXRJ 4N1DA 1B8KA 3MJGA 4EAXA 1MKGA 1ES7A 1REWA 2KD3A 1NYSB 3EO1C 4GLNE 5BQBA 5FV2V 4YCGC 1QFWA 4LXSJ 5BQ8A 3EVSB 4GLSE 4QAFC 1VPPV 1KLCA 4UI1A 2ARVA 1CZ8V 1BMPA 2BHKA 5HHXA 3RJRA 4MIDA 4MQWB 5HI4A 4EDWV 4KV5A 5BQEB 4EC7A 1PDGA 5HI3A 1BTGA 5HHCA 3P9WA 2B0UA 1LXIA 3FUBB 3SEKB 2GH0C 1BJ1V 3BDYV 1WQ9A 2PJYA 1ZKZA 4KZNA 2GOOA 5BQ8D 1HCNB 5HHDA 2TGIA 2QR0C 3B4VA 1XWDB 1S4YB 2QCQA 3KFDA 5HK5A 2ARPA 4UHZA 1XWDA 4ZFFC 1WWWV 1B8MB 1AGQA 1REUA 4AY9B 1AOCA 4MPLA 1MJVA 1TZIV 4MQWA 1HCFA 5BQEA 1FL7B 4ZBNA 1RV6V 3BK3A 2VPFA 3HH2A 1QTYR 1LX5A 1WQ8A 1NYUB 1NT3A 1TGJA 1BNDB 4UHYA 3BMPA 3E07A 2C7WA 1FLTV 2H64A 2VWEA 1KATW 4X1JA 1BETA 5FV1V 3QTKA 1HRPB 3S1KV 4UI2B 1HCNA 4XPJA 1HRPA 2QJBA 1TGKA 2QJ9A 3BUKA 4YCIC 5HHVA 1TZHV 5HK5E 2QJAA 2P6AA 1JPYA 2R52A 1KTZA 1FZVA 1B98A 4FAOA 3JVFA 4HQUA 1B8MA 2V5EB 1M4UA 2IFGE 1VPFA 2GYZA 2X1XE 4AY9A 4WPBA 5BPUA 4EDXV 2GNNA 1DZ7A 1FL7A 1TFGA 2XACA 2ASKA 4KXZA 3S1BV 2QCWA 1QFWB 1HD4A 4HQXA 1MKKA 1SGFB 5BQ8B 2XV7A 5F3HI 5HI5A 3IJ2A 1BNDA 3V2AA 3V6BA 1WAQA 2R53A 2FJHV 4QCIC 3MJKA 1SG1A
chains in the Genus database with same CATH superfamily
2H62A 2X1WA 5JZ7A 3QB4A 4BV4L 2FJGV 4UI0A 4HR9A 5E4GA 1KLAA 5BQCA 2VXSA 1E9JA 4EFVA 2GYRA 4QHUC 4HSAA 5F3BC 5AEJA 1M4UL 1WQ9B 4LXRJ 4N1DA 1B8KA 3MJGA 4EAXA 1MKGA 1ES7A 1REWA 2KD3A 1NYSB 3EO1C 4GLNE 5BQBA 5FV2V 4YCGC 1QFWA 4LXSJ 5BQ8A 3EVSB 4GLSE 4QAFC 1VPPV 1KLCA 4UI1A 2ARVA 1CZ8V 1BMPA 2BHKA 5HHXA 3RJRA 4MIDA 4MQWB 5HI4A 4EDWV 4KV5A 5BQEB 4EC7A 1PDGA 5HI3A 1BTGA 5HHCA 3P9WA 2B0UA 1LXIA 3FUBB 3SEKB 2GH0C 1BJ1V 3BDYV 1WQ9A 2PJYA 1ZKZA 4KZNA 2GOOA 5BQ8D 1HCNB 5HHDA 2TGIA 2QR0C 3B4VA 1XWDB 1S4YB 2QCQA 3KFDA 5HK5A 2ARPA 4UHZA 1XWDA 4ZFFC 1WWWV 1B8MB 1AGQA 1REUA 4AY9B 1AOCA 4MPLA 1MJVA 1TZIV 4MQWA 1HCFA 5BQEA 1FL7B 4ZBNA 1RV6V 3BK3A 2VPFA 3HH2A 1QTYR 1LX5A 1WQ8A 1NYUB 1NT3A 1TGJA 1BNDB 4UHYA 3BMPA 3E07A 2C7WA 1FLTV 2H64A 2VWEA 1KATW 4X1JA 1BETA 5FV1V 3QTKA 1HRPB 3S1KV 4UI2B 1HCNA 4XPJA 1HRPA 2QJBA 1TGKA 2QJ9A 3BUKA 4YCIC 5HHVA 1TZHV 5HK5E 2QJAA 2P6AA 1JPYA 2R52A 1KTZA 1FZVA 1B98A 4FAOA 3JVFA 4HQUA 1B8MA 2V5EB 1M4UA 2IFGE 1VPFA 2GYZA 2X1XE 4AY9A 4WPBA 5BPUA 4EDXV 2GNNA 1DZ7A 1FL7A 1TFGA 2XACA 2ASKA 4KXZA 3S1BV 2QCWA 1QFWB 1HD4A 4HQXA 1MKKA 1SGFB 5BQ8B 2XV7A 5F3HI 5HI5A 3IJ2A 1BNDA 3V2AA 3V6BA 1WAQA 2R53A 2FJHV 4QCIC 3MJKA 1SG1A
chains in the Genus database with same CATH topology
2H62A 2X1WA 5JZ7A 3QB4A 4BV4L 2FJGV 4UI0A 4HR9A 5E4GA 1KLAA 5BQCA 2VXSA 1E9JA 4EFVA 2GYRA 4QHUC 4HSAA 5F3BC 5AEJA 1M4UL 1WQ9B 4LXRJ 4N1DA 1B8KA 3MJGA 4EAXA 1MKGA 1ES7A 1REWA 2KD3A 1NYSB 3EO1C 4GLNE 5BQBA 5FV2V 4YCGC 1QFWA 4LXSJ 5BQ8A 3EVSB 4GLSE 4QAFC 1VPPV 1KLCA 4UI1A 2ARVA 1CZ8V 1BMPA 2BHKA 5HHXA 3RJRA 4MIDA 4MQWB 5HI4A 4EDWV 4KV5A 5BQEB 4EC7A 1PDGA 5HI3A 1BTGA 5HHCA 3P9WA 2B0UA 1LXIA 3FUBB 3SEKB 2GH0C 1BJ1V 3BDYV 1WQ9A 2PJYA 1ZKZA 4KZNA 2GOOA 5BQ8D 1HCNB 5HHDA 2TGIA 2QR0C 3B4VA 1XWDB 1S4YB 2QCQA 3KFDA 5HK5A 2ARPA 4UHZA 1XWDA 4ZFFC 1WWWV 1B8MB 1AGQA 1REUA 4AY9B 1AOCA 4MPLA 1MJVA 1TZIV 4MQWA 1HCFA 5BQEA 1FL7B 4ZBNA 1RV6V 3BK3A 2VPFA 3HH2A 1QTYR 1LX5A 1WQ8A 1NYUB 1NT3A 1TGJA 1BNDB 4UHYA 3BMPA 3E07A 2C7WA 1FLTV 2H64A 2VWEA 1KATW 4X1JA 1BETA 5FV1V 3QTKA 1HRPB 3S1KV 4UI2B 1HCNA 4XPJA 1HRPA 2QJBA 1TGKA 2QJ9A 3BUKA 4YCIC 5HHVA 1TZHV 5HK5E 2QJAA 2P6AA 1JPYA 2R52A 1KTZA 1FZVA 1B98A 4FAOA 3JVFA 4HQUA 1B8MA 2V5EB 1M4UA 2IFGE 1VPFA 2GYZA 2X1XE 4AY9A 4WPBA 5BPUA 4EDXV 2GNNA 1DZ7A 1FL7A 1TFGA 2XACA 2ASKA 4KXZA 3S1BV 2QCWA 1QFWB 1HD4A 4HQXA 1MKKA 1SGFB 5BQ8B 2XV7A 5F3HI 5HI5A 3IJ2A 1BNDA 3V2AA 3V6BA 1WAQA 2R53A 2FJHV 4QCIC 3MJKA 1SG1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H62 A;  2X1W A;  5JZ7 A;  3QB4 A;  4BV4 L;  2FJG V;  4UI0 A;  4HR9 A;  5E4G A;  1KLA A;  5BQC A;  2VXS A;  1E9J A;  4EFV A;  2GYR A;  4QHU C;  4HSA A;  5F3B C;  5AEJ A;  1M4U L;  1WQ9 B;  4LXR J;  4N1D A;  1B8K A;  3MJG A;  4EAX A;  1MKG A;  1ES7 A;  1REW A;  2KD3 A;  1NYS B;  3EO1 C;  4GLN E;  5BQB A;  5FV2 V;  4YCG C;  1QFW A;  4LXS J;  5BQ8 A;  3EVS B;  4GLS E;  4QAF C;  1VPP V;  1KLC A;  4UI1 A;  2ARV A;  1CZ8 V;  1BMP A;  2BHK A;  5HHX A;  3RJR A;  4MID A;  4MQW B;  5HI4 A;  4EDW V;  4KV5 A;  5BQE B;  4EC7 A;  1PDG A;  5HI3 A;  1BTG A;  5HHC A;  3P9W A;  2B0U A;  1LXI A;  3FUB B;  3SEK B;  2GH0 C;  1BJ1 V;  3BDY V;  1WQ9 A;  2PJY A;  1ZKZ A;  4KZN A;  2GOO A;  5BQ8 D;  1HCN B;  5HHD A;  2TGI A;  2QR0 C;  3B4V A;  1XWD B;  1S4Y B;  2QCQ A;  3KFD A;  5HK5 A;  2ARP A;  4UHZ A;  1XWD A;  4ZFF C;  1WWW V;  1B8M B;  1AGQ A;  1REU A;  4AY9 B;  1AOC A;  4MPL A;  1MJV A;  1TZI V;  4MQW A;  1HCF A;  5BQE A;  1FL7 B;  4ZBN A;  1RV6 V;  3BK3 A;  2VPF A;  3HH2 A;  1QTY R;  1LX5 A;  1WQ8 A;  1NYU B;  1NT3 A;  1TGJ A;  1BND B;  4UHY A;  3BMP A;  3E07 A;  2C7W A;  1FLT V;  2H64 A;  2VWE A;  1KAT W;  4X1J A;  1BET A;  5FV1 V;  3QTK A;  1HRP B;  3S1K V;  4UI2 B;  1HCN A;  4XPJ A;  1HRP A;  2QJB A;  1TGK A;  2QJ9 A;  3BUK A;  4YCI C;  5HHV A;  1TZH V;  5HK5 E;  2QJA A;  2P6A A;  1JPY A;  2R52 A;  1KTZ A;  1FZV A;  1B98 A;  4FAO A;  3JVF A;  4HQU A;  1B8M A;  2V5E B;  1M4U A;  2IFG E;  1VPF A;  2GYZ A;  2X1X E;  4AY9 A;  4WPB A;  5BPU A;  4EDX V;  2GNN A;  1DZ7 A;  1FL7 A;  1TFG A;  2XAC A;  2ASK A;  4KXZ A;  3S1B V;  2QCW A;  1QFW B;  1HD4 A;  4HQX A;  1MKK A;  1SGF B;  5BQ8 B;  2XV7 A;  5F3H I;  5HI5 A;  3IJ2 A;  1BND A;  3V2A A;  3V6B A;  1WAQ A;  2R53 A;  2FJH V;  4QCI C;  3MJK A;  1SG1 A; 
#chains in the Genus database with same CATH topology
 2H62 A;  2X1W A;  5JZ7 A;  3QB4 A;  4BV4 L;  2FJG V;  4UI0 A;  4HR9 A;  5E4G A;  1KLA A;  5BQC A;  2VXS A;  1E9J A;  4EFV A;  2GYR A;  4QHU C;  4HSA A;  5F3B C;  5AEJ A;  1M4U L;  1WQ9 B;  4LXR J;  4N1D A;  1B8K A;  3MJG A;  4EAX A;  1MKG A;  1ES7 A;  1REW A;  2KD3 A;  1NYS B;  3EO1 C;  4GLN E;  5BQB A;  5FV2 V;  4YCG C;  1QFW A;  4LXS J;  5BQ8 A;  3EVS B;  4GLS E;  4QAF C;  1VPP V;  1KLC A;  4UI1 A;  2ARV A;  1CZ8 V;  1BMP A;  2BHK A;  5HHX A;  3RJR A;  4MID A;  4MQW B;  5HI4 A;  4EDW V;  4KV5 A;  5BQE B;  4EC7 A;  1PDG A;  5HI3 A;  1BTG A;  5HHC A;  3P9W A;  2B0U A;  1LXI A;  3FUB B;  3SEK B;  2GH0 C;  1BJ1 V;  3BDY V;  1WQ9 A;  2PJY A;  1ZKZ A;  4KZN A;  2GOO A;  5BQ8 D;  1HCN B;  5HHD A;  2TGI A;  2QR0 C;  3B4V A;  1XWD B;  1S4Y B;  2QCQ A;  3KFD A;  5HK5 A;  2ARP A;  4UHZ A;  1XWD A;  4ZFF C;  1WWW V;  1B8M B;  1AGQ A;  1REU A;  4AY9 B;  1AOC A;  4MPL A;  1MJV A;  1TZI V;  4MQW A;  1HCF A;  5BQE A;  1FL7 B;  4ZBN A;  1RV6 V;  3BK3 A;  2VPF A;  3HH2 A;  1QTY R;  1LX5 A;  1WQ8 A;  1NYU B;  1NT3 A;  1TGJ A;  1BND B;  4UHY A;  3BMP A;  3E07 A;  2C7W A;  1FLT V;  2H64 A;  2VWE A;  1KAT W;  4X1J A;  1BET A;  5FV1 V;  3QTK A;  1HRP B;  3S1K V;  4UI2 B;  1HCN A;  4XPJ A;  1HRP A;  2QJB A;  1TGK A;  2QJ9 A;  3BUK A;  4YCI C;  5HHV A;  1TZH V;  5HK5 E;  2QJA A;  2P6A A;  1JPY A;  2R52 A;  1KTZ A;  1FZV A;  1B98 A;  4FAO A;  3JVF A;  4HQU A;  1B8M A;  2V5E B;  1M4U A;  2IFG E;  1VPF A;  2GYZ A;  2X1X E;  4AY9 A;  4WPB A;  5BPU A;  4EDX V;  2GNN A;  1DZ7 A;  1FL7 A;  1TFG A;  2XAC A;  2ASK A;  4KXZ A;  3S1B V;  2QCW A;  1QFW B;  1HD4 A;  4HQX A;  1MKK A;  1SGF B;  5BQ8 B;  2XV7 A;  5F3H I;  5HI5 A;  3IJ2 A;  1BND A;  3V2A A;  3V6B A;  1WAQ A;  2R53 A;  2FJH V;  4QCI C;  3MJK A;  1SG1 A; 
#chains in the Genus database with same CATH homology
 2H62 A;  2X1W A;  5JZ7 A;  3QB4 A;  4BV4 L;  2FJG V;  4UI0 A;  4HR9 A;  5E4G A;  1KLA A;  5BQC A;  2VXS A;  1E9J A;  4EFV A;  2GYR A;  4QHU C;  4HSA A;  5F3B C;  5AEJ A;  1M4U L;  1WQ9 B;  4LXR J;  4N1D A;  1B8K A;  3MJG A;  4EAX A;  1MKG A;  1ES7 A;  1REW A;  2KD3 A;  1NYS B;  3EO1 C;  4GLN E;  5BQB A;  5FV2 V;  4YCG C;  1QFW A;  4LXS J;  5BQ8 A;  3EVS B;  4GLS E;  4QAF C;  1VPP V;  1KLC A;  4UI1 A;  2ARV A;  1CZ8 V;  1BMP A;  2BHK A;  5HHX A;  3RJR A;  4MID A;  4MQW B;  5HI4 A;  4EDW V;  4KV5 A;  5BQE B;  4EC7 A;  1PDG A;  5HI3 A;  1BTG A;  5HHC A;  3P9W A;  2B0U A;  1LXI A;  3FUB B;  3SEK B;  2GH0 C;  1BJ1 V;  3BDY V;  1WQ9 A;  2PJY A;  1ZKZ A;  4KZN A;  2GOO A;  5BQ8 D;  1HCN B;  5HHD A;  2TGI A;  2QR0 C;  3B4V A;  1XWD B;  1S4Y B;  2QCQ A;  3KFD A;  5HK5 A;  2ARP A;  4UHZ A;  1XWD A;  4ZFF C;  1WWW V;  1B8M B;  1AGQ A;  1REU A;  4AY9 B;  1AOC A;  4MPL A;  1MJV A;  1TZI V;  4MQW A;  1HCF A;  5BQE A;  1FL7 B;  4ZBN A;  1RV6 V;  3BK3 A;  2VPF A;  3HH2 A;  1QTY R;  1LX5 A;  1WQ8 A;  1NYU B;  1NT3 A;  1TGJ A;  1BND B;  4UHY A;  3BMP A;  3E07 A;  2C7W A;  1FLT V;  2H64 A;  2VWE A;  1KAT W;  4X1J A;  1BET A;  5FV1 V;  3QTK A;  1HRP B;  3S1K V;  4UI2 B;  1HCN A;  4XPJ A;  1HRP A;  2QJB A;  1TGK A;  2QJ9 A;  3BUK A;  4YCI C;  5HHV A;  1TZH V;  5HK5 E;  2QJA A;  2P6A A;  1JPY A;  2R52 A;  1KTZ A;  1FZV A;  1B98 A;  4FAO A;  3JVF A;  4HQU A;  1B8M A;  2V5E B;  1M4U A;  2IFG E;  1VPF A;  2GYZ A;  2X1X E;  4AY9 A;  4WPB A;  5BPU A;  4EDX V;  2GNN A;  1DZ7 A;  1FL7 A;  1TFG A;  2XAC A;  2ASK A;  4KXZ A;  3S1B V;  2QCW A;  1QFW B;  1HD4 A;  4HQX A;  1MKK A;  1SGF B;  5BQ8 B;  2XV7 A;  5F3H I;  5HI5 A;  3IJ2 A;  1BND A;  3V2A A;  3V6B A;  1WAQ A;  2R53 A;  2FJH V;  4QCI C;  3MJK A;  1SG1 A; 
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