1LX5A

Crystal structure of the bmp7/actrii extracellular domain complex
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
104
structure length
104
Chain Sequence
QACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (38-104)O5 (11-41)TI3 (95-98)S1 (39-41)TI1 (52-55)TIV1 (59-62)S3 (56-58)S5 (66-68)S6 (104-117)TIV2 (72-75)TIV5 (96-99)AH1 (83-94)TIV4 (77-80)S2 (44-46)3H1 (48-50)S4 (61-63)TIV3 (76-79)Updating...
connected with : NaN
publication title The BMP7/ActRII Extracellular Domain Complex Provides New Insights into the Cooperative Nature of Receptor Assembly
pubmed doi rcsb
molecule keywords bone morphogenetic protein 7
molecule tags Growth factor/growth factor receptor
source organism Homo sapiens
total genus 15
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2002-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1lx5A00
1B98A 1NYSB 2ASKA 2H64A 2QR0C 2VWEA 5FV1V 5HK5E 5BQBA 4QAFC 4EAXA 1SG1A 2QJAA 1ZKZA 1M4UA 1VPPV 1TZHV 5HHCA 1WQ8A 2H62A 5FV2V 2QJ9A 5BQ8B 1AOCA 1REWA 1B8MB 4FAOA 5E4GA 1SGFB 4YCGC 1WQ9B 3IJ2A 1ES7A 2GYRA 4N1DA 1WAQA 3S1KV 2TGIA 4QCIC 5HK5A 4UI2B 1BTGA 1KATW 1TGJA 5BPUA 5HHXA 2X1WA 2P6AA 4GLNE 3P9WA 4UHYA 1KLCA 1NT3A 1QTYR 1TFGA 4KV5A 1QFWB 2QCQA 5BQ8A 4AY9B 4KZNA 1B8MA 2BHKA 2V5EB 2VPFA 3QB4A 2GH0C 2PJYA 4KXZA 1JPYA 4EC7A 1MKGA 2C7WA 2GOOA 3BUKA 3KFDA 4MQWB 3S1BV 2VXSA 1KTZA 1LXIA 4HSAA 1B8KA 4ZFFC 5F3HI 1E9JA 2ARPA 1FLTV 2XACA 1HRPB 2XV7A 5HI4A 1REUA 4LXRJ 1QFWA 1MKKA 5BQEB 1RV6V 1WWWV 1BNDB 1XWDB 3RJRA 4BV4L 5BQCA 4MQWA 3HH2A 1S4YB 3SEKB 4QHUC 1HD4A 1TZIV 3V6BA 1HRPA 1WQ9A 4YCIC 4HQUA 1HCFA 4EDXV 1DZ7A 1HCNB 2ARVA 4WPBA 2FJHV 1TGKA 3JVFA 3MJGA 3E07A 2X1XE 3EO1C 1KLAA 4UHZA 4MPLA 2KD3A 3B4VA 4LXSJ 3BMPA 3V2AA 4HR9A 2QCWA 2R52A 1M4UL 2GNNA 4XPJA 1BJ1V 4AY9A 1BMPA 2GYZA 2R53A 4HQXA 1NYUB 5HI3A 1HCNA 1FL7B 1AGQA 4ZBNA 2B0UA 4GLSE 3EVSB 4UI1A 2QJBA 1BETA 1PDGA 3BDYV 3BK3A 1VPFA 1LX5A 2FJGV 3QTKA 4EDWV 5JZ7A 5BQEA 4EFVA 1BNDA 5HHVA 5F3BC 5AEJA 1FL7A 1XWDA 1FZVA 2IFGE 3FUBB 4UI0A 5BQ8D 1CZ8V 4MIDA 5HI5A 5HHDA 3MJKA 1MJVA 4X1JA
chains in the Genus database with same CATH superfamily
1B98A 1NYSB 2ASKA 2H64A 2QR0C 2VWEA 5FV1V 5HK5E 5BQBA 4QAFC 4EAXA 1SG1A 2QJAA 1ZKZA 1M4UA 1VPPV 1TZHV 5HHCA 1WQ8A 2H62A 5FV2V 2QJ9A 5BQ8B 1AOCA 1REWA 1B8MB 4FAOA 5E4GA 1SGFB 4YCGC 1WQ9B 3IJ2A 1ES7A 2GYRA 4N1DA 1WAQA 3S1KV 2TGIA 4QCIC 5HK5A 4UI2B 1BTGA 1KATW 1TGJA 5BPUA 5HHXA 2X1WA 2P6AA 4GLNE 3P9WA 4UHYA 1KLCA 1NT3A 1QTYR 1TFGA 4KV5A 1QFWB 2QCQA 5BQ8A 4AY9B 4KZNA 1B8MA 2BHKA 2V5EB 2VPFA 3QB4A 2GH0C 2PJYA 4KXZA 1JPYA 4EC7A 1MKGA 2C7WA 2GOOA 3BUKA 3KFDA 4MQWB 3S1BV 2VXSA 1KTZA 1LXIA 4HSAA 1B8KA 4ZFFC 5F3HI 1E9JA 2ARPA 1FLTV 2XACA 1HRPB 2XV7A 5HI4A 1REUA 4LXRJ 1QFWA 1MKKA 5BQEB 1RV6V 1WWWV 1BNDB 1XWDB 3RJRA 4BV4L 5BQCA 4MQWA 3HH2A 1S4YB 3SEKB 4QHUC 1HD4A 1TZIV 3V6BA 1HRPA 1WQ9A 4YCIC 4HQUA 1HCFA 4EDXV 1DZ7A 1HCNB 2ARVA 4WPBA 2FJHV 1TGKA 3JVFA 3MJGA 3E07A 2X1XE 3EO1C 1KLAA 4UHZA 4MPLA 2KD3A 3B4VA 4LXSJ 3BMPA 3V2AA 4HR9A 2QCWA 2R52A 1M4UL 2GNNA 4XPJA 1BJ1V 4AY9A 1BMPA 2GYZA 2R53A 4HQXA 1NYUB 5HI3A 1HCNA 1FL7B 1AGQA 4ZBNA 2B0UA 4GLSE 3EVSB 4UI1A 2QJBA 1BETA 1PDGA 3BDYV 3BK3A 1VPFA 1LX5A 2FJGV 3QTKA 4EDWV 5JZ7A 5BQEA 4EFVA 1BNDA 5HHVA 5F3BC 5AEJA 1FL7A 1XWDA 1FZVA 2IFGE 3FUBB 4UI0A 5BQ8D 1CZ8V 4MIDA 5HI5A 5HHDA 3MJKA 1MJVA 4X1JA
chains in the Genus database with same CATH topology
1B98A 1NYSB 2ASKA 2H64A 2QR0C 2VWEA 5FV1V 5HK5E 5BQBA 4QAFC 4EAXA 1SG1A 2QJAA 1ZKZA 1M4UA 1VPPV 1TZHV 5HHCA 1WQ8A 2H62A 5FV2V 2QJ9A 5BQ8B 1AOCA 1REWA 1B8MB 4FAOA 5E4GA 1SGFB 4YCGC 1WQ9B 3IJ2A 1ES7A 2GYRA 4N1DA 1WAQA 3S1KV 2TGIA 4QCIC 5HK5A 4UI2B 1BTGA 1KATW 1TGJA 5BPUA 5HHXA 2X1WA 2P6AA 4GLNE 3P9WA 4UHYA 1KLCA 1NT3A 1QTYR 1TFGA 4KV5A 1QFWB 2QCQA 5BQ8A 4AY9B 4KZNA 1B8MA 2BHKA 2V5EB 2VPFA 3QB4A 2GH0C 2PJYA 4KXZA 1JPYA 4EC7A 1MKGA 2C7WA 2GOOA 3BUKA 3KFDA 4MQWB 3S1BV 2VXSA 1KTZA 1LXIA 4HSAA 1B8KA 4ZFFC 5F3HI 1E9JA 2ARPA 1FLTV 2XACA 1HRPB 2XV7A 5HI4A 1REUA 4LXRJ 1QFWA 1MKKA 5BQEB 1RV6V 1WWWV 1BNDB 1XWDB 3RJRA 4BV4L 5BQCA 4MQWA 3HH2A 1S4YB 3SEKB 4QHUC 1HD4A 1TZIV 3V6BA 1HRPA 1WQ9A 4YCIC 4HQUA 1HCFA 4EDXV 1DZ7A 1HCNB 2ARVA 4WPBA 2FJHV 1TGKA 3JVFA 3MJGA 3E07A 2X1XE 3EO1C 1KLAA 4UHZA 4MPLA 2KD3A 3B4VA 4LXSJ 3BMPA 3V2AA 4HR9A 2QCWA 2R52A 1M4UL 2GNNA 4XPJA 1BJ1V 4AY9A 1BMPA 2GYZA 2R53A 4HQXA 1NYUB 5HI3A 1HCNA 1FL7B 1AGQA 4ZBNA 2B0UA 4GLSE 3EVSB 4UI1A 2QJBA 1BETA 1PDGA 3BDYV 3BK3A 1VPFA 1LX5A 2FJGV 3QTKA 4EDWV 5JZ7A 5BQEA 4EFVA 1BNDA 5HHVA 5F3BC 5AEJA 1FL7A 1XWDA 1FZVA 2IFGE 3FUBB 4UI0A 5BQ8D 1CZ8V 4MIDA 5HI5A 5HHDA 3MJKA 1MJVA 4X1JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B98 A;  1NYS B;  2ASK A;  2H64 A;  2QR0 C;  2VWE A;  5FV1 V;  5HK5 E;  5BQB A;  4QAF C;  4EAX A;  1SG1 A;  2QJA A;  1ZKZ A;  1M4U A;  1VPP V;  1TZH V;  5HHC A;  1WQ8 A;  2H62 A;  5FV2 V;  2QJ9 A;  5BQ8 B;  1AOC A;  1REW A;  1B8M B;  4FAO A;  5E4G A;  1SGF B;  4YCG C;  1WQ9 B;  3IJ2 A;  1ES7 A;  2GYR A;  4N1D A;  1WAQ A;  3S1K V;  2TGI A;  4QCI C;  5HK5 A;  4UI2 B;  1BTG A;  1KAT W;  1TGJ A;  5BPU A;  5HHX A;  2X1W A;  2P6A A;  4GLN E;  3P9W A;  4UHY A;  1KLC A;  1NT3 A;  1QTY R;  1TFG A;  4KV5 A;  1QFW B;  2QCQ A;  5BQ8 A;  4AY9 B;  4KZN A;  1B8M A;  2BHK A;  2V5E B;  2VPF A;  3QB4 A;  2GH0 C;  2PJY A;  4KXZ A;  1JPY A;  4EC7 A;  1MKG A;  2C7W A;  2GOO A;  3BUK A;  3KFD A;  4MQW B;  3S1B V;  2VXS A;  1KTZ A;  1LXI A;  4HSA A;  1B8K A;  4ZFF C;  5F3H I;  1E9J A;  2ARP A;  1FLT V;  2XAC A;  1HRP B;  2XV7 A;  5HI4 A;  1REU A;  4LXR J;  1QFW A;  1MKK A;  5BQE B;  1RV6 V;  1WWW V;  1BND B;  1XWD B;  3RJR A;  4BV4 L;  5BQC A;  4MQW A;  3HH2 A;  1S4Y B;  3SEK B;  4QHU C;  1HD4 A;  1TZI V;  3V6B A;  1HRP A;  1WQ9 A;  4YCI C;  4HQU A;  1HCF A;  4EDX V;  1DZ7 A;  1HCN B;  2ARV A;  4WPB A;  2FJH V;  1TGK A;  3JVF A;  3MJG A;  3E07 A;  2X1X E;  3EO1 C;  1KLA A;  4UHZ A;  4MPL A;  2KD3 A;  3B4V A;  4LXS J;  3BMP A;  3V2A A;  4HR9 A;  2QCW A;  2R52 A;  1M4U L;  2GNN A;  4XPJ A;  1BJ1 V;  4AY9 A;  1BMP A;  2GYZ A;  2R53 A;  4HQX A;  1NYU B;  5HI3 A;  1HCN A;  1FL7 B;  1AGQ A;  4ZBN A;  2B0U A;  4GLS E;  3EVS B;  4UI1 A;  2QJB A;  1BET A;  1PDG A;  3BDY V;  3BK3 A;  1VPF A;  1LX5 A;  2FJG V;  3QTK A;  4EDW V;  5JZ7 A;  5BQE A;  4EFV A;  1BND A;  5HHV A;  5F3B C;  5AEJ A;  1FL7 A;  1XWD A;  1FZV A;  2IFG E;  3FUB B;  4UI0 A;  5BQ8 D;  1CZ8 V;  4MID A;  5HI5 A;  5HHD A;  3MJK A;  1MJV A;  4X1J A; 
#chains in the Genus database with same CATH topology
 1B98 A;  1NYS B;  2ASK A;  2H64 A;  2QR0 C;  2VWE A;  5FV1 V;  5HK5 E;  5BQB A;  4QAF C;  4EAX A;  1SG1 A;  2QJA A;  1ZKZ A;  1M4U A;  1VPP V;  1TZH V;  5HHC A;  1WQ8 A;  2H62 A;  5FV2 V;  2QJ9 A;  5BQ8 B;  1AOC A;  1REW A;  1B8M B;  4FAO A;  5E4G A;  1SGF B;  4YCG C;  1WQ9 B;  3IJ2 A;  1ES7 A;  2GYR A;  4N1D A;  1WAQ A;  3S1K V;  2TGI A;  4QCI C;  5HK5 A;  4UI2 B;  1BTG A;  1KAT W;  1TGJ A;  5BPU A;  5HHX A;  2X1W A;  2P6A A;  4GLN E;  3P9W A;  4UHY A;  1KLC A;  1NT3 A;  1QTY R;  1TFG A;  4KV5 A;  1QFW B;  2QCQ A;  5BQ8 A;  4AY9 B;  4KZN A;  1B8M A;  2BHK A;  2V5E B;  2VPF A;  3QB4 A;  2GH0 C;  2PJY A;  4KXZ A;  1JPY A;  4EC7 A;  1MKG A;  2C7W A;  2GOO A;  3BUK A;  3KFD A;  4MQW B;  3S1B V;  2VXS A;  1KTZ A;  1LXI A;  4HSA A;  1B8K A;  4ZFF C;  5F3H I;  1E9J A;  2ARP A;  1FLT V;  2XAC A;  1HRP B;  2XV7 A;  5HI4 A;  1REU A;  4LXR J;  1QFW A;  1MKK A;  5BQE B;  1RV6 V;  1WWW V;  1BND B;  1XWD B;  3RJR A;  4BV4 L;  5BQC A;  4MQW A;  3HH2 A;  1S4Y B;  3SEK B;  4QHU C;  1HD4 A;  1TZI V;  3V6B A;  1HRP A;  1WQ9 A;  4YCI C;  4HQU A;  1HCF A;  4EDX V;  1DZ7 A;  1HCN B;  2ARV A;  4WPB A;  2FJH V;  1TGK A;  3JVF A;  3MJG A;  3E07 A;  2X1X E;  3EO1 C;  1KLA A;  4UHZ A;  4MPL A;  2KD3 A;  3B4V A;  4LXS J;  3BMP A;  3V2A A;  4HR9 A;  2QCW A;  2R52 A;  1M4U L;  2GNN A;  4XPJ A;  1BJ1 V;  4AY9 A;  1BMP A;  2GYZ A;  2R53 A;  4HQX A;  1NYU B;  5HI3 A;  1HCN A;  1FL7 B;  1AGQ A;  4ZBN A;  2B0U A;  4GLS E;  3EVS B;  4UI1 A;  2QJB A;  1BET A;  1PDG A;  3BDY V;  3BK3 A;  1VPF A;  1LX5 A;  2FJG V;  3QTK A;  4EDW V;  5JZ7 A;  5BQE A;  4EFV A;  1BND A;  5HHV A;  5F3B C;  5AEJ A;  1FL7 A;  1XWD A;  1FZV A;  2IFG E;  3FUB B;  4UI0 A;  5BQ8 D;  1CZ8 V;  4MID A;  5HI5 A;  5HHD A;  3MJK A;  1MJV A;  4X1J A; 
#chains in the Genus database with same CATH homology
 1B98 A;  1NYS B;  2ASK A;  2H64 A;  2QR0 C;  2VWE A;  5FV1 V;  5HK5 E;  5BQB A;  4QAF C;  4EAX A;  1SG1 A;  2QJA A;  1ZKZ A;  1M4U A;  1VPP V;  1TZH V;  5HHC A;  1WQ8 A;  2H62 A;  5FV2 V;  2QJ9 A;  5BQ8 B;  1AOC A;  1REW A;  1B8M B;  4FAO A;  5E4G A;  1SGF B;  4YCG C;  1WQ9 B;  3IJ2 A;  1ES7 A;  2GYR A;  4N1D A;  1WAQ A;  3S1K V;  2TGI A;  4QCI C;  5HK5 A;  4UI2 B;  1BTG A;  1KAT W;  1TGJ A;  5BPU A;  5HHX A;  2X1W A;  2P6A A;  4GLN E;  3P9W A;  4UHY A;  1KLC A;  1NT3 A;  1QTY R;  1TFG A;  4KV5 A;  1QFW B;  2QCQ A;  5BQ8 A;  4AY9 B;  4KZN A;  1B8M A;  2BHK A;  2V5E B;  2VPF A;  3QB4 A;  2GH0 C;  2PJY A;  4KXZ A;  1JPY A;  4EC7 A;  1MKG A;  2C7W A;  2GOO A;  3BUK A;  3KFD A;  4MQW B;  3S1B V;  2VXS A;  1KTZ A;  1LXI A;  4HSA A;  1B8K A;  4ZFF C;  5F3H I;  1E9J A;  2ARP A;  1FLT V;  2XAC A;  1HRP B;  2XV7 A;  5HI4 A;  1REU A;  4LXR J;  1QFW A;  1MKK A;  5BQE B;  1RV6 V;  1WWW V;  1BND B;  1XWD B;  3RJR A;  4BV4 L;  5BQC A;  4MQW A;  3HH2 A;  1S4Y B;  3SEK B;  4QHU C;  1HD4 A;  1TZI V;  3V6B A;  1HRP A;  1WQ9 A;  4YCI C;  4HQU A;  1HCF A;  4EDX V;  1DZ7 A;  1HCN B;  2ARV A;  4WPB A;  2FJH V;  1TGK A;  3JVF A;  3MJG A;  3E07 A;  2X1X E;  3EO1 C;  1KLA A;  4UHZ A;  4MPL A;  2KD3 A;  3B4V A;  4LXS J;  3BMP A;  3V2A A;  4HR9 A;  2QCW A;  2R52 A;  1M4U L;  2GNN A;  4XPJ A;  1BJ1 V;  4AY9 A;  1BMP A;  2GYZ A;  2R53 A;  4HQX A;  1NYU B;  5HI3 A;  1HCN A;  1FL7 B;  1AGQ A;  4ZBN A;  2B0U A;  4GLS E;  3EVS B;  4UI1 A;  2QJB A;  1BET A;  1PDG A;  3BDY V;  3BK3 A;  1VPF A;  1LX5 A;  2FJG V;  3QTK A;  4EDW V;  5JZ7 A;  5BQE A;  4EFV A;  1BND A;  5HHV A;  5F3B C;  5AEJ A;  1FL7 A;  1XWD A;  1FZV A;  2IFG E;  3FUB B;  4UI0 A;  5BQ8 D;  1CZ8 V;  4MID A;  5HI5 A;  5HHD A;  3MJK A;  1MJV A;  4X1J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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