1DZ7A

Solution structure of the a-subunit of human chorionic gonadotropin [modeled without carbohydrate residues]
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
92
structure length
92
Chain Sequence
APDVQDCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSYNRVTVMGGFKVENHTACHCSTCYYHKS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (15-18)TIV2 (16-19)EMPTYS1 (59-60)TIV8 (87-90)S4 (84-85)S2 (64-64)TIV7 (79-82)S3 (81-81)TIV6 (76-79)TIV3 (20-23)TI'1 (71-74)TIV5 (70-73)Updating...
connected with : NaN
molecule tags Glycoprotein
publication title Solution structure of the alpha-subunit of human chorionic gonadotropin.
pubmed rcsb
molecule keywords CHORIONIC GONADOTROPIN
total genus 2
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2000-02-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 1dz7A00
1XWDB 2P6AA 1BMPA 5HHCA 4UI2B 5HI5A 4XPJA 1RV6V 1TGKA 2BHKA 4EDWV 4KV5A 1MKKA 2H64A 1TFGA 2QJBA 3MJGA 2QCQA 1BETA 1CZ8V 1VPFA 4HR9A 1WWWV 1FL7B 2QJ9A 1HD4A 5FV1V 5E4GA 4HQXA 5BQEA 3V2AA 3QB4A 5BQ8A 1DZ7A 1TZHV 5F3BC 1SGFB 1QFWB 4MQWA 3HH2A 1TZIV 2QR0C 1BNDA 3BMPA 1NYUB 4UI0A 2C7WA 2R53A 3BK3A 2QCWA 4X1JA 5HK5E 2X1XE 4AY9A 1KLCA 1QTYR 2ARPA 2ARVA 5HHXA 1WQ9B 5BQ8D 1B8KA 1JPYA 2GYRA 2GOOA 5HI3A 3SEKB 1TGJA 2KD3A 4QHUC 1HCNA 1MKGA 3V6BA 2IFGE 1B8MA 3P9WA 1SG1A 1NYSB 3QTKA 1VPPV 5JZ7A 1HRPA 2VWEA 3KFDA 1WAQA 5BQEB 1LXIA 1NT3A 1WQ8A 5BQ8B 3RJRA 2H62A 1MJVA 5HI4A 4GLNE 1M4UA 3S1BV 2TGIA 4KZNA 4HQUA 1BNDB 1FLTV 2V5EB 1BTGA 3BUKA 1FL7A 2R52A 4FAOA 5HHVA 1HCFA 4WPBA 4EDXV 2ASKA 4EAXA 3B4VA 4UI1A 4AY9B 2QJAA 4ZFFC 4YCGC 3EVSB 2XACA 4UHZA 3IJ2A 1QFWA 4BV4L 2FJGV 5BQCA 5HHDA 2VPFA 2VXSA 5BPUA 2FJHV 2X1WA 1KLAA 4ZBNA 3BDYV 1REWA 1XWDA 4UHYA 5FV2V 4N1DA 1FZVA 2GYZA 3MJKA 5HK5A 4GLSE 1HRPB 4LXRJ 1LX5A 2B0UA 2GH0C 1ZKZA 4MQWB 3S1KV 2PJYA 4MPLA 1KTZA 4EC7A 4EFVA 1M4UL 3JVFA 1BJ1V 1S4YB 1AOCA 2XV7A 1E9JA 3E07A 3EO1C 5AEJA 1B98A 5F3HI 4MIDA 1REUA 4QCIC 2GNNA 4KXZA 1AGQA 1PDGA 4LXSJ 4YCIC 1ES7A 1HCNB 4HSAA 1B8MB 4QAFC 5BQBA 3FUBB 1KATW 1WQ9A
chains in the Genus database with same CATH superfamily
1XWDB 2P6AA 1BMPA 5HHCA 4UI2B 5HI5A 4XPJA 1RV6V 1TGKA 2BHKA 4EDWV 4KV5A 1MKKA 2H64A 1TFGA 2QJBA 3MJGA 2QCQA 1BETA 1CZ8V 1VPFA 4HR9A 1WWWV 1FL7B 2QJ9A 1HD4A 5FV1V 5E4GA 4HQXA 5BQEA 3V2AA 3QB4A 5BQ8A 1DZ7A 1TZHV 5F3BC 1SGFB 1QFWB 4MQWA 3HH2A 1TZIV 2QR0C 1BNDA 3BMPA 1NYUB 4UI0A 2C7WA 2R53A 3BK3A 2QCWA 4X1JA 5HK5E 2X1XE 4AY9A 1KLCA 1QTYR 2ARPA 2ARVA 5HHXA 1WQ9B 5BQ8D 1B8KA 1JPYA 2GYRA 2GOOA 5HI3A 3SEKB 1TGJA 2KD3A 4QHUC 1HCNA 1MKGA 3V6BA 2IFGE 1B8MA 3P9WA 1SG1A 1NYSB 3QTKA 1VPPV 5JZ7A 1HRPA 2VWEA 3KFDA 1WAQA 5BQEB 1LXIA 1NT3A 1WQ8A 5BQ8B 3RJRA 2H62A 1MJVA 5HI4A 4GLNE 1M4UA 3S1BV 2TGIA 4KZNA 4HQUA 1BNDB 1FLTV 2V5EB 1BTGA 3BUKA 1FL7A 2R52A 4FAOA 5HHVA 1HCFA 4WPBA 4EDXV 2ASKA 4EAXA 3B4VA 4UI1A 4AY9B 2QJAA 4ZFFC 4YCGC 3EVSB 2XACA 4UHZA 3IJ2A 1QFWA 4BV4L 2FJGV 5BQCA 5HHDA 2VPFA 2VXSA 5BPUA 2FJHV 2X1WA 1KLAA 4ZBNA 3BDYV 1REWA 1XWDA 4UHYA 5FV2V 4N1DA 1FZVA 2GYZA 3MJKA 5HK5A 4GLSE 1HRPB 4LXRJ 1LX5A 2B0UA 2GH0C 1ZKZA 4MQWB 3S1KV 2PJYA 4MPLA 1KTZA 4EC7A 4EFVA 1M4UL 3JVFA 1BJ1V 1S4YB 1AOCA 2XV7A 1E9JA 3E07A 3EO1C 5AEJA 1B98A 5F3HI 4MIDA 1REUA 4QCIC 2GNNA 4KXZA 1AGQA 1PDGA 4LXSJ 4YCIC 1ES7A 1HCNB 4HSAA 1B8MB 4QAFC 5BQBA 3FUBB 1KATW 1WQ9A
chains in the Genus database with same CATH topology
1XWDB 2P6AA 1BMPA 5HHCA 4UI2B 5HI5A 4XPJA 1RV6V 1TGKA 2BHKA 4EDWV 4KV5A 1MKKA 2H64A 1TFGA 2QJBA 3MJGA 2QCQA 1BETA 1CZ8V 1VPFA 4HR9A 1WWWV 1FL7B 2QJ9A 1HD4A 5FV1V 5E4GA 4HQXA 5BQEA 3V2AA 3QB4A 5BQ8A 1DZ7A 1TZHV 5F3BC 1SGFB 1QFWB 4MQWA 3HH2A 1TZIV 2QR0C 1BNDA 3BMPA 1NYUB 4UI0A 2C7WA 2R53A 3BK3A 2QCWA 4X1JA 5HK5E 2X1XE 4AY9A 1KLCA 1QTYR 2ARPA 2ARVA 5HHXA 1WQ9B 5BQ8D 1B8KA 1JPYA 2GYRA 2GOOA 5HI3A 3SEKB 1TGJA 2KD3A 4QHUC 1HCNA 1MKGA 3V6BA 2IFGE 1B8MA 3P9WA 1SG1A 1NYSB 3QTKA 1VPPV 5JZ7A 1HRPA 2VWEA 3KFDA 1WAQA 5BQEB 1LXIA 1NT3A 1WQ8A 5BQ8B 3RJRA 2H62A 1MJVA 5HI4A 4GLNE 1M4UA 3S1BV 2TGIA 4KZNA 4HQUA 1BNDB 1FLTV 2V5EB 1BTGA 3BUKA 1FL7A 2R52A 4FAOA 5HHVA 1HCFA 4WPBA 4EDXV 2ASKA 4EAXA 3B4VA 4UI1A 4AY9B 2QJAA 4ZFFC 4YCGC 3EVSB 2XACA 4UHZA 3IJ2A 1QFWA 4BV4L 2FJGV 5BQCA 5HHDA 2VPFA 2VXSA 5BPUA 2FJHV 2X1WA 1KLAA 4ZBNA 3BDYV 1REWA 1XWDA 4UHYA 5FV2V 4N1DA 1FZVA 2GYZA 3MJKA 5HK5A 4GLSE 1HRPB 4LXRJ 1LX5A 2B0UA 2GH0C 1ZKZA 4MQWB 3S1KV 2PJYA 4MPLA 1KTZA 4EC7A 4EFVA 1M4UL 3JVFA 1BJ1V 1S4YB 1AOCA 2XV7A 1E9JA 3E07A 3EO1C 5AEJA 1B98A 5F3HI 4MIDA 1REUA 4QCIC 2GNNA 4KXZA 1AGQA 1PDGA 4LXSJ 4YCIC 1ES7A 1HCNB 4HSAA 1B8MB 4QAFC 5BQBA 3FUBB 1KATW 1WQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XWD B;  2P6A A;  1BMP A;  5HHC A;  4UI2 B;  5HI5 A;  4XPJ A;  1RV6 V;  1TGK A;  2BHK A;  4EDW V;  4KV5 A;  1MKK A;  2H64 A;  1TFG A;  2QJB A;  3MJG A;  2QCQ A;  1BET A;  1CZ8 V;  1VPF A;  4HR9 A;  1WWW V;  1FL7 B;  2QJ9 A;  1HD4 A;  5FV1 V;  5E4G A;  4HQX A;  5BQE A;  3V2A A;  3QB4 A;  5BQ8 A;  1DZ7 A;  1TZH V;  5F3B C;  1SGF B;  1QFW B;  4MQW A;  3HH2 A;  1TZI V;  2QR0 C;  1BND A;  3BMP A;  1NYU B;  4UI0 A;  2C7W A;  2R53 A;  3BK3 A;  2QCW A;  4X1J A;  5HK5 E;  2X1X E;  4AY9 A;  1KLC A;  1QTY R;  2ARP A;  2ARV A;  5HHX A;  1WQ9 B;  5BQ8 D;  1B8K A;  1JPY A;  2GYR A;  2GOO A;  5HI3 A;  3SEK B;  1TGJ A;  2KD3 A;  4QHU C;  1HCN A;  1MKG A;  3V6B A;  2IFG E;  1B8M A;  3P9W A;  1SG1 A;  1NYS B;  3QTK A;  1VPP V;  5JZ7 A;  1HRP A;  2VWE A;  3KFD A;  1WAQ A;  5BQE B;  1LXI A;  1NT3 A;  1WQ8 A;  5BQ8 B;  3RJR A;  2H62 A;  1MJV A;  5HI4 A;  4GLN E;  1M4U A;  3S1B V;  2TGI A;  4KZN A;  4HQU A;  1BND B;  1FLT V;  2V5E B;  1BTG A;  3BUK A;  1FL7 A;  2R52 A;  4FAO A;  5HHV A;  1HCF A;  4WPB A;  4EDX V;  2ASK A;  4EAX A;  3B4V A;  4UI1 A;  4AY9 B;  2QJA A;  4ZFF C;  4YCG C;  3EVS B;  2XAC A;  4UHZ A;  3IJ2 A;  1QFW A;  4BV4 L;  2FJG V;  5BQC A;  5HHD A;  2VPF A;  2VXS A;  5BPU A;  2FJH V;  2X1W A;  1KLA A;  4ZBN A;  3BDY V;  1REW A;  1XWD A;  4UHY A;  5FV2 V;  4N1D A;  1FZV A;  2GYZ A;  3MJK A;  5HK5 A;  4GLS E;  1HRP B;  4LXR J;  1LX5 A;  2B0U A;  2GH0 C;  1ZKZ A;  4MQW B;  3S1K V;  2PJY A;  4MPL A;  1KTZ A;  4EC7 A;  4EFV A;  1M4U L;  3JVF A;  1BJ1 V;  1S4Y B;  1AOC A;  2XV7 A;  1E9J A;  3E07 A;  3EO1 C;  5AEJ A;  1B98 A;  5F3H I;  4MID A;  1REU A;  4QCI C;  2GNN A;  4KXZ A;  1AGQ A;  1PDG A;  4LXS J;  4YCI C;  1ES7 A;  1HCN B;  4HSA A;  1B8M B;  4QAF C;  5BQB A;  3FUB B;  1KAT W;  1WQ9 A; 
#chains in the Genus database with same CATH topology
 1XWD B;  2P6A A;  1BMP A;  5HHC A;  4UI2 B;  5HI5 A;  4XPJ A;  1RV6 V;  1TGK A;  2BHK A;  4EDW V;  4KV5 A;  1MKK A;  2H64 A;  1TFG A;  2QJB A;  3MJG A;  2QCQ A;  1BET A;  1CZ8 V;  1VPF A;  4HR9 A;  1WWW V;  1FL7 B;  2QJ9 A;  1HD4 A;  5FV1 V;  5E4G A;  4HQX A;  5BQE A;  3V2A A;  3QB4 A;  5BQ8 A;  1DZ7 A;  1TZH V;  5F3B C;  1SGF B;  1QFW B;  4MQW A;  3HH2 A;  1TZI V;  2QR0 C;  1BND A;  3BMP A;  1NYU B;  4UI0 A;  2C7W A;  2R53 A;  3BK3 A;  2QCW A;  4X1J A;  5HK5 E;  2X1X E;  4AY9 A;  1KLC A;  1QTY R;  2ARP A;  2ARV A;  5HHX A;  1WQ9 B;  5BQ8 D;  1B8K A;  1JPY A;  2GYR A;  2GOO A;  5HI3 A;  3SEK B;  1TGJ A;  2KD3 A;  4QHU C;  1HCN A;  1MKG A;  3V6B A;  2IFG E;  1B8M A;  3P9W A;  1SG1 A;  1NYS B;  3QTK A;  1VPP V;  5JZ7 A;  1HRP A;  2VWE A;  3KFD A;  1WAQ A;  5BQE B;  1LXI A;  1NT3 A;  1WQ8 A;  5BQ8 B;  3RJR A;  2H62 A;  1MJV A;  5HI4 A;  4GLN E;  1M4U A;  3S1B V;  2TGI A;  4KZN A;  4HQU A;  1BND B;  1FLT V;  2V5E B;  1BTG A;  3BUK A;  1FL7 A;  2R52 A;  4FAO A;  5HHV A;  1HCF A;  4WPB A;  4EDX V;  2ASK A;  4EAX A;  3B4V A;  4UI1 A;  4AY9 B;  2QJA A;  4ZFF C;  4YCG C;  3EVS B;  2XAC A;  4UHZ A;  3IJ2 A;  1QFW A;  4BV4 L;  2FJG V;  5BQC A;  5HHD A;  2VPF A;  2VXS A;  5BPU A;  2FJH V;  2X1W A;  1KLA A;  4ZBN A;  3BDY V;  1REW A;  1XWD A;  4UHY A;  5FV2 V;  4N1D A;  1FZV A;  2GYZ A;  3MJK A;  5HK5 A;  4GLS E;  1HRP B;  4LXR J;  1LX5 A;  2B0U A;  2GH0 C;  1ZKZ A;  4MQW B;  3S1K V;  2PJY A;  4MPL A;  1KTZ A;  4EC7 A;  4EFV A;  1M4U L;  3JVF A;  1BJ1 V;  1S4Y B;  1AOC A;  2XV7 A;  1E9J A;  3E07 A;  3EO1 C;  5AEJ A;  1B98 A;  5F3H I;  4MID A;  1REU A;  4QCI C;  2GNN A;  4KXZ A;  1AGQ A;  1PDG A;  4LXS J;  4YCI C;  1ES7 A;  1HCN B;  4HSA A;  1B8M B;  4QAF C;  5BQB A;  3FUB B;  1KAT W;  1WQ9 A; 
#chains in the Genus database with same CATH homology
 1XWD B;  2P6A A;  1BMP A;  5HHC A;  4UI2 B;  5HI5 A;  4XPJ A;  1RV6 V;  1TGK A;  2BHK A;  4EDW V;  4KV5 A;  1MKK A;  2H64 A;  1TFG A;  2QJB A;  3MJG A;  2QCQ A;  1BET A;  1CZ8 V;  1VPF A;  4HR9 A;  1WWW V;  1FL7 B;  2QJ9 A;  1HD4 A;  5FV1 V;  5E4G A;  4HQX A;  5BQE A;  3V2A A;  3QB4 A;  5BQ8 A;  1DZ7 A;  1TZH V;  5F3B C;  1SGF B;  1QFW B;  4MQW A;  3HH2 A;  1TZI V;  2QR0 C;  1BND A;  3BMP A;  1NYU B;  4UI0 A;  2C7W A;  2R53 A;  3BK3 A;  2QCW A;  4X1J A;  5HK5 E;  2X1X E;  4AY9 A;  1KLC A;  1QTY R;  2ARP A;  2ARV A;  5HHX A;  1WQ9 B;  5BQ8 D;  1B8K A;  1JPY A;  2GYR A;  2GOO A;  5HI3 A;  3SEK B;  1TGJ A;  2KD3 A;  4QHU C;  1HCN A;  1MKG A;  3V6B A;  2IFG E;  1B8M A;  3P9W A;  1SG1 A;  1NYS B;  3QTK A;  1VPP V;  5JZ7 A;  1HRP A;  2VWE A;  3KFD A;  1WAQ A;  5BQE B;  1LXI A;  1NT3 A;  1WQ8 A;  5BQ8 B;  3RJR A;  2H62 A;  1MJV A;  5HI4 A;  4GLN E;  1M4U A;  3S1B V;  2TGI A;  4KZN A;  4HQU A;  1BND B;  1FLT V;  2V5E B;  1BTG A;  3BUK A;  1FL7 A;  2R52 A;  4FAO A;  5HHV A;  1HCF A;  4WPB A;  4EDX V;  2ASK A;  4EAX A;  3B4V A;  4UI1 A;  4AY9 B;  2QJA A;  4ZFF C;  4YCG C;  3EVS B;  2XAC A;  4UHZ A;  3IJ2 A;  1QFW A;  4BV4 L;  2FJG V;  5BQC A;  5HHD A;  2VPF A;  2VXS A;  5BPU A;  2FJH V;  2X1W A;  1KLA A;  4ZBN A;  3BDY V;  1REW A;  1XWD A;  4UHY A;  5FV2 V;  4N1D A;  1FZV A;  2GYZ A;  3MJK A;  5HK5 A;  4GLS E;  1HRP B;  4LXR J;  1LX5 A;  2B0U A;  2GH0 C;  1ZKZ A;  4MQW B;  3S1K V;  2PJY A;  4MPL A;  1KTZ A;  4EC7 A;  4EFV A;  1M4U L;  3JVF A;  1BJ1 V;  1S4Y B;  1AOC A;  2XV7 A;  1E9J A;  3E07 A;  3EO1 C;  5AEJ A;  1B98 A;  5F3H I;  4MID A;  1REU A;  4QCI C;  2GNN A;  4KXZ A;  1AGQ A;  1PDG A;  4LXS J;  4YCI C;  1ES7 A;  1HCN B;  4HSA A;  1B8M B;  4QAF C;  5BQB A;  3FUB B;  1KAT W;  1WQ9 A; 
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