2ASKA

Structure of human artemin
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
101
structure length
101
Chain Sequence
ARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (97-112)S1 (17-24)3H2 (48-50)S2 (37-44)3H1 (25-27)AH1 (53-64)O1 (16-81)TI1 (93-96)S3 (80-93)Updating...
connected with : NaN
publication title Artemin crystal structure reveals insights into heparan sulfate binding.
pubmed doi rcsb
molecule keywords artemin
molecule tags Hormone/growth factor
source organism Homo sapiens
total genus 15
structure length 101
sequence length 101
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 2askA00
1HCFA 4EAXA 1MJVA 4UI0A 5BQEA 2XV7A 2R53A 1B8KA 3V2AA 5BQBA 1BETA 5HK5A 5FV2V 4MPLA 1XWDB 1WAQA 5HHXA 4ZFFC 1KATW 4MQWB 4HR9A 5FV1V 5HI3A 2B0UA 1BJ1V 3HH2A 1NT3A 4EDWV 3RJRA 1TGJA 1BNDB 4AY9B 1HD4A 1AOCA 1SG1A 2H64A 2H62A 2QR0C 1HRPB 3V6BA 4XPJA 2GH0C 1MKGA 1NYUB 2ASKA 2P6AA 1KTZA 2V5EB 1WQ9A 2VWEA 1TZHV 3BMPA 3JVFA 4BV4L 4GLSE 4N1DA 3S1KV 4MIDA 4GLNE 4UI2B 2GYZA 1WWWV 5F3HI 4KZNA 2VPFA 4QHUC 5HHDA 1KLCA 5BQ8B 1XWDA 4X1JA 3QB4A 1QFWB 1DZ7A 5BQ8D 1KLAA 4MQWA 1BTGA 2KD3A 1TZIV 3SEKB 3BDYV 5HI4A 1VPPV 1NYSB 2C7WA 3E07A 1B98A 2FJHV 2R52A 4KXZA 4EC7A 2X1XE 4YCIC 4YCGC 1BNDA 2FJGV 3B4VA 4AY9A 2QJAA 3MJKA 5F3BC 1FL7B 5HK5E 1HCNB 1HRPA 1B8MB 5HI5A 1VPFA 1BMPA 4LXRJ 1REUA 3QTKA 2BHKA 4QCIC 1LX5A 2X1WA 1FLTV 3KFDA 4LXSJ 5BQEB 1FZVA 3EO1C 4EDXV 2ARPA 4UHYA 4UI1A 1RV6V 1JPYA 4QAFC 1MKKA 3IJ2A 2VXSA 4UHZA 5BQ8A 4EFVA 4ZBNA 2QJ9A 2ARVA 1QFWA 1SGFB 5AEJA 5HHCA 5JZ7A 2GOOA 2XACA 1TFGA 3MJGA 1LXIA 1M4UL 3BK3A 3EVSB 1WQ8A 1ZKZA 2PJYA 2TGIA 5BPUA 2GNNA 1QTYR 1S4YB 4HSAA 3P9WA 4HQUA 3FUBB 5E4GA 1CZ8V 3S1BV 1FL7A 2GYRA 5HHVA 2QJBA 3BUKA 1TGKA 4WPBA 2IFGE 1HCNA 1B8MA 1AGQA 2QCWA 4HQXA 1M4UA 5BQCA 1ES7A 1REWA 4KV5A 1PDGA 2QCQA 1WQ9B 4FAOA 1E9JA
chains in the Genus database with same CATH superfamily
1HCFA 4EAXA 1MJVA 4UI0A 5BQEA 2XV7A 2R53A 1B8KA 3V2AA 5BQBA 1BETA 5HK5A 5FV2V 4MPLA 1XWDB 1WAQA 5HHXA 4ZFFC 1KATW 4MQWB 4HR9A 5FV1V 5HI3A 2B0UA 1BJ1V 3HH2A 1NT3A 4EDWV 3RJRA 1TGJA 1BNDB 4AY9B 1HD4A 1AOCA 1SG1A 2H64A 2H62A 2QR0C 1HRPB 3V6BA 4XPJA 2GH0C 1MKGA 1NYUB 2ASKA 2P6AA 1KTZA 2V5EB 1WQ9A 2VWEA 1TZHV 3BMPA 3JVFA 4BV4L 4GLSE 4N1DA 3S1KV 4MIDA 4GLNE 4UI2B 2GYZA 1WWWV 5F3HI 4KZNA 2VPFA 4QHUC 5HHDA 1KLCA 5BQ8B 1XWDA 4X1JA 3QB4A 1QFWB 1DZ7A 5BQ8D 1KLAA 4MQWA 1BTGA 2KD3A 1TZIV 3SEKB 3BDYV 5HI4A 1VPPV 1NYSB 2C7WA 3E07A 1B98A 2FJHV 2R52A 4KXZA 4EC7A 2X1XE 4YCIC 4YCGC 1BNDA 2FJGV 3B4VA 4AY9A 2QJAA 3MJKA 5F3BC 1FL7B 5HK5E 1HCNB 1HRPA 1B8MB 5HI5A 1VPFA 1BMPA 4LXRJ 1REUA 3QTKA 2BHKA 4QCIC 1LX5A 2X1WA 1FLTV 3KFDA 4LXSJ 5BQEB 1FZVA 3EO1C 4EDXV 2ARPA 4UHYA 4UI1A 1RV6V 1JPYA 4QAFC 1MKKA 3IJ2A 2VXSA 4UHZA 5BQ8A 4EFVA 4ZBNA 2QJ9A 2ARVA 1QFWA 1SGFB 5AEJA 5HHCA 5JZ7A 2GOOA 2XACA 1TFGA 3MJGA 1LXIA 1M4UL 3BK3A 3EVSB 1WQ8A 1ZKZA 2PJYA 2TGIA 5BPUA 2GNNA 1QTYR 1S4YB 4HSAA 3P9WA 4HQUA 3FUBB 5E4GA 1CZ8V 3S1BV 1FL7A 2GYRA 5HHVA 2QJBA 3BUKA 1TGKA 4WPBA 2IFGE 1HCNA 1B8MA 1AGQA 2QCWA 4HQXA 1M4UA 5BQCA 1ES7A 1REWA 4KV5A 1PDGA 2QCQA 1WQ9B 4FAOA 1E9JA
chains in the Genus database with same CATH topology
1HCFA 4EAXA 1MJVA 4UI0A 5BQEA 2XV7A 2R53A 1B8KA 3V2AA 5BQBA 1BETA 5HK5A 5FV2V 4MPLA 1XWDB 1WAQA 5HHXA 4ZFFC 1KATW 4MQWB 4HR9A 5FV1V 5HI3A 2B0UA 1BJ1V 3HH2A 1NT3A 4EDWV 3RJRA 1TGJA 1BNDB 4AY9B 1HD4A 1AOCA 1SG1A 2H64A 2H62A 2QR0C 1HRPB 3V6BA 4XPJA 2GH0C 1MKGA 1NYUB 2ASKA 2P6AA 1KTZA 2V5EB 1WQ9A 2VWEA 1TZHV 3BMPA 3JVFA 4BV4L 4GLSE 4N1DA 3S1KV 4MIDA 4GLNE 4UI2B 2GYZA 1WWWV 5F3HI 4KZNA 2VPFA 4QHUC 5HHDA 1KLCA 5BQ8B 1XWDA 4X1JA 3QB4A 1QFWB 1DZ7A 5BQ8D 1KLAA 4MQWA 1BTGA 2KD3A 1TZIV 3SEKB 3BDYV 5HI4A 1VPPV 1NYSB 2C7WA 3E07A 1B98A 2FJHV 2R52A 4KXZA 4EC7A 2X1XE 4YCIC 4YCGC 1BNDA 2FJGV 3B4VA 4AY9A 2QJAA 3MJKA 5F3BC 1FL7B 5HK5E 1HCNB 1HRPA 1B8MB 5HI5A 1VPFA 1BMPA 4LXRJ 1REUA 3QTKA 2BHKA 4QCIC 1LX5A 2X1WA 1FLTV 3KFDA 4LXSJ 5BQEB 1FZVA 3EO1C 4EDXV 2ARPA 4UHYA 4UI1A 1RV6V 1JPYA 4QAFC 1MKKA 3IJ2A 2VXSA 4UHZA 5BQ8A 4EFVA 4ZBNA 2QJ9A 2ARVA 1QFWA 1SGFB 5AEJA 5HHCA 5JZ7A 2GOOA 2XACA 1TFGA 3MJGA 1LXIA 1M4UL 3BK3A 3EVSB 1WQ8A 1ZKZA 2PJYA 2TGIA 5BPUA 2GNNA 1QTYR 1S4YB 4HSAA 3P9WA 4HQUA 3FUBB 5E4GA 1CZ8V 3S1BV 1FL7A 2GYRA 5HHVA 2QJBA 3BUKA 1TGKA 4WPBA 2IFGE 1HCNA 1B8MA 1AGQA 2QCWA 4HQXA 1M4UA 5BQCA 1ES7A 1REWA 4KV5A 1PDGA 2QCQA 1WQ9B 4FAOA 1E9JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HCF A;  4EAX A;  1MJV A;  4UI0 A;  5BQE A;  2XV7 A;  2R53 A;  1B8K A;  3V2A A;  5BQB A;  1BET A;  5HK5 A;  5FV2 V;  4MPL A;  1XWD B;  1WAQ A;  5HHX A;  4ZFF C;  1KAT W;  4MQW B;  4HR9 A;  5FV1 V;  5HI3 A;  2B0U A;  1BJ1 V;  3HH2 A;  1NT3 A;  4EDW V;  3RJR A;  1TGJ A;  1BND B;  4AY9 B;  1HD4 A;  1AOC A;  1SG1 A;  2H64 A;  2H62 A;  2QR0 C;  1HRP B;  3V6B A;  4XPJ A;  2GH0 C;  1MKG A;  1NYU B;  2ASK A;  2P6A A;  1KTZ A;  2V5E B;  1WQ9 A;  2VWE A;  1TZH V;  3BMP A;  3JVF A;  4BV4 L;  4GLS E;  4N1D A;  3S1K V;  4MID A;  4GLN E;  4UI2 B;  2GYZ A;  1WWW V;  5F3H I;  4KZN A;  2VPF A;  4QHU C;  5HHD A;  1KLC A;  5BQ8 B;  1XWD A;  4X1J A;  3QB4 A;  1QFW B;  1DZ7 A;  5BQ8 D;  1KLA A;  4MQW A;  1BTG A;  2KD3 A;  1TZI V;  3SEK B;  3BDY V;  5HI4 A;  1VPP V;  1NYS B;  2C7W A;  3E07 A;  1B98 A;  2FJH V;  2R52 A;  4KXZ A;  4EC7 A;  2X1X E;  4YCI C;  4YCG C;  1BND A;  2FJG V;  3B4V A;  4AY9 A;  2QJA A;  3MJK A;  5F3B C;  1FL7 B;  5HK5 E;  1HCN B;  1HRP A;  1B8M B;  5HI5 A;  1VPF A;  1BMP A;  4LXR J;  1REU A;  3QTK A;  2BHK A;  4QCI C;  1LX5 A;  2X1W A;  1FLT V;  3KFD A;  4LXS J;  5BQE B;  1FZV A;  3EO1 C;  4EDX V;  2ARP A;  4UHY A;  4UI1 A;  1RV6 V;  1JPY A;  4QAF C;  1MKK A;  3IJ2 A;  2VXS A;  4UHZ A;  5BQ8 A;  4EFV A;  4ZBN A;  2QJ9 A;  2ARV A;  1QFW A;  1SGF B;  5AEJ A;  5HHC A;  5JZ7 A;  2GOO A;  2XAC A;  1TFG A;  3MJG A;  1LXI A;  1M4U L;  3BK3 A;  3EVS B;  1WQ8 A;  1ZKZ A;  2PJY A;  2TGI A;  5BPU A;  2GNN A;  1QTY R;  1S4Y B;  4HSA A;  3P9W A;  4HQU A;  3FUB B;  5E4G A;  1CZ8 V;  3S1B V;  1FL7 A;  2GYR A;  5HHV A;  2QJB A;  3BUK A;  1TGK A;  4WPB A;  2IFG E;  1HCN A;  1B8M A;  1AGQ A;  2QCW A;  4HQX A;  1M4U A;  5BQC A;  1ES7 A;  1REW A;  4KV5 A;  1PDG A;  2QCQ A;  1WQ9 B;  4FAO A;  1E9J A; 
#chains in the Genus database with same CATH topology
 1HCF A;  4EAX A;  1MJV A;  4UI0 A;  5BQE A;  2XV7 A;  2R53 A;  1B8K A;  3V2A A;  5BQB A;  1BET A;  5HK5 A;  5FV2 V;  4MPL A;  1XWD B;  1WAQ A;  5HHX A;  4ZFF C;  1KAT W;  4MQW B;  4HR9 A;  5FV1 V;  5HI3 A;  2B0U A;  1BJ1 V;  3HH2 A;  1NT3 A;  4EDW V;  3RJR A;  1TGJ A;  1BND B;  4AY9 B;  1HD4 A;  1AOC A;  1SG1 A;  2H64 A;  2H62 A;  2QR0 C;  1HRP B;  3V6B A;  4XPJ A;  2GH0 C;  1MKG A;  1NYU B;  2ASK A;  2P6A A;  1KTZ A;  2V5E B;  1WQ9 A;  2VWE A;  1TZH V;  3BMP A;  3JVF A;  4BV4 L;  4GLS E;  4N1D A;  3S1K V;  4MID A;  4GLN E;  4UI2 B;  2GYZ A;  1WWW V;  5F3H I;  4KZN A;  2VPF A;  4QHU C;  5HHD A;  1KLC A;  5BQ8 B;  1XWD A;  4X1J A;  3QB4 A;  1QFW B;  1DZ7 A;  5BQ8 D;  1KLA A;  4MQW A;  1BTG A;  2KD3 A;  1TZI V;  3SEK B;  3BDY V;  5HI4 A;  1VPP V;  1NYS B;  2C7W A;  3E07 A;  1B98 A;  2FJH V;  2R52 A;  4KXZ A;  4EC7 A;  2X1X E;  4YCI C;  4YCG C;  1BND A;  2FJG V;  3B4V A;  4AY9 A;  2QJA A;  3MJK A;  5F3B C;  1FL7 B;  5HK5 E;  1HCN B;  1HRP A;  1B8M B;  5HI5 A;  1VPF A;  1BMP A;  4LXR J;  1REU A;  3QTK A;  2BHK A;  4QCI C;  1LX5 A;  2X1W A;  1FLT V;  3KFD A;  4LXS J;  5BQE B;  1FZV A;  3EO1 C;  4EDX V;  2ARP A;  4UHY A;  4UI1 A;  1RV6 V;  1JPY A;  4QAF C;  1MKK A;  3IJ2 A;  2VXS A;  4UHZ A;  5BQ8 A;  4EFV A;  4ZBN A;  2QJ9 A;  2ARV A;  1QFW A;  1SGF B;  5AEJ A;  5HHC A;  5JZ7 A;  2GOO A;  2XAC A;  1TFG A;  3MJG A;  1LXI A;  1M4U L;  3BK3 A;  3EVS B;  1WQ8 A;  1ZKZ A;  2PJY A;  2TGI A;  5BPU A;  2GNN A;  1QTY R;  1S4Y B;  4HSA A;  3P9W A;  4HQU A;  3FUB B;  5E4G A;  1CZ8 V;  3S1B V;  1FL7 A;  2GYR A;  5HHV A;  2QJB A;  3BUK A;  1TGK A;  4WPB A;  2IFG E;  1HCN A;  1B8M A;  1AGQ A;  2QCW A;  4HQX A;  1M4U A;  5BQC A;  1ES7 A;  1REW A;  4KV5 A;  1PDG A;  2QCQ A;  1WQ9 B;  4FAO A;  1E9J A; 
#chains in the Genus database with same CATH homology
 1HCF A;  4EAX A;  1MJV A;  4UI0 A;  5BQE A;  2XV7 A;  2R53 A;  1B8K A;  3V2A A;  5BQB A;  1BET A;  5HK5 A;  5FV2 V;  4MPL A;  1XWD B;  1WAQ A;  5HHX A;  4ZFF C;  1KAT W;  4MQW B;  4HR9 A;  5FV1 V;  5HI3 A;  2B0U A;  1BJ1 V;  3HH2 A;  1NT3 A;  4EDW V;  3RJR A;  1TGJ A;  1BND B;  4AY9 B;  1HD4 A;  1AOC A;  1SG1 A;  2H64 A;  2H62 A;  2QR0 C;  1HRP B;  3V6B A;  4XPJ A;  2GH0 C;  1MKG A;  1NYU B;  2ASK A;  2P6A A;  1KTZ A;  2V5E B;  1WQ9 A;  2VWE A;  1TZH V;  3BMP A;  3JVF A;  4BV4 L;  4GLS E;  4N1D A;  3S1K V;  4MID A;  4GLN E;  4UI2 B;  2GYZ A;  1WWW V;  5F3H I;  4KZN A;  2VPF A;  4QHU C;  5HHD A;  1KLC A;  5BQ8 B;  1XWD A;  4X1J A;  3QB4 A;  1QFW B;  1DZ7 A;  5BQ8 D;  1KLA A;  4MQW A;  1BTG A;  2KD3 A;  1TZI V;  3SEK B;  3BDY V;  5HI4 A;  1VPP V;  1NYS B;  2C7W A;  3E07 A;  1B98 A;  2FJH V;  2R52 A;  4KXZ A;  4EC7 A;  2X1X E;  4YCI C;  4YCG C;  1BND A;  2FJG V;  3B4V A;  4AY9 A;  2QJA A;  3MJK A;  5F3B C;  1FL7 B;  5HK5 E;  1HCN B;  1HRP A;  1B8M B;  5HI5 A;  1VPF A;  1BMP A;  4LXR J;  1REU A;  3QTK A;  2BHK A;  4QCI C;  1LX5 A;  2X1W A;  1FLT V;  3KFD A;  4LXS J;  5BQE B;  1FZV A;  3EO1 C;  4EDX V;  2ARP A;  4UHY A;  4UI1 A;  1RV6 V;  1JPY A;  4QAF C;  1MKK A;  3IJ2 A;  2VXS A;  4UHZ A;  5BQ8 A;  4EFV A;  4ZBN A;  2QJ9 A;  2ARV A;  1QFW A;  1SGF B;  5AEJ A;  5HHC A;  5JZ7 A;  2GOO A;  2XAC A;  1TFG A;  3MJG A;  1LXI A;  1M4U L;  3BK3 A;  3EVS B;  1WQ8 A;  1ZKZ A;  2PJY A;  2TGI A;  5BPU A;  2GNN A;  1QTY R;  1S4Y B;  4HSA A;  3P9W A;  4HQU A;  3FUB B;  5E4G A;  1CZ8 V;  3S1B V;  1FL7 A;  2GYR A;  5HHV A;  2QJB A;  3BUK A;  1TGK A;  4WPB A;  2IFG E;  1HCN A;  1B8M A;  1AGQ A;  2QCW A;  4HQX A;  1M4U A;  5BQC A;  1ES7 A;  1REW A;  4KV5 A;  1PDG A;  2QCQ A;  1WQ9 B;  4FAO A;  1E9J A; 
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