The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
14
|
sequence length |
99
|
structure length |
92
|
Chain Sequence |
DSNTKGWSEVLKGSECKPRPIVVPVSETHPELTSQRFNPPCVTLMRCGGCCNDESLECVPTEEVNVTMELLGGMQRLSFVEHKKCDCRPRFT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the Orf virus NZ2 variant of vascular endothelial growth factor-E. Implications for receptor specificity.
pubmed doi rcsb |
| molecule tags |
Hormone/growth factor
|
| source organism |
Orf virus (strain nz2)
|
| molecule keywords |
Vascular endothelial growth factor homolog
|
| total genus |
14
|
| structure length |
92
|
| sequence length |
99
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2006-04-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00341 | PDGF | PDGF/VEGF domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines |
#chains in the Genus database with same CATH superfamily 4QCI C; 4MQW A; 3HH2 A; 1QTY R; 1QFW B; 4HQU A; 1HRP A; 4KXZ A; 4UI2 B; 3SEK B; 4YCG C; 5AEJ A; 5FV1 V; 1M4U A; 2KD3 A; 5BQ8 A; 1BND B; 2GNN A; 1AOC A; 2FJG V; 1TGJ A; 1CZ8 V; 5BQB A; 2QJB A; 3RJR A; 1TGK A; 4EC7 A; 5BQE A; 1HCN B; 1NYU B; 1VPP V; 3BDY V; 1TFG A; 2ARV A; 2GOO A; 2P6A A; 3B4V A; 1LX5 A; 4XPJ A; 2TGI A; 4EFV A; 1XWD B; 1BTG A; 1RV6 V; 4UI1 A; 3BK3 A; 2QJA A; 1AGQ A; 2QCW A; 1WQ9 B; 5BQC A; 5HI4 A; 1QFW A; 1FZV A; 2PJY A; 4BV4 L; 2GYZ A; 4UHZ A; 1M4U L; 2VXS A; 3FUB B; 4ZBN A; 1BND A; 1VPF A; 5HHX A; 1B8M B; 3EVS B; 3QB4 A; 1HCN A; 3S1K V; 5F3B C; 1LXI A; 2QJ9 A; 2VWE A; 1NYS B; 4LXS J; 1BET A; 3V2A A; 1REU A; 3EO1 C; 4YCI C; 1XWD A; 4UHY A; 1HD4 A; 1MKK A; 1WQ8 A; 1TZH V; 2H62 A; 1ZKZ A; 4ZFF C; 1TZI V; 2H64 A; 1S4Y B; 4KV5 A; 3S1B V; 1HCF A; 1WQ9 A; 1MJV A; 5HHD A; 2C7W A; 1NT3 A; 2B0U A; 2GYR A; 4MPL A; 4QAF C; 4UI0 A; 1REW A; 5F3H I; 3P9W A; 1KLA A; 2XV7 A; 1BJ1 V; 1B8K A; 5FV2 V; 4GLS E; 3BMP A; 5BPU A; 1DZ7 A; 5HHC A; 2R53 A; 1FL7 B; 2VPF A; 4QHU C; 1PDG A; 1B8M A; 5HI3 A; 1ES7 A; 4AY9 B; 1SG1 A; 2XAC A; 2GH0 C; 3QTK A; 1KTZ A; 5HK5 E; 4EDW V; 1SGF B; 3BUK A; 2R52 A; 2QCQ A; 2IFG E; 2X1W A; 3MJK A; 3KFD A; 1KLC A; 5BQ8 D; 4HQX A; 5HK5 A; 4EDX V; 1KAT W; 1WAQ A; 1JPY A; 3V6B A; 4MQW B; 5HI5 A; 1B98 A; 1HRP B; 4MID A; 4WPB A; 4X1J A; 3IJ2 A; 2FJH V; 4HSA A; 5HHV A; 1FL7 A; 4GLN E; 1BMP A; 5BQ8 B; 3MJG A; 4HR9 A; 1E9J A; 1FLT V; 2ARP A; 3E07 A; 4AY9 A; 2ASK A; 1WWW V; 5BQE B; 4FAO A; 2V5E B; 3JVF A; 2BHK A; 4LXR J; 4KZN A; 5JZ7 A; 1MKG A; 2X1X E; 4EAX A; 4N1D A; 2QR0 C; 5E4G A; #chains in the Genus database with same CATH topology 4QCI C; 4MQW A; 3HH2 A; 1QTY R; 1QFW B; 4HQU A; 1HRP A; 4KXZ A; 4UI2 B; 3SEK B; 4YCG C; 5AEJ A; 5FV1 V; 1M4U A; 2KD3 A; 5BQ8 A; 1BND B; 2GNN A; 1AOC A; 2FJG V; 1TGJ A; 1CZ8 V; 5BQB A; 2QJB A; 3RJR A; 1TGK A; 4EC7 A; 5BQE A; 1HCN B; 1NYU B; 1VPP V; 3BDY V; 1TFG A; 2ARV A; 2GOO A; 2P6A A; 3B4V A; 1LX5 A; 4XPJ A; 2TGI A; 4EFV A; 1XWD B; 1BTG A; 1RV6 V; 4UI1 A; 3BK3 A; 2QJA A; 1AGQ A; 2QCW A; 1WQ9 B; 5BQC A; 5HI4 A; 1QFW A; 1FZV A; 2PJY A; 4BV4 L; 2GYZ A; 4UHZ A; 1M4U L; 2VXS A; 3FUB B; 4ZBN A; 1BND A; 1VPF A; 5HHX A; 1B8M B; 3EVS B; 3QB4 A; 1HCN A; 3S1K V; 5F3B C; 1LXI A; 2QJ9 A; 2VWE A; 1NYS B; 4LXS J; 1BET A; 3V2A A; 1REU A; 3EO1 C; 4YCI C; 1XWD A; 4UHY A; 1HD4 A; 1MKK A; 1WQ8 A; 1TZH V; 2H62 A; 1ZKZ A; 4ZFF C; 1TZI V; 2H64 A; 1S4Y B; 4KV5 A; 3S1B V; 1HCF A; 1WQ9 A; 1MJV A; 5HHD A; 2C7W A; 1NT3 A; 2B0U A; 2GYR A; 4MPL A; 4QAF C; 4UI0 A; 1REW A; 5F3H I; 3P9W A; 1KLA A; 2XV7 A; 1BJ1 V; 1B8K A; 5FV2 V; 4GLS E; 3BMP A; 5BPU A; 1DZ7 A; 5HHC A; 2R53 A; 1FL7 B; 2VPF A; 4QHU C; 1PDG A; 1B8M A; 5HI3 A; 1ES7 A; 4AY9 B; 1SG1 A; 2XAC A; 2GH0 C; 3QTK A; 1KTZ A; 5HK5 E; 4EDW V; 1SGF B; 3BUK A; 2R52 A; 2QCQ A; 2IFG E; 2X1W A; 3MJK A; 3KFD A; 1KLC A; 5BQ8 D; 4HQX A; 5HK5 A; 4EDX V; 1KAT W; 1WAQ A; 1JPY A; 3V6B A; 4MQW B; 5HI5 A; 1B98 A; 1HRP B; 4MID A; 4WPB A; 4X1J A; 3IJ2 A; 2FJH V; 4HSA A; 5HHV A; 1FL7 A; 4GLN E; 1BMP A; 5BQ8 B; 3MJG A; 4HR9 A; 1E9J A; 1FLT V; 2ARP A; 3E07 A; 4AY9 A; 2ASK A; 1WWW V; 5BQE B; 4FAO A; 2V5E B; 3JVF A; 2BHK A; 4LXR J; 4KZN A; 5JZ7 A; 1MKG A; 2X1X E; 4EAX A; 4N1D A; 2QR0 C; 5E4G A; #chains in the Genus database with same CATH homology 4QCI C; 4MQW A; 3HH2 A; 1QTY R; 1QFW B; 4HQU A; 1HRP A; 4KXZ A; 4UI2 B; 3SEK B; 4YCG C; 5AEJ A; 5FV1 V; 1M4U A; 2KD3 A; 5BQ8 A; 1BND B; 2GNN A; 1AOC A; 2FJG V; 1TGJ A; 1CZ8 V; 5BQB A; 2QJB A; 3RJR A; 1TGK A; 4EC7 A; 5BQE A; 1HCN B; 1NYU B; 1VPP V; 3BDY V; 1TFG A; 2ARV A; 2GOO A; 2P6A A; 3B4V A; 1LX5 A; 4XPJ A; 2TGI A; 4EFV A; 1XWD B; 1BTG A; 1RV6 V; 4UI1 A; 3BK3 A; 2QJA A; 1AGQ A; 2QCW A; 1WQ9 B; 5BQC A; 5HI4 A; 1QFW A; 1FZV A; 2PJY A; 4BV4 L; 2GYZ A; 4UHZ A; 1M4U L; 2VXS A; 3FUB B; 4ZBN A; 1BND A; 1VPF A; 5HHX A; 1B8M B; 3EVS B; 3QB4 A; 1HCN A; 3S1K V; 5F3B C; 1LXI A; 2QJ9 A; 2VWE A; 1NYS B; 4LXS J; 1BET A; 3V2A A; 1REU A; 3EO1 C; 4YCI C; 1XWD A; 4UHY A; 1HD4 A; 1MKK A; 1WQ8 A; 1TZH V; 2H62 A; 1ZKZ A; 4ZFF C; 1TZI V; 2H64 A; 1S4Y B; 4KV5 A; 3S1B V; 1HCF A; 1WQ9 A; 1MJV A; 5HHD A; 2C7W A; 1NT3 A; 2B0U A; 2GYR A; 4MPL A; 4QAF C; 4UI0 A; 1REW A; 5F3H I; 3P9W A; 1KLA A; 2XV7 A; 1BJ1 V; 1B8K A; 5FV2 V; 4GLS E; 3BMP A; 5BPU A; 1DZ7 A; 5HHC A; 2R53 A; 1FL7 B; 2VPF A; 4QHU C; 1PDG A; 1B8M A; 5HI3 A; 1ES7 A; 4AY9 B; 1SG1 A; 2XAC A; 2GH0 C; 3QTK A; 1KTZ A; 5HK5 E; 4EDW V; 1SGF B; 3BUK A; 2R52 A; 2QCQ A; 2IFG E; 2X1W A; 3MJK A; 3KFD A; 1KLC A; 5BQ8 D; 4HQX A; 5HK5 A; 4EDX V; 1KAT W; 1WAQ A; 1JPY A; 3V6B A; 4MQW B; 5HI5 A; 1B98 A; 1HRP B; 4MID A; 4WPB A; 4X1J A; 3IJ2 A; 2FJH V; 4HSA A; 5HHV A; 1FL7 A; 4GLN E; 1BMP A; 5BQ8 B; 3MJG A; 4HR9 A; 1E9J A; 1FLT V; 2ARP A; 3E07 A; 4AY9 A; 2ASK A; 1WWW V; 5BQE B; 4FAO A; 2V5E B; 3JVF A; 2BHK A; 4LXR J; 4KZN A; 5JZ7 A; 1MKG A; 2X1X E; 4EAX A; 4N1D A; 2QR0 C; 5E4G A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
